Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

20802738 .. 20804456

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGATTCTCAGAATAAACAAGAAAAGGGGGATCCTTTGTTCCATAATCTTTATTCATATAATGGACGTAGCATCAGCAAAATGGTTTTCGGATTTGGGAATGGATGATTACAACTTCATTCATGAAGGCTTTACAGCACAGGACATAGCAACTGCCCTTGGGGGAAATTTCAAGCAATCTTTCTCCAACGAGAGTTATTCCTCTTACCCAACTTTGACTACCCAAAAATCCCCCACCACCACATTAAGTGGTGGTTCATCTATCAATGAGACTAATTCTCAGACGAGCTTTGAGAGACCAGCCAAACTGGTCGAGACCAACAGCTGGAACTCTGCCATTACAGAACATGTTTCACCAAAGCCTTCTTGCAAGTCTTATTCCTCCCACATTCTTTCTTTCGAGAACACAAATTTGAATTCTTCACCACCTTCCAAGCCTCATCAACAGTTCTCTAATGCTTTTGACACTACCCTGAAGCCAAAGGATGAGGCACCATCCGAAATATGTATGCAGTTTGAGAACCAAGGCTATGGGACTAATAAGAGGCCTTACTCAATGACTAGAACTCCTTCTCATGCTCAAGACCACATAATGGCTGAGAGGAAGAGAAGAGAAAAGCTCAGTCAGAGATTCATTGCTCTTTCTGCCATTGTTCCTGGACTAAAAAAGATGGACAAAGCTTCTGTTCTTGGAGATGCAATCAAGTATGTGAAACAGCTCCAAGAAAGTGTCAAAGTTCTTGAGGAACAAACCAAGAAGAGAACCGTGGAATCCGTGGTGTTTGTGAAGAAGACTCAGCTGGTCTCTTCTGATGATGACACTTCTTCATGCGATGAGAACTTTGATGGTCGCAGCTCTGATGAATCACTCCCGCAAATTGAAGCAAGAGTTTCGGAGAAGGATGTATTGATTCGAATTCACTGCGAGAACCAGAAAGGATATGTGGTGAAAATTCTAAGCGAAATAGAAAAGCTTCAATTATCTGTGGTCAATAGCAGTGTCTTGCCATTTGGAAAGTCCACTCTAGACATAACCATTATTGCTCAGATGGATGATGAATGCAACATGACGGTGACGGATCTTGCCAAAAGCTTGAGAGTGGCTCTATTGACGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

374

Amino Acids

41.68

Weight (kDa)

