Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009451.1

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

4173 .. 5718

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009451.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atggagatttcgtcgataagaggactaactgaactgggaatggaggatcccttctttgtcaaccagtggcacatgaactctctcgatgagctcagcatgctaccattatcagctgcctttggagagaatttgcaacagtctcactgccacccgattttaaaccctaaatcttctaccaatacttctctgagttccattgatagacccatgaaacagctcaaacccaacaactggaatccatcgaaccaccagtttgcttccttgccaaaccttctctcctttgtcaattcatacaacacaaaccaagtgggggttgttaagcctaaggaggagacggcagtacgttcaaagaacatcaaccatttcccttctgatatattggtttctcaaggttcatttggcaaccaaaactcttcattgaaggccagtcagggaacacacaggatcaacacaaacactaggctttcgcaaactcaagatcacataattgcagaaaggaagcggcgagagaagcttagtcaacggttcattgctttagctgcaatggttcctggcttaaaaaagacggacaaggcttctgttctaggagattctatcaagtacatcaagcaactacaggagaaggtaaagacacttgaggagcagacgagagtgaaaaagatggaatcagtcgtctctgtgaaaagatcacagctcaatattgcaaatgatgataactcttcttcggacgataacacctccagtgtttcatttgaggagacactgccagaaattgaagcaagattctgtgacaacaatgtcctcataagagttcactgtatgaaaagaaaaggagttgttgaaaaaacaattgctgaggttgagaagctgcaactaaaattgatcaatagcagtgtcatgacatttggtagttctgttcttgatgtaaccattgttgctcagatggaagtggaattctgtctctcagtgaaggatgtcgtcaagaatctacgctcagctttcgacttgttcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

338

Amino Acids

37.94

Weight (kDa)

