Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000332.1

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

245692 .. 247318

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000332.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgatctcatcagcaaaatgggtatctgaattggaaatggaagatcccactttcctgaatcaatatgaaatgaattctcatctggactactcacttgaagatctaaatttccagtctttttctgctgagagctactcatcttacccagattttacccctcatcaaaatgatgttgatcaaaggccagcaaaacagcccaagaataaccacagtaactggaactcttgcactaccactcatgaccacataattacagtcccaagggcttcctcttcagcctcctcacacctaatttcttttgacaactccaactcatcagcatatggttctcttgattgcactactactgtgaagccaaagaatgaggtcctgggttctggtggaaaattgaattcaatttcaaatatgatttcacaaggtaattcctatgacccccaaacttgttcaccaaaccgggcatatggccaagggatcaagagggctgctactgtcactagaagtcccttacatgctcaagatcacgttctagctgagcgaaagcgccgagaaaagctcagccagcggttcatcgctctatcagccctagtaccaggtctaaagaagatggacaaggcttcagtgcttggagatgccataaaatatgtgaaacagctgcaagaacgtatgaagatgctagaggaacaagcggcaaagaaaaccgtggagtcagtggtgtttgtgaagagaactcagtactctgtggatgatgatatctcctcatccgatgagaacttcgacagctgctccgatcaaccacttcctgaaatcgaagctagggtttcagacaaagaggttctcatacgaatccactgtgagaaaaagaaagggtgtctggcaaacatactaagcgaaatagagaagcttgatctcaccattcttaatagcagcgtcttgccctttggcaattcaactctagatatcactgtcgtttctcagatggacgttgagtacagcatgacagtgaaggagcttgtaagaaagctaagacaagctttgctcaagttggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

349

Amino Acids

39.05

Weight (kDa)

