RLG00000015268

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000792
Physical Location & Seq
Reverse (-)
63802716 .. 63804266
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015268

Sequence Viewer

Length: 1017 bp
ATGGAGATTTCGTCGATAAGAGGACTAACTGAACTGGGAATGGAGGATCCCTTCTTCGTCAACCAGTGGCACATGAACTCTCTCGATGAGCTCAGCATGCTACCATTATCAGCTGCCTTTGGAGAGAATTTGCAACAGGCTCACTGCCACCCGATTTTAAACCCTAAATCTTCTACCAATACTTCTCTGAGTTCCATTGATAGACCCATGAAACAGTTCAAACCCAACAACTGGAGTCCATCGAACCACCAGTTTGCTTCCTTGCCAAACCTTCTCACCTTTGTCAATTCATACAACACAAACCAAGTGGGGGTTGTTAAGCCTAAGGAGGAGACGGCAGTATGTTCAAAGAACATGAACCATTTCCCTTCTGATATATTGGTTTCTCAAGGTTCATTATTTGGCAACCAAAACTCTTCATTGAAGGCCAGTCAGGGAACAAACAGGATCAGCACAAACACTAGGCTTTCGCAAACTCAAGATCACATAATTGCAGAAAGGAAGCGGCGAGAGAAGCTTAGTCAACGGTTCATTGCTTTATCTGCAATGGTTCCTGGCCTAAAAAAGACGGACAAGGCTTCTGTTCTAGGAGATTCTATCAAGTACATCAAGCAACTACAGGAGAAGGTAAAGACACTTGAGGAGCAGACGAGAGTGAAAAAGATGGAATCAGTCGTCTCTGTGAAAAGATCACAGCTCATTGCAAATGATGATAACTCTTCTTCGGACGATAACAACTCCAGTGTTTCATTTGAGGAGACACTGCCAGAAATTGAAGCAAGATTCTGTGACAACAATGTCCTGATAAGAGTTCACTGTGAGAAAAGAAAAGGAGTTGTTGAAAAAACAATTGCTGAGGTTGAGAAGCTGCAACTAAAATTGATCAATAGCAGTGTCATGACATTTGGTAGTTCTGTTCTTGATGTAACCATTGTTGCTCAGATGGAAGTGGAATTCTGTCTCTCAGTGAAGGATGTCGTCAAGAATCTACGCTCCGCTTTCGACTTGTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

339

Amino Acids

37.89

Weight (kDa)

