Rorug02G0161300

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000792
Physical Location & Seq
Reverse (-)
14412995 .. 14415778
2784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0161300.1

Sequence Viewer

Length: 1566 bp
ATGGCTTCTTCGTATCTTCGCCGGAAATGTGATGATCACTGGCCAAGATTGTCTTCCACCACTCCCCGGCGTTTTCTCAAGGTTATTTCAGACGACACTTCCAGAGACAGAAAGCTCGGGATTCCAAAGAGCTTTTTGGATAAATATGGAGAAGATCTATCAAATCTAGTATACTTTAAGCTCCCATGTGGTCCAGAATGGGAAATAGGACTCACAAGCTACAATAAAGAGGTTTGGTTTAGGAAAGGCTGGCCAGAGTTCTCTAAGTTTCACTCTCTTGAGAAAGGCTACTCGCTACTTTTCGGGTATGAAGGGGATTCTAGGTTTCAGGTTTCCATATTTGATGGAAGCAACAACATGGAGATTGACTATACCACAAGAATGCTCGAAAGTGAAGAAGGTGATCAAGATGATGATATATCTCTTGAGATCTCAGAGGATGTTCGACGAACTGCTCTGTCTCACAAGAAAAACAGAACAGTTTTGAGTCCTAAAGCAGAAATCAATGTCAATTTTGAGGAGCGTGTGAAGAAAGAGACACATTGGTCAAAATCAGAAATGAAAAGGAAACACGATTTTCCAGCGAAAAGAGATGGGGGAGGCACATCAAGCACTCAAAGATGCCGAAAACAGACACCAAGAGTTTTTGGGAGAGCTAAATCTTACAAGCGTTCTTTCAAAGTTCCCATGCATAGCTCTTATATCATTCAAAATTTTTTGTGGCTGCCTAAAACGTTTGTCCAGACACATCTTCTTAAGCAGCCTAGTAATGCTATACTTCAAGTTTCGGGTGGAAGGAAAACTTGGCCTGTTAAATTGACATATGAAGAAACAAAAGGAAGAGCCAAATTTCAGTCTGGTTGGACTGACTTTGTGAGAGACAAGAATTTAAAAGATGGAGATGTGTGTGAGTTTGTGTTGATTGACAGCAACAGACTTGTATTTGAAGTTAGGATAAATACTGCAAATCGCACCTTATCACCAGGGCCTGCAGACATTGATGATGGTGATGCTGAGGATGATGAAGATGAAGATGAAGAGGATAGTGATGATGAATCAATTGAAATCTTGGATCATTTTCCACCTCATCTCAAAAGAAAGGAGAAATCTCCATTGGCATCCAAGATTCATAAGACAATGAGACCCAGTTCCAGAACTCAAAAATTCCCTGAAGGAGGACCTGAGGTTCCTAGGAAGATGCCTGGTCCTGTTATGGCAAGTTCTGGAAAATACATAGCTCTTCAGAGAGCTAATGGTTTCAAATCTGCAAACCCTGATTTCAGGATTTCATTACATTCCTCCTATATCACTGGACATTATTTGTATTTGCCAGCCAAGTTTGCCAATAGATATCTTGTTAAGCAGCCTAGACATGCCATCCTTCGGGTTGCAAGTAAAAGAACTTGGTCTGTCAACGTACGTTATGCTGCAGCAAGAACCACATTCCAAACTGGTTGGTTTGAATTTGTGCAAGATAATGATTTGAAAGAGGGTGATGCTTGTATTTTCATGTTAACCGACAACATCAAGGTTGTATTTGATGTTGTCTTTTTCCGAGCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

521

Amino Acids

60.17

Weight (kDa)

