Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

21086340 .. 21087774

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGACGTATCATCAGCGAAATGGTTTTCGGATTTGGGAATGGATGATTACAACTTCATTCATGAAGGGTTTACAGCACAGGACATAGCAACTGCCCTTGGGGAAAATTTCAAACAATCCTTCTCCAATGAGAGTTATTCCTCTTACCCAACTTTGACTACCCAAAAATCCCCCAACACCACGTTAAGTGGTGGTTCATCTATCAATGAGACTAATTCTCAGACAAGCTTTGAGAGACCAGCCAAACAGGTCAAGACCAACAGCTGGAACTCTGCCATTACAGAACATGTTTCACCAAAGCCTTCTTGCAATTCTTCATCCTCCCACATTCTTTCTTTCGAGAACACGAATTTGAATTCTTCACCACCTTCCAAGCCTCATCAACAGTTCTCTAATGGTTTTGACACTACCCTAAGGCCAAAGGATGAGGCACCATCCGAAATATGTATGCAGTTTGAGAACCAAGGCTATGGGACTAATAAGAGGCCTTACTCAATGACTAGAACTCCTTCTCATGCTCAAGACCACATAATGGCTGAGAGGAAGAGAAGAGAAAAGCTCAGTCAGAGATTCATTGCTCTTTCCGCCATTGTTCCTGGACTAAAAAAGATGGACAAAGCTTCTGTTCTTGGAGATGCAATCAAGTATGTGAAACAGCTCCAAGAAAGTGTCAAAGTTCTTGAGGAACAAACCAAGAAGAGAACCGTGGAATCCGTGGTGTTTGTGAAGAAGTCTCAGCTGGTCTCTTCTGATGATGACACTTCTTCATGCGATGAGAACTTTGATGGTCGCAGCTCTGATGAATCGCTCCCGCAAATTGAAGCAAGAGTTTCAGAGAAGGATGTATTGATTCGAATTCACTGCGAGAACCAGAAAGGATATGTGGTGAAAATTCTAAGCGAAATAGAAAAGCTTCAACTATCTGTGGTTAATAGCAGTGTCTTGCCATTTGGAAAGTCCACTCTAGACATAACCATTATTGCTCAGATGGATGATGAATGCAACATGACGGTAACGGATCTTGCCAAAAGCTTGAGAGTGGCTCTATTGAAGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

353

Amino Acids

39.37

Weight (kDa)