8.19

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 161 - 207 6.3e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
AccB7I CCANNNNNTGG 1 cut(s) 231
AciI CCGC 2 cut(s) 505, 996
AclWI GGATC 3 cut(s) 41, 54, 455
AcsI RAATTY 2 cut(s) 127, 953
AfaI GTAC 1 cut(s) 605
AfiI CCNNNNNNNGG 2 cut(s) 231, 310
AgsI TTSAA 5 cut(s) 220, 348, 424, 776, 842
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 5 cut(s) 91, 113, 517, 697, 868
AluI AGCT 5 cut(s) 91, 113, 517, 697, 868
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 4 cut(s) 326, 682, 752, 965
AlwI GGATC 3 cut(s) 41, 54, 455
AoxI GGCC 2 cut(s) 426, 556
ApeKI GCWGC 2 cut(s) 113, 868
ApoI RAATTY 2 cut(s) 127, 953
Asp700I GAANNNNTTC 2 cut(s) 215, 362
AsuHPI GGTGA 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 324
BamHI GGATCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 2 cut(s) 100, 855
BccI CCATC 3 cut(s) 247, 658, 937
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 882
BcoDI GTCTC 4 cut(s) 326, 682, 752, 965
BfaI CTAG 2 cut(s) 462, 587
BfmI CTRYAG 1 cut(s) 617
BisI GCNGC 3 cut(s) 114, 506, 869
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 3 cut(s) 115, 507, 870
Bme1390I CCNGG 1 cut(s) 555
BmiI GGNNCC 2 cut(s) 48, 552
BmrFI CCNGG 1 cut(s) 555
BmrI ACTGGG 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 44
BpmI CTGGAG 2 cut(s) 253, 724
Bpu10I CCTNAGC 1 cut(s) 855
Bpu1102I GCTNAGC 1 cut(s) 92
BpuEI CTTGAG 3 cut(s) 372, 462, 659
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 310
Bse1I ACTGG 6 cut(s) 39, 64, 236, 250, 429, 741
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 3 cut(s) 531, 552, 699
BseBI CCWGG 1 cut(s) 555
BseGI GGATG 1 cut(s) 979
BseLI CCNNNNNNNGG 2 cut(s) 231, 310
BseMI GCAATG 3 cut(s) 531, 552, 699
BseMII CTCAG 5 cut(s) 106, 179, 846, 953, 978
BseNI ACTGG 6 cut(s) 39, 64, 236, 250, 429, 741
BseRI GAGGAG 3 cut(s) 344, 656, 770
BseXI GCAGC 2 cut(s) 100, 855
BshFI GGCC 2 cut(s) 428, 558
BsiHKAI GWGCWC 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 231, 310
BsmAI GTCTC 4 cut(s) 326, 682, 752, 965
BsmBI CGTCTC 2 cut(s) 326, 682
BsnI GGCC 2 cut(s) 428, 558
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 5 cut(s) 46, 447, 481, 689, 882
Bsp1720I GCTNAGC 1 cut(s) 92
BspACI CCGC 2 cut(s) 505, 996
BspANI GGCC 2 cut(s) 428, 558
BspCNI CTCAG 5 cut(s) 105, 180, 847, 952, 977
BspHI TCATGA 1 cut(s) 897
BspLI GGNNCC 2 cut(s) 48, 552
BspPI GGATC 3 cut(s) 41, 54, 455
BsrDI GCAATG 3 cut(s) 531, 552, 699
BsrI ACTGG 6 cut(s) 39, 64, 236, 250, 429, 741
BssMI GATC 5 cut(s) 46, 447, 481, 689, 882
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 3 cut(s) 216, 528, 818
Bst6I CTCTTC 2 cut(s) 421, 724
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 7 cut(s) 92, 188, 324, 518, 855, 939, 964
BstF5I GGATG 1 cut(s) 979
BstKTI GATC 5 cut(s) 49, 450, 484, 692, 885
BstMAI GTCTC 4 cut(s) 326, 682, 752, 965
BstMBI GATC 5 cut(s) 46, 447, 481, 689, 882
BstMWI GCNNNNNNNGC 3 cut(s) 97, 514, 542
BstNI CCWGG 1 cut(s) 555
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 617
BstV1I GCAGC 2 cut(s) 100, 855
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 428, 558
BtsCI GGATG 1 cut(s) 979
BtsI GCAGTG 3 cut(s) 142, 761, 898
BtsIMutI CAGTG 7 cut(s) 71, 142, 748, 761, 814, 898, 972
Cac8I GCNNGC 1 cut(s) 98
CciI TCATGA 1 cut(s) 897
Csp6I GTAC 1 cut(s) 604
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 6 cut(s) 73, 97, 208, 355, 898, 1012
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 7 cut(s) 92, 188, 324, 518, 855, 939, 964
DpnI GATC 5 cut(s) 48, 449, 483, 691, 884
DpnII GATC 5 cut(s) 46, 447, 481, 689, 882
DraI TTTAAA 1 cut(s) 159
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
Eam1104I CTCTTC 2 cut(s) 421, 724