9.12

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 25 - 116 3.9e-13 B3 DNA binding domain
B3 PF02362 226 - 319 1.6e-16 B3 DNA binding domain
B3 PF02362 429 - 510 2.7e-16 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 544
AccI GTMKAC 1 cut(s) 171
AclI AACGTT 1 cut(s) 734
AclWI GGATC 1 cut(s) 1080
AcoI YGGCCR 2 cut(s) 41, 251
AcsI RAATTY 5 cut(s) 712, 848, 886, 1163, 1463
AcuI CTGAAG 2 cut(s) 1191, 1226
AfaI GTAC 1 cut(s) 1419
AfiI CCNNNNNNNGG 3 cut(s) 66, 1175, 1383
AflII CTTAAG 1 cut(s) 755
AgsI TTSAA 8 cut(s) 679, 710, 782, 947, 1064, 1261, 1463, 1486
AjnI CCWGG 2 cut(s) 982, 1201
AjuI GAANNNNNNNTTGG 6 cut(s) 37, 69, 787, 819, 1097, 1129
AloI GAACNNNNNNTCC 2 cut(s) 1170, 1202
AluBI AGCT 8 cut(s) 115, 132, 181, 219, 656, 696, 1238, 1250
AluI AGCT 8 cut(s) 115, 132, 181, 219, 656, 696, 1238, 1250
Alw26I GTCTC 5 cut(s) 99, 465, 530, 873, 1135
AlwI GGATC 1 cut(s) 1080
AlwNI CAGNNNCTG 1 cut(s) 989
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 4 cut(s) 41, 251, 806, 986
ApeKI GCWGC 5 cut(s) 724, 760, 1363, 1427, 1430
ApoI RAATTY 5 cut(s) 712, 848, 886, 1163, 1463
AspA2I CCTAGG 1 cut(s) 1190
AspS9I GGNCC 4 cut(s) 191, 986, 1178, 1205
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 4 cut(s) 413, 972, 1019, 1505
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 3 cut(s) 191, 1178, 1205
AvrII CCTAGG 1 cut(s) 1190
AxyI CCTNAGG 1 cut(s) 1182
BalI TGGCCA 2 cut(s) 43, 253
BbsI GAAGAC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 5 cut(s) 711, 772, 1375, 1414, 1442
BccI CCATC 5 cut(s) 338, 587, 890, 998, 1385
BciT130I CCWGG 2 cut(s) 984, 1203
BclI TGATCA 2 cut(s) 34, 403
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 5 cut(s) 99, 465, 530, 873, 1135
BfaI CTAG 5 cut(s) 167, 321, 765, 1191, 1368
BfmI CTRYAG 2 cut(s) 990, 1428
BfrI CTTAAG 1 cut(s) 755
BglII AGATCT 2 cut(s) 154, 429
BisI GCNGC 5 cut(s) 725, 761, 1364, 1428, 1431
BlnI CCTAGG 1 cut(s) 1190
BlsI GCNGC 5 cut(s) 726, 762, 1365, 1429, 1432
Bme1390I CCNGG 3 cut(s) 67, 984, 1203
Bme18I GGWCC 3 cut(s) 191, 1178, 1205
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 4 cut(s) 191, 986, 1178, 1205
BmiI GGNNCC 1 cut(s) 1188
BmrFI CCNGG 3 cut(s) 67, 984, 1203
BmrI ACTGGG 1 cut(s) 1140
BmsI GCATC 5 cut(s) 611, 1000, 1127, 1188, 1486
BmuI ACTGGG 1 cut(s) 1140
BpiI GAAGAC 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 3 cut(s) 62, 299, 446
BpuMI CCSGG 1 cut(s) 67
BsaI GGTCTC 1 cut(s) 1135
BsaJI CCNNGG 3 cut(s) 65, 983, 1190
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 1175, 1383
Bse1I ACTGG 4 cut(s) 44, 1146, 1315, 1456
Bse21I CCTNAGG 1 cut(s) 1182
BseBI CCWGG 2 cut(s) 984, 1203