6.17

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	562, 686
AclWI	GGATC	2 cut(s)	38, 479
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	73, 106, 391
AcuI	CTGAAG	2 cut(s)	258, 600
AfaI	GTAC	3 cut(s)	588, 734, 989
AgsI	TTSAA	5 cut(s)	98, 391, 396, 402, 948
AjnI	CCWGG	2 cut(s)	369, 589
AlwI	GGATC	2 cut(s)	38, 479
AlwNI	CAGNNNCTG	1 cut(s)	216
AoxI	GGCC	2 cut(s)	182, 463
ApeKI	GCWGC	4 cut(s)	482, 652, 780, 924
ApoI	RAATTY	3 cut(s)	73, 106, 391
AspLEI	GCGC	1 cut(s)	543
AspS9I	GGNCC	1 cut(s)	367
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	438, 901
AvaII	GGWCC	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	465
BbvI	GCAGC	4 cut(s)	469, 639, 767, 936
BccI	CCATC	2 cut(s)	598, 970
BciT130I	CCWGG	2 cut(s)	371, 591
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	455
BfaI	CTAG	6 cut(s)	495, 527, 584, 674, 813, 953
BfoI	RGCGCY	1 cut(s)	544
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	5 cut(s)	483, 653, 687, 781, 925
BlpI	GCTNAGC	2 cut(s)	531, 554
BlsI	GCNGC	5 cut(s)	484, 654, 688, 782, 926
BmcAI	AGTACT	1 cut(s)	734
Bme1390I	CCNGG	3 cut(s)	371, 455, 591
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmrFI	CCNGG	3 cut(s)	371, 455, 591
BmsI	GCATC	2 cut(s)	619, 660
BplI	GAGNNNNNCTC	4 cut(s)	119, 151, 537, 569
Bpu1102I	GCTNAGC	2 cut(s)	531, 554
BpuEI	CTTGAG	2 cut(s)	498, 1022
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	260, 370, 466, 699
BsaXI	ACNNNNNCTCC	2 cut(s)	767, 797
Bse1I	ACTGG	2 cut(s)	112, 221
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	371, 591
BseDI	CCNNGG	4 cut(s)	260, 370, 466, 699
BseGI	GGATG	2 cut(s)	748, 758
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	5 cut(s)	117, 522, 568, 743, 986
BseNI	ACTGG	2 cut(s)	112, 221
BseRI	GAGGAG	2 cut(s)	271, 745
BseXI	GCAGC	4 cut(s)	469, 639, 767, 936
BshFI	GGCC	2 cut(s)	184, 465
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	2 cut(s)	242, 486
BsmFI	GGGAC	2 cut(s)	242, 486
BsnI	GGCC	2 cut(s)	184, 465
Bsp143I	GATC	8 cut(s)	3, 43, 100, 175, 471, 517, 787, 904
Bsp1720I	GCTNAGC	2 cut(s)	531, 554
BspACI	CCGC	2 cut(s)	562, 686
BspANI	GGCC	2 cut(s)	184, 465
BspCNI	CTCAG	5 cut(s)	118, 523, 567, 742, 985
BspHI	TCATGA	1 cut(s)	238
BspPI	GGATC	2 cut(s)	38, 479
BsrI	ACTGG	2 cut(s)	112, 221
BssECI	CCNNGG	4 cut(s)	260, 370, 466, 699
BssMI	GATC	8 cut(s)	3, 43, 100, 175, 471, 517, 787, 904
BssT1I	CCWWGG	2 cut(s)	260, 466
Bst2UI	CCWGG	2 cut(s)	371, 591
Bst4CI	ACNGT	8 cut(s)	212, 256, 349, 490, 700, 851, 964, 1000
Bst6I	CTCTTC	2 cut(s)	277, 716
BstC8I	GCNNGC	2 cut(s)	186, 560
BstDEI	CTNAG	7 cut(s)	126, 531, 554, 729, 884, 972, 1022
BstDSI	CCRYGG	1 cut(s)	699
BstF5I	GGATG	2 cut(s)	748, 758
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	543
BstKTI	GATC	8 cut(s)	6, 46, 103, 178, 474, 520, 790, 907
BstMBI	GATC	8 cut(s)	3, 43, 100, 175, 471, 517, 787, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	559, 578
BstNI	CCWGG	2 cut(s)	371, 591
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	3 cut(s)	369, 453, 589
BstV1I	GCAGC	4 cut(s)	469, 639, 767, 936
BstX2I	RGATCY	2 cut(s)	43, 100
BstYI	RGATCY	2 cut(s)	43, 100
BsuRI	GGCC	2 cut(s)	184, 465
BtgI	CCRYGG	1 cut(s)	699
BtgZI	GCGATG	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	748, 758
BtsIMutI	CAGTG	5 cut(s)	624, 714, 847, 960, 1005
Cac8I	GCNNGC	2 cut(s)	186, 560
CaiI	CAGNNNCTG	1 cut(s)	216
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	367
CseI	GACGC	1 cut(s)	916
CsiI	ACCWGGT	1 cut(s)	589
Csp6I	GTAC	3 cut(s)	587, 733, 988
CviAII	CATG	3 cut(s)	239, 509, 994
CviQI	GTAC	3 cut(s)	587, 733, 988
DdeI	CTNAG	7 cut(s)	126, 531, 554, 729, 884, 972, 1022
DpnI	GATC	8 cut(s)	5, 45, 102, 177, 473, 519, 789, 906
DpnII	GATC	8 cut(s)	3, 43, 100, 175, 471, 517, 787, 904
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	2 cut(s)	277, 716
EarI	CTCTTC	2 cut(s)	277, 716
Eco130I	CCWWGG	2 cut(s)	260, 466
Eco32I	GATATC	2 cut(s)	751, 958
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	258, 600
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRI	GAATTC	2 cut(s)	73, 391
EcoRII	CCWGG	2 cut(s)	369, 589
EcoRV	GATATC	2 cut(s)	751, 958
EcoT14I	CCWWGG	2 cut(s)	260, 466
ErhI	CCWWGG	2 cut(s)	260, 466
FaeI	CATG	3 cut(s)	242, 512, 997
FalI	AAGNNNNNCTT	2 cut(s)	1015, 1047
FaqI	GGGAC	2 cut(s)	242, 486
FatI	CATG	3 cut(s)	238, 508, 993
FauNDI	CATATG	2 cut(s)	322, 460