EarI CTCTTC 2 cut(s) 421, 724
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 953
EcoRII CCWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 2 cut(s) 326, 682
FaeI CATG 6 cut(s) 76, 100, 211, 358, 901, 1015
FatI CATG 6 cut(s) 72, 96, 207, 354, 897, 1011
FbaI TGATCA 1 cut(s) 882
Fnu4HI GCNGC 3 cut(s) 114, 506, 869
FokI GGATG 1 cut(s) 986
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 114, 506, 869
FspBI CTAG 2 cut(s) 462, 587
GluI GCNGC 3 cut(s) 114, 506, 869
GsuI CTGGAG 2 cut(s) 253, 724
HaeIII GGCC 2 cut(s) 428, 558
Hin1II CATG 6 cut(s) 76, 100, 211, 358, 901, 1015
HincII GTYRAC 2 cut(s) 61, 524
HindII GTYRAC 2 cut(s) 61, 524
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 5 cut(s) 235, 593, 668, 783, 985
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 3 cut(s) 61, 524, 814
Hpy188I TCNGA 4 cut(s) 189, 373, 727, 942
Hpy188III TCNNGA 6 cut(s) 83, 479, 802, 898, 920, 982
Hpy8I GTNNAC 3 cut(s) 61, 524, 814
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 6 cut(s) 61, 281, 378, 418, 619, 964
HpyCH4III ACNGT 3 cut(s) 216, 528, 818
HpyCH4V TGCA 5 cut(s) 133, 494, 545, 704, 871
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 514, 542
HpyF3I CTNAG 7 cut(s) 92, 188, 324, 518, 855, 939, 964
Hsp92II CATG 6 cut(s) 76, 100, 211, 358, 901, 1015
Ksp22I TGATCA 1 cut(s) 882
Kzo9I GATC 5 cut(s) 46, 447, 481, 689, 882
LmnI GCTCC 2 cut(s) 643, 998
Lsp1109I GCAGC 2 cut(s) 100, 855
MaeI CTAG 2 cut(s) 462, 587
MaeIII GTNAC 2 cut(s) 788, 925
MalI GATC 5 cut(s) 48, 449, 483, 691, 884
MboI GATC 5 cut(s) 46, 447, 481, 689, 882
MboII GAAGA 5 cut(s) 46, 162, 408, 711, 714
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 7 cut(s) 127, 286, 489, 771, 849, 878, 953
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 6 cut(s) 14, 37, 322, 634, 748, 850
MroXI GAANNNNTTC 2 cut(s) 215, 362
MseI TTAA 2 cut(s) 158, 318
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 555
MunI CAATTG 1 cut(s) 849
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 3 cut(s) 97, 514, 542
NdeII GATC 5 cut(s) 46, 447, 481, 689, 882
NlaIII CATG 6 cut(s) 76, 100, 211, 358, 901, 1015
NlaIV GGNNCC 2 cut(s) 48, 552
NmuCI GTSAC 1 cut(s) 788
NspI RCATGY 1 cut(s) 100
PaeI GCATGC 1 cut(s) 100
PagI TCATGA 1 cut(s) 897
PdmI GAANNNNTTC 2 cut(s) 215, 362
PfeI GAWTC 4 cut(s) 593, 668, 783, 985
PflMI CCANNNNNTGG 1 cut(s) 231
PkrI GCNGC 3 cut(s) 115, 507, 870
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 2 cut(s) 48, 552
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 158, 318
SatI GCNGC 3 cut(s) 114, 506, 869
Sau3AI GATC 5 cut(s) 46, 447, 481, 689, 882
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 617
SmlI CTYRAG 3 cut(s) 387, 477, 638
SmoI CTYRAG 3 cut(s) 387, 477, 638
SphI GCATGC 1 cut(s) 100
Sse9I AATT 7 cut(s) 127, 286, 489, 771, 849, 878, 953
SsiI CCGC 2 cut(s) 505, 996
SspMI CTAG 2 cut(s) 462, 587
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 216, 528, 818
TaqI TCGA 4 cut(s) 14, 84, 242, 1002
TasI AATT 7 cut(s) 127, 286, 489, 771, 849, 878, 953
TatI WGTACW 1 cut(s) 603
TauI GCSGC 1 cut(s) 508
TfiI GAWTC 4 cut(s) 593, 668, 783, 985
Tru1I TTAA 2 cut(s) 158, 318
Tru9I TTAA 2 cut(s) 158, 318
TscAI CASTG 7 cut(s) 71, 149, 748, 768, 821, 898, 972
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 2 cut(s) 113, 868
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 9 cut(s) 89, 224, 279, 371, 384, 408, 520, 738, 1000
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 7 cut(s) 71, 149, 748, 768, 821, 898, 972
Van91I CCANNNNNTGG 1 cut(s) 231
XapI RAATTY 2 cut(s) 127, 953
XceI RCATGY 1 cut(s) 100
XmnI GAANNNNTTC 2 cut(s) 215, 362
XspI CTAG 2 cut(s) 462, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.