BseDI CCNNGG 3 cut(s) 65, 983, 1190
BseGI GGATG 4 cut(s) 445, 1024, 1118, 1377
BseLI CCNNNNNNNGG 3 cut(s) 66, 1175, 1383
BseMII CTCAG 3 cut(s) 447, 1005, 1173
BseNI ACTGG 4 cut(s) 44, 1146, 1315, 1456
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 5 cut(s) 711, 772, 1375, 1414, 1442
BshFI GGCC 4 cut(s) 43, 253, 808, 988
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 22, 67
BsiWI CGTACG 1 cut(s) 1417
BslI CCNNNNNNNGG 3 cut(s) 66, 1175, 1383
BsmAI GTCTC 5 cut(s) 99, 465, 530, 873, 1135
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 4 cut(s) 43, 253, 808, 988
Bso31I GGTCTC 1 cut(s) 1135
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 5 cut(s) 34, 154, 403, 429, 1072
BspANI GGCC 4 cut(s) 43, 253, 808, 988
BspCNI CTCAG 3 cut(s) 446, 1006, 1174
BspLI GGNNCC 1 cut(s) 1188
BspMAI CTGCAG 2 cut(s) 994, 1432
BspPI GGATC 1 cut(s) 1080
BspQI GCTCTTC 2 cut(s) 835, 1245
BspTI CTTAAG 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 1135
BsrI ACTGG 4 cut(s) 44, 1146, 1315, 1456
BssECI CCNNGG 3 cut(s) 65, 983, 1190
BssMI GATC 5 cut(s) 34, 154, 403, 429, 1072
BssNAI GTATAC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 1190
Bst1107I GTATAC 1 cut(s) 172
Bst2UI CCWGG 2 cut(s) 984, 1203
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 3 cut(s) 835, 1032, 1245
BstAFI CTTAAG 1 cut(s) 755
BstC8I GCNNGC 3 cut(s) 251, 990, 1332
BstDEI CTNAG 4 cut(s) 264, 433, 1014, 1182
BstENI CCTNNNNNAGG 1 cut(s) 1173
BstF5I GGATG 4 cut(s) 445, 1024, 1118, 1377
BstKTI GATC 5 cut(s) 37, 157, 406, 432, 1075
BstMAI GTCTC 5 cut(s) 99, 465, 530, 873, 1135
BstMBI GATC 5 cut(s) 34, 154, 403, 429, 1072
BstMWI GCNNNNNNNGC 2 cut(s) 609, 1340
BstNI CCWGG 2 cut(s) 984, 1203
BstNSI RCATGY 1 cut(s) 1376
BstSCI CCNGG 3 cut(s) 65, 982, 1201
BstSFI CTRYAG 2 cut(s) 990, 1428
BstV1I GCAGC 5 cut(s) 711, 772, 1375, 1414, 1442
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 154, 429
BstYI RGATCY 2 cut(s) 154, 429
BstZ17I GTATAC 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 1182
BsuRI GGCC 4 cut(s) 43, 253, 808, 988
BtsCI GGATG 4 cut(s) 445, 1024, 1118, 1377
BtsIMutI CAGTG 2 cut(s) 37, 1308
Cac8I GCNNGC 3 cut(s) 251, 990, 1332
CaiI CAGNNNCTG 1 cut(s) 989
Cfr13I GGNCC 4 cut(s) 191, 986, 1178, 1205
Csp6I GTAC 1 cut(s) 1418
CviAII CATG 5 cut(s) 186, 358, 688, 1373, 1510
CviQI GTAC 1 cut(s) 1418
DdeI CTNAG 4 cut(s) 264, 433, 1014, 1182
DpnI GATC 5 cut(s) 36, 156, 405, 431, 1074
DpnII GATC 5 cut(s) 34, 154, 403, 429, 1072
DraI TTTAAA 1 cut(s) 891
DrdI GACNNNNNNGTC 1 cut(s) 544
DseDI GACNNNNNNGTC 1 cut(s) 544
EaeI YGGCCR 2 cut(s) 41, 251
Eam1104I CTCTTC 3 cut(s) 835, 1032, 1245