6.03

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	176 - 221	1.4e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	180 - 226	5.1e-06	Transcription factor SAC51 bHLH domain
bHLH-TF_ACT-like_plant	PF22754	277 - 333	3.7e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AccB7I	CCANNNNNTGG	2 cut(s)	264, 532
AciI	CCGC	2 cut(s)	585, 812
AclWI	GGATC	1 cut(s)	1026
AcsI	RAATTY	5 cut(s)	106, 349, 355, 855, 891
AfiI	CCNNNNNNNGG	2 cut(s)	264, 532
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	112, 355, 821, 917, 1051
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	9 cut(s)	228, 264, 559, 620, 658, 739, 795, 913, 1032
AluI	AGCT	9 cut(s)	228, 264, 559, 620, 658, 739, 795, 913, 1032
Alw26I	GTCTC	4 cut(s)	203, 229, 738, 748
AlwI	GGATC	1 cut(s)	1026
AoxI	GGCC	2 cut(s)	416, 485
ApeKI	GCWGC	1 cut(s)	792
ApoI	RAATTY	5 cut(s)	106, 349, 355, 855, 891
Asp700I	GAANNNNTTC	2 cut(s)	508, 912
AsuHPI	GGTGA	3 cut(s)	285, 354, 898
AsuII	TTCGAA	1 cut(s)	853
AxyI	CCTNAGG	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	804
BccI	CCATC	4 cut(s)	442, 604, 779, 982
BcgI	CGANNNNNNTGC	2 cut(s)	843, 877
BciT130I	CCWGG	1 cut(s)	597
BcoDI	GTCTC	4 cut(s)	203, 229, 738, 748
BfaI	CTAG	2 cut(s)	501, 965
BisI	GCNGC	1 cut(s)	793
BlsI	GCNGC	1 cut(s)	794
Bme1390I	CCNGG	1 cut(s)	597
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	1 cut(s)	625
BplI	GAGNNNNNCTC	4 cut(s)	543, 575, 1027, 1059
Bpu14I	TTCGAA	1 cut(s)	853
BpuEI	CTTGAG	3 cut(s)	504, 701, 1054
BsaI	GGTCTC	2 cut(s)	229, 748
BsaJI	CCNNGG	4 cut(s)	97, 463, 705, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 532
Bse21I	CCTNAGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	4 cut(s)	97, 463, 705, 714
BseGI	GGATG	6 cut(s)	49, 317, 430, 434, 847, 997
BseLI	CCNNNNNNNGG	2 cut(s)	264, 532
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	5 cut(s)	233, 528, 574, 749, 998
BseXI	GCAGC	1 cut(s)	804
BshFI	GGCC	2 cut(s)	418, 487
BshNI	GGYRCC	1 cut(s)	430
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	2 cut(s)	264, 532
BsmAI	GTCTC	4 cut(s)	203, 229, 738, 748
BsmFI	GGGAC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	1004
BsnI	GGCC	2 cut(s)	418, 487
Bso31I	GGTCTC	2 cut(s)	229, 748
Bsp119I	TTCGAA	1 cut(s)	853
Bsp143I	GATC	1 cut(s)	1018
BspACI	CCGC	2 cut(s)	585, 812
BspANI	GGCC	2 cut(s)	418, 487
BspCNI	CTCAG	5 cut(s)	232, 529, 573, 748, 997
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	1026
BspT104I	TTCGAA	1 cut(s)	853
BspT107I	GGYRCC	1 cut(s)	430
BspTNI	GGTCTC	2 cut(s)	229, 748
BsrDI	GCAATG	1 cut(s)	573
BssECI	CCNNGG	4 cut(s)	97, 463, 705, 714
BssMI	GATC	1 cut(s)	1018
BssT1I	CCWWGG	2 cut(s)	97, 463
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	387, 706, 1012
Bst6I	CTCTTC	4 cut(s)	539, 544, 692, 751
BstBI	TTCGAA	1 cut(s)	853
BstDEI	CTNAG	7 cut(s)	219, 413, 537, 560, 735, 896, 984
BstDSI	CCRYGG	2 cut(s)	705, 714
BstF5I	GGATG	6 cut(s)	49, 317, 430, 434, 847, 997
BstKTI	GATC	1 cut(s)	1021
BstMAI	GTCTC	4 cut(s)	203, 229, 738, 748
BstMBI	GATC	1 cut(s)	1018
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	804
BstX2I	RGATCY	1 cut(s)	1018
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	1018
Bsu36I	CCTNAGG	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	418, 487
BtgI	CCRYGG	2 cut(s)	705, 714
BtgZI	GCGATG	1 cut(s)	786
BtsCI	GGATG	6 cut(s)	49, 317, 430, 434, 847, 997
BtsI	GCAGTG	2 cut(s)	859, 943
BtsIMutI	CAGTG	2 cut(s)	859, 943
CciI	TCATGA	1 cut(s)	61
CviAII	CATG	6 cut(s)	62, 287, 515, 768, 1006, 1057
DdeI	CTNAG	7 cut(s)	219, 413, 537, 560, 735, 896, 984
DpnI	GATC	1 cut(s)	1020
DpnII	GATC	1 cut(s)	1018
Eam1104I	CTCTTC	4 cut(s)	539, 544, 692, 751
EarI	CTCTTC	4 cut(s)	539, 544, 692, 751
EciI	GGCGGA	1 cut(s)	574