8.77

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	797
AccB7I	CCANNNNNTGG	1 cut(s)	231
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	3 cut(s)	41, 54, 452
AcsI	RAATTY	2 cut(s)	127, 953
AfaI	GTAC	2 cut(s)	342, 602
AfiI	CCNNNNNNNGG	2 cut(s)	231, 310
AgsI	TTSAA	4 cut(s)	348, 421, 776, 842
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	8 cut(s)	91, 113, 217, 514, 539, 694, 868, 998
AluI	AGCT	8 cut(s)	91, 113, 217, 514, 539, 694, 868, 998
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	5 cut(s)	144, 326, 679, 752, 965
AlwI	GGATC	3 cut(s)	41, 54, 452
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	113, 539, 868
ApoI	RAATTY	2 cut(s)	127, 953
AxyI	CCTNAGG	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	855
BbvI	GCAGC	3 cut(s)	100, 526, 855
BccI	CCATC	3 cut(s)	247, 655, 937
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	552
BclI	TGATCA	1 cut(s)	882
BcoDI	GTCTC	5 cut(s)	144, 326, 679, 752, 965
BfaI	CTAG	2 cut(s)	459, 584
BfmI	CTRYAG	1 cut(s)	614
BisI	GCNGC	4 cut(s)	114, 503, 540, 869
BlpI	GCTNAGC	2 cut(s)	92, 994
BlsI	GCNGC	4 cut(s)	115, 504, 541, 870
Bme1390I	CCNGG	1 cut(s)	552
BmiI	GGNNCC	2 cut(s)	48, 549
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	724
Bpu10I	CCTNAGC	1 cut(s)	855
Bpu1102I	GCTNAGC	2 cut(s)	92, 994
BpuEI	CTTGAG	3 cut(s)	372, 459, 656
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 310
Bse1I	ACTGG	6 cut(s)	39, 64, 236, 250, 426, 741
Bse21I	CCTNAGG	1 cut(s)	324
Bse3DI	GCAATG	2 cut(s)	528, 549
BseBI	CCWGG	1 cut(s)	552
BseGI	GGATG	1 cut(s)	979
BseLI	CCNNNNNNNGG	2 cut(s)	231, 310
BseMI	GCAATG	2 cut(s)	528, 549
BseMII	CTCAG	6 cut(s)	106, 179, 846, 953, 978, 1008
BseNI	ACTGG	6 cut(s)	39, 64, 236, 250, 426, 741
BseRI	GAGGAG	3 cut(s)	344, 653, 770
BseXI	GCAGC	3 cut(s)	100, 526, 855
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	231, 310
BsmAI	GTCTC	5 cut(s)	144, 326, 679, 752, 965
BsmBI	CGTCTC	2 cut(s)	326, 679
BsnI	GGCC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	5 cut(s)	46, 444, 478, 686, 882
Bsp1720I	GCTNAGC	2 cut(s)	92, 994
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	6 cut(s)	105, 180, 847, 952, 977, 1007
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	2 cut(s)	48, 549
BspPI	GGATC	3 cut(s)	41, 54, 452
BsrDI	GCAATG	2 cut(s)	528, 549
BsrI	ACTGG	6 cut(s)	39, 64, 236, 250, 426, 741
BssMI	GATC	5 cut(s)	46, 444, 478, 686, 882
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	3 cut(s)	138, 525, 818
Bst6I	CTCTTC	2 cut(s)	418, 724
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	8 cut(s)	92, 188, 324, 515, 855, 939, 964, 994
BstF5I	GGATG	1 cut(s)	979
BstKTI	GATC	5 cut(s)	49, 447, 481, 689, 885
BstMAI	GTCTC	5 cut(s)	144, 326, 679, 752, 965
BstMBI	GATC	5 cut(s)	46, 444, 478, 686, 882
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 511, 539
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	614
BstV1I	GCAGC	3 cut(s)	100, 526, 855
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	979
BtsI	GCAGTG	3 cut(s)	142, 761, 898
BtsIMutI	CAGTG	7 cut(s)	71, 142, 748, 761, 814, 898, 972
Cac8I	GCNNGC	1 cut(s)	98
CciI	TCATGA	1 cut(s)	897
Csp6I	GTAC	2 cut(s)	341, 601
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	5 cut(s)	73, 97, 208, 898, 1012
CviQI	GTAC	2 cut(s)	341, 601
DdeI	CTNAG	8 cut(s)	92, 188, 324, 515, 855, 939, 964, 994
DpnI	GATC	5 cut(s)	48, 446, 480, 688, 884
DpnII	GATC	5 cut(s)	46, 444, 478, 686, 882
DraI	TTTAAA	1 cut(s)	159
DrdI	GACNNNNNNGTC	1 cut(s)	797
DseDI	GACNNNNNNGTC	1 cut(s)	797
Eam1104I	CTCTTC	2 cut(s)	418, 724
EarI	CTCTTC	2 cut(s)	418, 724
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	953
EcoRII	CCWGG	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	93
Esp3I	CGTCTC	2 cut(s)	326, 679
FaeI	CATG	5 cut(s)	76, 100, 211, 901, 1015
FatI	CATG	5 cut(s)	72, 96, 207, 897, 1011
FbaI	TGATCA	1 cut(s)	882
Fnu4HI	GCNGC	4 cut(s)	114, 503, 540, 869
FokI	GGATG	1 cut(s)	986
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	4 cut(s)	114, 503, 540, 869
FspBI	CTAG	2 cut(s)	459, 584
GluI	GCNGC	4 cut(s)	114, 503, 540, 869
GsuI	CTGGAG	1 cut(s)	724
HaeIII	GGCC	1 cut(s)	425
Hin1II	CATG	5 cut(s)	76, 100, 211, 901, 1015
HincII	GTYRAC	2 cut(s)	61, 521
HindII	GTYRAC	2 cut(s)	61, 521
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	5 cut(s)	235, 590, 665, 783, 985
Hpy166II	GTNNAC	3 cut(s)	61, 521, 814
Hpy188I	TCNGA	4 cut(s)	189, 373, 727, 942
Hpy188III	TCNNGA	5 cut(s)	83, 476, 898, 920, 982
Hpy8I	GTNNAC	3 cut(s)	61, 521, 814
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	6 cut(s)	61, 281, 378, 415, 616, 964
HpyCH4III	ACNGT	3 cut(s)	138, 525, 818
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	5 cut(s)	133, 491, 542, 704, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 511, 539
HpyF3I	CTNAG	8 cut(s)	92, 188, 324, 515, 855, 939, 964, 994
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	5 cut(s)	76, 100, 211, 901, 1015
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	5 cut(s)	46, 444, 478, 686, 882
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	3 cut(s)	100, 526, 855
MaeI	CTAG	2 cut(s)	459, 584
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	788, 925
MalI	GATC	5 cut(s)	48, 446, 480, 688, 884
MboI	GATC	5 cut(s)	46, 444, 478, 686, 882
MboII	GAAGA	4 cut(s)	162, 405, 711, 714
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	7 cut(s)	127, 286, 486, 771, 849, 878, 953
MnlI	CCTC	8 cut(s)	14, 37, 322, 631, 748, 748, 812, 850
MseI	TTAA	3 cut(s)	158, 318, 557
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	1 cut(s)	849
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	3 cut(s)	97, 511, 539
NdeII	GATC	5 cut(s)	46, 444, 478, 686, 882
NlaIII	CATG	5 cut(s)	76, 100, 211, 901, 1015
NlaIV	GGNNCC	2 cut(s)	48, 549
NmuCI	GTSAC	1 cut(s)	788
NspI	RCATGY	1 cut(s)	100
PaeI	GCATGC	1 cut(s)	100
PagI	TCATGA	1 cut(s)	897
PfeI	GAWTC	5 cut(s)	235, 590, 665, 783, 985
PflMI	CCANNNNNTGG	1 cut(s)	231
PkrI	GCNGC	4 cut(s)	115, 504, 541, 870
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	48, 549
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	342, 602
RsaNI	GTAC	2 cut(s)	341, 601
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	158, 318, 557
SatI	GCNGC	4 cut(s)	114, 503, 540, 869
Sau3AI	GATC	5 cut(s)	46, 444, 478, 686, 882
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	614
SmlI	CTYRAG	3 cut(s)	387, 474, 635
SmoI	CTYRAG	3 cut(s)	387, 474, 635
SphI	GCATGC	1 cut(s)	100
Sse9I	AATT	7 cut(s)	127, 286, 486, 771, 849, 878, 953
SsiI	CCGC	1 cut(s)	502
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	2 cut(s)	459, 584
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	550
TaaI	ACNGT	3 cut(s)	138, 525, 818
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	4 cut(s)	14, 84, 242, 1002
TasI	AATT	7 cut(s)	127, 286, 486, 771, 849, 878, 953
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	1 cut(s)	505
TfiI	GAWTC	5 cut(s)	235, 590, 665, 783, 985
Tru1I	TTAA	3 cut(s)	158, 318, 557
Tru9I	TTAA	3 cut(s)	158, 318, 557
TscAI	CASTG	7 cut(s)	71, 149, 748, 768, 821, 898, 972
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	3 cut(s)	113, 539, 868
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	9 cut(s)	89, 224, 279, 384, 405, 517, 738, 836, 1000
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	7 cut(s)	71, 149, 748, 768, 821, 898, 972
Van91I	CCANNNNNTGG	1 cut(s)	231
XapI	RAATTY	2 cut(s)	127, 953
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	2 cut(s)	459, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.