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	483, 653, 687, 781, 925
FokI	GGATG	2 cut(s)	745, 755
Fsp4HI	GCNGC	5 cut(s)	483, 653, 687, 781, 925
FspBI	CTAG	6 cut(s)	495, 527, 584, 674, 813, 953
GlaI	GCGC	1 cut(s)	542
GluI	GCNGC	5 cut(s)	483, 653, 687, 781, 925
HaeII	RGCGCY	1 cut(s)	544
HaeIII	GGCC	2 cut(s)	184, 465
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	1 cut(s)	916
HhaI	GCGC	1 cut(s)	543
Hin1II	CATG	3 cut(s)	242, 512, 997
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HindIII	AAGCTT	2 cut(s)	899, 1029
HinfI	GANTC	3 cut(s)	58, 704, 843
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	2 cut(s)	438, 901
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	5 cut(s)	28, 763, 787, 823, 975
Hpy188III	TCNNGA	8 cut(s)	55, 83, 239, 332, 475, 515, 800, 953
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	997
HpyCH4III	ACNGT	8 cut(s)	212, 256, 349, 490, 700, 851, 964, 1000
HpyCH4IV	ACGT	3 cut(s)	522, 661, 981
HpyCH4V	TGCA	3 cut(s)	228, 339, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	559, 578
HpyF3I	CTNAG	7 cut(s)	126, 531, 554, 729, 884, 972, 1022
HpySE526I	ACGT	3 cut(s)	522, 661, 981
Hsp92II	CATG	3 cut(s)	242, 512, 997
HspAI	GCGC	1 cut(s)	541
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	8 cut(s)	3, 43, 100, 175, 471, 517, 787, 904
LmnI	GCTCC	2 cut(s)	788, 1006
Lsp1109I	GCAGC	4 cut(s)	469, 639, 767, 936
LweI	GCATC	2 cut(s)	619, 660
MabI	ACCWGGT	1 cut(s)	589
MaeI	CTAG	6 cut(s)	495, 527, 584, 674, 813, 953
MaeII	ACGT	3 cut(s)	522, 661, 981
MaeIII	GTNAC	2 cut(s)	212, 490
MalI	GATC	8 cut(s)	5, 45, 102, 177, 473, 519, 789, 906
MboI	GATC	8 cut(s)	3, 43, 100, 175, 471, 517, 787, 904
MboII	GAAGA	6 cut(s)	53, 110, 264, 613, 679, 733
MflI	RGATCY	2 cut(s)	43, 100
MlsI	TGGCCA	1 cut(s)	465
MluNI	TGGCCA	1 cut(s)	465
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	9 cut(s)	168, 280, 289, 292, 358, 471, 670, 766, 823
Mox20I	TGGCCA	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	1 cut(s)	918
MslI	CAYNNNNRTG	2 cut(s)	165, 998
Msp20I	TGGCCA	1 cut(s)	465
MspA1I	CMGCKG	3 cut(s)	562, 652, 780
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	3 cut(s)	371, 455, 591
MvaI	CCWGG	2 cut(s)	371, 591
MwoI	GCNNNNNNNGC	2 cut(s)	559, 578
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	2 cut(s)	322, 460
NdeII	GATC	8 cut(s)	3, 43, 100, 175, 471, 517, 787, 904
NlaIII	CATG	3 cut(s)	242, 512, 997
NmeAIII	GCCGAG	1 cut(s)	569
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	1 cut(s)	512
PagI	TCATGA	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	58, 843
PkrI	GCNGC	5 cut(s)	484, 654, 688, 782, 926
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	369, 589
PspGI	CCWGG	2 cut(s)	369, 589
PspPI	GGNCC	1 cut(s)	367
PspPPI	RGGWCCY	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	2 cut(s)	43, 100
PvuII	CAGCTG	2 cut(s)	652, 780
RsaI	GTAC	3 cut(s)	588, 734, 989
RsaNI	GTAC	3 cut(s)	587, 733, 988
RseI	CAYNNNNRTG	2 cut(s)	165, 998
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	5 cut(s)	483, 653, 687, 781, 925
Sau3AI	GATC	8 cut(s)	3, 43, 100, 175, 471, 517, 787, 904
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	734
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	3 cut(s)	371, 455, 591
SexAI	ACCWGGT	1 cut(s)	589
SfaNI	GCATC	2 cut(s)	619, 660
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	165, 998
SmlI	CTYRAG	2 cut(s)	513, 1037
SmoI	CTYRAG	2 cut(s)	513, 1037
SsiI	CCGC	2 cut(s)	562, 686
SspMI	CTAG	6 cut(s)	495, 527, 584, 674, 813, 953
StyD4I	CCNGG	3 cut(s)	369, 453, 589
StyI	CCWWGG	2 cut(s)	260, 466
TaaI	ACNGT	8 cut(s)	212, 256, 349, 490, 700, 851, 964, 1000
TaiI	ACGT	3 cut(s)	525, 664, 984
TaqI	TCGA	2 cut(s)	774, 807
TatI	WGTACW	2 cut(s)	732, 987
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	2 cut(s)	58, 843
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TscAI	CASTG	5 cut(s)	624, 714, 854, 967, 1005
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	4 cut(s)	482, 652, 780, 924
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	4 cut(s)	81, 86, 556, 680
TspRI	CASTG	5 cut(s)	624, 714, 854, 967, 1005
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	3 cut(s)	73, 106, 391
XbaI	TCTAGA	1 cut(s)	952
XceI	RCATGY	1 cut(s)	512
XspI	CTAG	6 cut(s)	495, 527, 584, 674, 813, 953
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.