6.72

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	196 - 241	1.5e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	200 - 246	5.5e-06	Transcription factor SAC51 bHLH domain
bHLH-TF_ACT-like_plant	PF22754	297 - 353	4.1e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	490
AccB7I	CCANNNNNTGG	2 cut(s)	324, 592
AciI	CCGC	1 cut(s)	872
AclWI	GGATC	3 cut(s)	25, 38, 1086
AcsI	RAATTY	5 cut(s)	166, 409, 415, 915, 951
AcuI	CTGAAG	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	324, 592
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	4 cut(s)	172, 415, 881, 977
AjnI	CCWGG	1 cut(s)	655
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	9 cut(s)	288, 324, 619, 680, 718, 799, 855, 973, 1092
AluI	AGCT	9 cut(s)	288, 324, 619, 680, 718, 799, 855, 973, 1092
Alw26I	GTCTC	4 cut(s)	263, 289, 308, 808
AlwI	GGATC	3 cut(s)	25, 38, 1086
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	1 cut(s)	852
ApoI	RAATTY	5 cut(s)	166, 409, 415, 915, 951
Asp700I	GAANNNNTTC	2 cut(s)	568, 972
AsuHPI	GGTGA	4 cut(s)	345, 414, 958, 1084
AsuII	TTCGAA	1 cut(s)	913
BamHI	GGATCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	797
BbvI	GCAGC	1 cut(s)	864
BccI	CCATC	4 cut(s)	502, 664, 839, 1042
BcgI	CGANNNNNNTGC	4 cut(s)	873, 903, 907, 937
BciT130I	CCWGG	1 cut(s)	657
BcoDI	GTCTC	4 cut(s)	263, 289, 308, 808
BfaI	CTAG	2 cut(s)	561, 1025
BisI	GCNGC	1 cut(s)	853
BlsI	GCNGC	1 cut(s)	854
Bme1390I	CCNGG	1 cut(s)	657
BmiI	GGNNCC	2 cut(s)	32, 492
BmrFI	CCNGG	1 cut(s)	657
BmsI	GCATC	2 cut(s)	80, 685
BpiI	GAAGAC	1 cut(s)	797
BplI	GAGNNNNNCTC	4 cut(s)	603, 635, 1087, 1119
Bpu14I	TTCGAA	1 cut(s)	913
BpuEI	CTTGAG	3 cut(s)	564, 761, 1114
BsaI	GGTCTC	3 cut(s)	289, 308, 808
BsaJI	CCNNGG	4 cut(s)	157, 523, 765, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 592
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	4 cut(s)	157, 523, 765, 774
BseGI	GGATG	5 cut(s)	109, 490, 494, 907, 1057
BseLI	CCNNNNNNNGG	2 cut(s)	324, 592
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	6 cut(s)	22, 293, 588, 634, 809, 1058
BseNI	ACTGG	1 cut(s)	312
BseXI	GCAGC	1 cut(s)	864
BshFI	GGCC	1 cut(s)	547
BshNI	GGYRCC	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	324, 592
BsmAI	GTCTC	4 cut(s)	263, 289, 308, 808
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	1064
BsnI	GGCC	1 cut(s)	547
Bso31I	GGTCTC	3 cut(s)	289, 308, 808
Bsp119I	TTCGAA	1 cut(s)	913
Bsp143I	GATC	2 cut(s)	30, 1078
BspACI	CCGC	1 cut(s)	872
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	6 cut(s)	21, 292, 589, 633, 808, 1057
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	32, 492
BspPI	GGATC	3 cut(s)	25, 38, 1086
BspT104I	TTCGAA	1 cut(s)	913
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	3 cut(s)	289, 308, 808
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	4 cut(s)	157, 523, 765, 774
BssMI	GATC	2 cut(s)	30, 1078
BssT1I	CCWWGG	2 cut(s)	157, 523
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	3 cut(s)	447, 766, 1072
Bst6I	CTCTTC	4 cut(s)	599, 604, 752, 811
BstBI	TTCGAA	1 cut(s)	913
BstDEI	CTNAG	7 cut(s)	8, 279, 597, 620, 795, 956, 1044
BstDSI	CCRYGG	2 cut(s)	765, 774
BstF5I	GGATG	5 cut(s)	109, 490, 494, 907, 1057
BstKTI	GATC	2 cut(s)	33, 1081
BstMAI	GTCTC	4 cut(s)	263, 289, 308, 808
BstMBI	GATC	2 cut(s)	30, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	655
BstV1I	GCAGC	1 cut(s)	864
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	2 cut(s)	30, 1078
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	2 cut(s)	30, 1078
BsuRI	GGCC	1 cut(s)	547
BtgI	CCRYGG	2 cut(s)	765, 774
BtgZI	GCGATG	1 cut(s)	846
BtsCI	GGATG	5 cut(s)	109, 490, 494, 907, 1057
BtsI	GCAGTG	2 cut(s)	919, 1003
BtsIMutI	CAGTG	2 cut(s)	919, 1003
CciI	TCATGA	1 cut(s)	121
CviAII	CATG	6 cut(s)	122, 347, 575, 828, 1066, 1117
DdeI	CTNAG	7 cut(s)	8, 279, 597, 620, 795, 956, 1044
DpnI	GATC	2 cut(s)	32, 1080
DpnII	GATC	2 cut(s)	30, 1078
Eam1104I	CTCTTC	4 cut(s)	599, 604, 752, 811
EarI	CTCTTC	4 cut(s)	599, 604, 752, 811
Eco130I	CCWWGG	2 cut(s)	157, 523
Eco147I	AGGCCT	1 cut(s)	547
Eco31I	GGTCTC	3 cut(s)	289, 308, 808