Eco130I	CCWWGG	2 cut(s)	97, 463
Eco147I	AGGCCT	1 cut(s)	487
Eco31I	GGTCTC	2 cut(s)	229, 748
Eco81I	CCTNAGG	1 cut(s)	413
EcoRI	GAATTC	2 cut(s)	355, 855
EcoRII	CCWGG	1 cut(s)	595
EcoT14I	CCWWGG	2 cut(s)	97, 463
ErhI	CCWWGG	2 cut(s)	97, 463
FaeI	CATG	6 cut(s)	65, 290, 518, 771, 1009, 1060
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	6 cut(s)	61, 286, 514, 767, 1005, 1056
FauI	CCCGC	1 cut(s)	819
Fnu4HI	GCNGC	1 cut(s)	793
FokI	GGATG	6 cut(s)	56, 304, 421, 437, 854, 1004
Fsp4HI	GCNGC	1 cut(s)	793
FspBI	CTAG	2 cut(s)	501, 965
GluI	GCNGC	1 cut(s)	793
HaeIII	GGCC	2 cut(s)	418, 487
Hin1II	CATG	6 cut(s)	65, 290, 518, 771, 1009, 1060
HindIII	AAGCTT	4 cut(s)	226, 618, 911, 1030
HinfI	GANTC	4 cut(s)	570, 710, 803, 850
HphI	GGTGA	3 cut(s)	285, 354, 898
Hpy166II	GTNNAC	2 cut(s)	72, 960
Hpy188I	TCNGA	8 cut(s)	31, 222, 439, 567, 751, 799, 835, 987
Hpy188III	TCNNGA	6 cut(s)	62, 253, 340, 521, 680, 965
Hpy8I	GTNNAC	2 cut(s)	72, 960
HpyAV	CCTTC	6 cut(s)	59, 130, 312, 378, 519, 832
HpyCH4III	ACNGT	3 cut(s)	387, 706, 1012
HpyCH4IV	ACGT	2 cut(s)	6, 182
HpyCH4V	TGCA	4 cut(s)	309, 451, 638, 1002
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	7 cut(s)	219, 413, 537, 560, 735, 896, 984
HpySE526I	ACGT	2 cut(s)	6, 182
Hsp92II	CATG	6 cut(s)	65, 290, 518, 771, 1009, 1060
Kzo9I	GATC	1 cut(s)	1018
LmnI	GCTCC	2 cut(s)	663, 813
LpnPI	CCDG	8 cut(s)	65, 233, 250, 252, 582, 609, 725, 884
Lsp1109I	GCAGC	1 cut(s)	804
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	2 cut(s)	501, 965
MaeII	ACGT	2 cut(s)	6, 182
MaeIII	GTNAC	1 cut(s)	1012
MalI	GATC	1 cut(s)	1020
MboI	GATC	1 cut(s)	1018
MboII	GAAGA	8 cut(s)	306, 351, 556, 561, 709, 738, 739, 756
MflI	RGATCY	1 cut(s)	1018
MluCI	AATT	8 cut(s)	106, 214, 310, 349, 355, 816, 855, 891
MnlI	CCTC	7 cut(s)	151, 331, 387, 421, 477, 534, 676
MroXI	GAANNNNTTC	2 cut(s)	508, 912
MseI	TTAA	2 cut(s)	185, 930
MspA1I	CMGCKG	2 cut(s)	264, 739
MspR9I	CCNGG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	1004
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	584
NdeII	GATC	1 cut(s)	1018
NlaIII	CATG	6 cut(s)	65, 290, 518, 771, 1009, 1060
NlaIV	GGNNCC	1 cut(s)	432
NspI	RCATGY	1 cut(s)	290
NspV	TTCGAA	1 cut(s)	853
PagI	TCATGA	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	487
PciI	ACATGT	1 cut(s)	286
PctI	GAATGC	1 cut(s)	1004
PdmI	GAANNNNTTC	2 cut(s)	508, 912
PfeI	GAWTC	4 cut(s)	570, 710, 803, 850
PflMI	CCANNNNNTGG	2 cut(s)	264, 532
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	1 cut(s)	794
PscI	ACATGT	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	1018
PvuII	CAGCTG	2 cut(s)	264, 739
SaqAI	TTAA	2 cut(s)	185, 930
SatI	GCNGC	1 cut(s)	793
Sau3AI	GATC	1 cut(s)	1018
ScrFI	CCNGG	1 cut(s)	597
SfaNI	GCATC	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	853
SmlI	CTYRAG	3 cut(s)	519, 680, 1033
SmoI	CTYRAG	3 cut(s)	519, 680, 1033
Sse9I	AATT	8 cut(s)	106, 214, 310, 349, 355, 816, 855, 891
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	2 cut(s)	585, 812
SspMI	CTAG	2 cut(s)	501, 965
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	595
StyI	CCWWGG	2 cut(s)	97, 463
TaaI	ACNGT	3 cut(s)	387, 706, 1012
TaiI	ACGT	2 cut(s)	9, 185
TaqI	TCGA	2 cut(s)	339, 853
TasI	AATT	8 cut(s)	106, 214, 310, 349, 355, 816, 855, 891
TfiI	GAWTC	4 cut(s)	570, 710, 803, 850
Tru1I	TTAA	2 cut(s)	185, 930
Tru9I	TTAA	2 cut(s)	185, 930
TscAI	CASTG	2 cut(s)	866, 943
TseI	GCWGC	1 cut(s)	792
TspGWI	ACGGA	2 cut(s)	703, 1031
TspRI	CASTG	2 cut(s)	866, 943
Van91I	CCANNNNNTGG	2 cut(s)	264, 532
XapI	RAATTY	5 cut(s)	106, 349, 355, 855, 891
XbaI	TCTAGA	1 cut(s)	964
XceI	RCATGY	1 cut(s)	290
XmnI	GAANNNNTTC	2 cut(s)	508, 912
XspI	CTAG	2 cut(s)	501, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.