EarI CTCTTC 3 cut(s) 835, 1032, 1245
Eco130I CCWWGG 1 cut(s) 1190
Eco31I GGTCTC 1 cut(s) 1135
Eco32I GATATC 1 cut(s) 1352
Eco47I GGWCC 3 cut(s) 191, 1178, 1205
Eco57I CTGAAG 2 cut(s) 1191, 1226
Eco81I CCTNAGG 1 cut(s) 1182
Eco88I CYCGRG 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 1173
EcoO109I RGGNCCY 2 cut(s) 986, 1178
EcoRII CCWGG 2 cut(s) 982, 1201
EcoRV GATATC 1 cut(s) 1352
EcoT14I CCWWGG 1 cut(s) 1190
EcoT22I ATGCAT 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 1190
FaeI CATG 5 cut(s) 189, 361, 691, 1376, 1513
FalI AAGNNNNNCTT 4 cut(s) 37, 69, 787, 819
FatI CATG 5 cut(s) 185, 357, 687, 1372, 1509
FauNDI CATATG 1 cut(s) 823
FbaI TGATCA 2 cut(s) 34, 403
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 5 cut(s) 725, 761, 1364, 1428, 1431
FokI GGATG 4 cut(s) 452, 1031, 1105, 1364
Fsp4HI GCNGC 5 cut(s) 725, 761, 1364, 1428, 1431
FspBI CTAG 5 cut(s) 167, 321, 765, 1191, 1368
GluI GCNGC 5 cut(s) 725, 761, 1364, 1428, 1431
HaeIII GGCC 4 cut(s) 43, 253, 808, 988
HapII CCGG 2 cut(s) 22, 67
Hin1II CATG 5 cut(s) 189, 361, 691, 1376, 1513
HincII GTYRAC 2 cut(s) 1414, 1515
HindII GTYRAC 2 cut(s) 1414, 1515
HinfI GANTC 6 cut(s) 121, 210, 317, 487, 1055, 1126
HpaI GTTAAC 1 cut(s) 1515
HpaII CCGG 2 cut(s) 22, 67
HphI GGTGA 4 cut(s) 413, 972, 1019, 1505
Hpy166II GTNNAC 3 cut(s) 172, 1414, 1515
Hpy188I TCNGA 5 cut(s) 91, 436, 556, 1245, 1556
Hpy8I GTNNAC 3 cut(s) 172, 1414, 1515
Hpy99I CGWCG 1 cut(s) 450
HpyAV CCTTC 5 cut(s) 305, 392, 789, 1166, 1391
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 3 cut(s) 734, 1416, 1420
HpyCH4V TGCA 7 cut(s) 691, 965, 992, 1268, 1391, 1430, 1471
HpyF10VI GCNNNNNNNGC 2 cut(s) 609, 1340
HpyF3I CTNAG 4 cut(s) 264, 433, 1014, 1182
HpySE526I ACGT 3 cut(s) 734, 1416, 1420
Hsp92II CATG 5 cut(s) 189, 361, 691, 1376, 1513
Ksp22I TGATCA 2 cut(s) 34, 403
KspAI GTTAAC 1 cut(s) 1515
Kzo9I GATC 5 cut(s) 34, 154, 403, 429, 1072
LguI GCTCTTC 2 cut(s) 835, 1245
LmnI GCTCC 2 cut(s) 186, 520
Lsp1109I GCAGC 5 cut(s) 711, 772, 1375, 1414, 1442
LweI GCATC 5 cut(s) 611, 1000, 1127, 1188, 1486
MaeI CTAG 5 cut(s) 167, 321, 765, 1191, 1368
MaeII ACGT 3 cut(s) 734, 1416, 1420
MalI GATC 5 cut(s) 36, 156, 405, 431, 1074
MboI GATC 5 cut(s) 34, 154, 403, 429, 1072
MfeI CAATTG 1 cut(s) 1059
MflI RGATCY 2 cut(s) 154, 429
MlsI TGGCCA 2 cut(s) 43, 253
MluCI AATT 8 cut(s) 511, 712, 815, 848, 886, 1059, 1163, 1463
MluNI TGGCCA 2 cut(s) 43, 253
MlyI GAGTC 2 cut(s) 204, 496
MmeI TCCRAC 1 cut(s) 842
Mox20I TGGCCA 2 cut(s) 43, 253
Mph1103I ATGCAT 1 cut(s) 693
MscI TGGCCA 2 cut(s) 43, 253
MseI TTAA 6 cut(s) 177, 756, 813, 890, 1359, 1514
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 2 cut(s) 43, 253