Eco57I	CTGAAG	1 cut(s)	494
EcoRI	GAATTC	2 cut(s)	415, 915
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	2 cut(s)	157, 523
ErhI	CCWWGG	2 cut(s)	157, 523
FaeI	CATG	6 cut(s)	125, 350, 578, 831, 1069, 1120
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	6 cut(s)	121, 346, 574, 827, 1065, 1116
FauI	CCCGC	1 cut(s)	879
Fnu4HI	GCNGC	1 cut(s)	853
FokI	GGATG	5 cut(s)	116, 481, 497, 914, 1064
Fsp4HI	GCNGC	1 cut(s)	853
FspBI	CTAG	2 cut(s)	561, 1025
GluI	GCNGC	1 cut(s)	853
HaeIII	GGCC	1 cut(s)	547
Hin1II	CATG	6 cut(s)	125, 350, 578, 831, 1069, 1120
HindIII	AAGCTT	3 cut(s)	678, 971, 1090
HinfI	GANTC	6 cut(s)	4, 630, 770, 793, 863, 910
HphI	GGTGA	4 cut(s)	345, 414, 958, 1084
Hpy166II	GTNNAC	1 cut(s)	1020
Hpy188I	TCNGA	9 cut(s)	11, 91, 282, 499, 627, 811, 859, 895, 1047
Hpy188III	TCNNGA	6 cut(s)	122, 313, 400, 581, 740, 1025
Hpy8I	GTNNAC	1 cut(s)	1020
HpyAV	CCTTC	5 cut(s)	119, 372, 438, 579, 892
HpyCH4III	ACNGT	3 cut(s)	447, 766, 1072
HpyCH4IV	ACGT	2 cut(s)	66, 1112
HpyCH4V	TGCA	4 cut(s)	369, 511, 698, 1062
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	7 cut(s)	8, 279, 597, 620, 795, 956, 1044
HpySE526I	ACGT	2 cut(s)	66, 1112
Hsp92II	CATG	6 cut(s)	125, 350, 578, 831, 1069, 1120
Kzo9I	GATC	2 cut(s)	30, 1078
LmnI	GCTCC	1 cut(s)	723
LpnPI	CCDG	9 cut(s)	125, 293, 310, 312, 485, 642, 669, 785, 944
Lsp1109I	GCAGC	1 cut(s)	864
LweI	GCATC	2 cut(s)	80, 685
MaeI	CTAG	2 cut(s)	561, 1025
MaeII	ACGT	2 cut(s)	66, 1112
MaeIII	GTNAC	1 cut(s)	1072
MalI	GATC	2 cut(s)	32, 1080
MboI	GATC	2 cut(s)	30, 1078
MboII	GAAGA	8 cut(s)	411, 616, 621, 769, 798, 799, 802, 816
MflI	RGATCY	2 cut(s)	30, 1078
MluCI	AATT	8 cut(s)	166, 274, 409, 415, 876, 915, 951, 977
MlyI	GAGTC	1 cut(s)	787
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	7 cut(s)	211, 391, 447, 481, 537, 594, 736
MroXI	GAANNNNTTC	2 cut(s)	568, 972
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	1070
MspA1I	CMGCKG	2 cut(s)	324, 799
MspR9I	CCNGG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	1064
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	1 cut(s)	644
NdeII	GATC	2 cut(s)	30, 1078
NlaIII	CATG	6 cut(s)	125, 350, 578, 831, 1069, 1120
NlaIV	GGNNCC	2 cut(s)	32, 492
NmuCI	GTSAC	1 cut(s)	1072
NspI	RCATGY	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	913
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	547
PciI	ACATGT	1 cut(s)	346
PctI	GAATGC	1 cut(s)	1064
PdmI	GAANNNNTTC	2 cut(s)	568, 972
PfeI	GAWTC	5 cut(s)	4, 630, 770, 863, 910
PflMI	CCANNNNNTGG	2 cut(s)	324, 592
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	1 cut(s)	854
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PscI	ACATGT	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	32, 492
PsuI	RGATCY	2 cut(s)	30, 1078
PvuII	CAGCTG	2 cut(s)	324, 799
RseI	CAYNNNNRTG	1 cut(s)	1070
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	853
Sau3AI	GATC	2 cut(s)	30, 1078
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	1 cut(s)	657
SfaNI	GCATC	2 cut(s)	80, 685
SfuI	TTCGAA	1 cut(s)	913
SmiMI	CAYNNNNRTG	1 cut(s)	1070
SmlI	CTYRAG	3 cut(s)	579, 740, 1093
SmoI	CTYRAG	3 cut(s)	579, 740, 1093
Sse9I	AATT	8 cut(s)	166, 274, 409, 415, 876, 915, 951, 977
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	1 cut(s)	872
SspMI	CTAG	2 cut(s)	561, 1025
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	655
StyI	CCWWGG	2 cut(s)	157, 523
TaaI	ACNGT	3 cut(s)	447, 766, 1072
TaiI	ACGT	2 cut(s)	69, 1115
TaqI	TCGA	3 cut(s)	312, 399, 913
TasI	AATT	8 cut(s)	166, 274, 409, 415, 876, 915, 951, 977
TfiI	GAWTC	5 cut(s)	4, 630, 770, 863, 910
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	2 cut(s)	926, 1003
TseFI	GTSAC	1 cut(s)	1072
TseI	GCWGC	1 cut(s)	852
Tsp45I	GTSAC	1 cut(s)	1072
TspGWI	ACGGA	2 cut(s)	763, 1091
TspRI	CASTG	2 cut(s)	926, 1003
Van91I	CCANNNNNTGG	2 cut(s)	324, 592
XapI	RAATTY	5 cut(s)	166, 409, 415, 915, 951
XbaI	TCTAGA	1 cut(s)	1024
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	2 cut(s)	568, 972
XspI	CTAG	2 cut(s)	561, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.