MspCI CTTAAG 1 cut(s) 755
MspI CCGG 2 cut(s) 22, 67
MspR9I CCNGG 3 cut(s) 67, 984, 1203
MunI CAATTG 1 cut(s) 1059
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 2 cut(s) 984, 1203
MwoI GCNNNNNNNGC 2 cut(s) 609, 1340
NciI CCSGG 1 cut(s) 67
NdeI CATATG 1 cut(s) 823
NdeII GATC 5 cut(s) 34, 154, 403, 429, 1072
NlaIII CATG 5 cut(s) 189, 361, 691, 1376, 1513
NlaIV GGNNCC 1 cut(s) 1188
NsiI ATGCAT 1 cut(s) 693
NspI RCATGY 1 cut(s) 1376
PciSI GCTCTTC 2 cut(s) 835, 1245
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 4 cut(s) 121, 317, 1055, 1126
Pfl23II CGTACG 1 cut(s) 1417
PkrI GCNGC 5 cut(s) 726, 762, 1365, 1429, 1432
PleI GAGTC 2 cut(s) 204, 495
PpsI GAGTC 2 cut(s) 204, 495
PpuMI RGGWCCY 1 cut(s) 1178
Psp1406I AACGTT 1 cut(s) 734
Psp5II RGGWCCY 1 cut(s) 1178
Psp6I CCWGG 2 cut(s) 982, 1201
PspGI CCWGG 2 cut(s) 982, 1201
PspLI CGTACG 1 cut(s) 1417
PspN4I GGNNCC 1 cut(s) 1188
PspPI GGNCC 4 cut(s) 191, 986, 1178, 1205
PspPPI RGGWCCY 1 cut(s) 1178
PstI CTGCAG 2 cut(s) 994, 1432
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 2 cut(s) 154, 429
RsaI GTAC 1 cut(s) 1419
RsaNI GTAC 1 cut(s) 1418
RseI CAYNNNNRTG 1 cut(s) 380
SapI GCTCTTC 2 cut(s) 835, 1245
SaqAI TTAA 6 cut(s) 177, 756, 813, 890, 1359, 1514
SatI GCNGC 5 cut(s) 725, 761, 1364, 1428, 1431
Sau3AI GATC 5 cut(s) 34, 154, 403, 429, 1072
Sau96I GGNCC 4 cut(s) 191, 986, 1178, 1205
SchI GAGTC 2 cut(s) 204, 496
ScrFI CCNGG 3 cut(s) 67, 984, 1203
SfaNI GCATC 5 cut(s) 611, 1000, 1127, 1188, 1486
SfcI CTRYAG 2 cut(s) 990, 1428
SinI GGWCC 3 cut(s) 191, 1178, 1205
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 4 cut(s) 77, 278, 425, 755
SmoI CTYRAG 4 cut(s) 77, 278, 425, 755
Sse9I AATT 8 cut(s) 511, 712, 815, 848, 886, 1059, 1163, 1463
SspMI CTAG 5 cut(s) 167, 321, 765, 1191, 1368
StyD4I CCNGG 3 cut(s) 65, 982, 1201
StyI CCWWGG 1 cut(s) 1190
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 3 cut(s) 737, 1419, 1423
TaqI TCGA 2 cut(s) 387, 445
TasI AATT 8 cut(s) 511, 712, 815, 848, 886, 1059, 1163, 1463
TfiI GAWTC 4 cut(s) 121, 317, 1055, 1126
Tru1I TTAA 6 cut(s) 177, 756, 813, 890, 1359, 1514
Tru9I TTAA 6 cut(s) 177, 756, 813, 890, 1359, 1514
TscAI CASTG 2 cut(s) 44, 1315
TseI GCWGC 5 cut(s) 724, 760, 1363, 1427, 1430
TspRI CASTG 2 cut(s) 44, 1315
Vha464I CTTAAG 1 cut(s) 755
VpaK11BI GGWCC 3 cut(s) 191, 1178, 1205
XagI CCTNNNNNAGG 1 cut(s) 1173
XapI RAATTY 5 cut(s) 712, 848, 886, 1163, 1463
XceI RCATGY 1 cut(s) 1376
XmaJI CCTAGG 1 cut(s) 1190
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 5 cut(s) 167, 321, 765, 1191, 1368
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.