Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

23148882 .. 23151580

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1113000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGATTTCATCAAGAGGAGGATTATCTGAGCTGGGAATGGAGGATCCCTTCTTCATCAACCAGTGGCAGTACATGAACTCTTTGGATGAGCTCGGTATGCTCCCATTAGCAGCTGCATTTGGAGAGAATTTACAACACTCTCAGTTCCACCCAATTTTCAACCTCAAAACTCCAATCGATAATTCTCATACCGCCATTGACAGACCAACGAAACAGCTCAAAACTGATGGATGGACTTCATGCAAAACTGATCATCTTGTATCAAATCCACAAGTTGCTTCCTTGCCTCCAAACATTCTTTCGTTCGTCAATTCTCATCATGCAAACCAAATGCCGGTGCTTAAGCCTAAGGGGGAGGGAGCAGCAGTGTGTTCAAAGAGCACCAACACTCTCCCTTCTGATATATTGCTTTCTCAAGGTTCATTTGGAAACCGAAATTATTCATCAAATGGGATCAGCACAACCACTCGGCTTTCTCAGACCCAAGATCACATTATCGCCGAAAGGAAGCGCAGAGAGAAGCTCAGCCAACGGTTCATAGCTTTATCTGCAATCGTTCCTGGTCTAAAGAAGATGGACAAGGCTTCTGTTCTGGGAGATTCAATTAAGTACATCAAACAACTGCAGGACAAGGTAAAGACGCTTGAGGAACAGACGAGAAACAAAAACATGGAATCGGTCGTGTTTGTGAAGAAAACACAGCTCTTTGCCAACAGCGACAGTTCTTGCTCTGACGAAAACAGCTCCACAGGCCCGTTTGACACGACACTGCCTGAAATTGAAGCAAGGTTCTGTGACAACAATGTCTTGATAAGAATCCACTGTGAAAAAAGAAAAGGAATTGTGGAAAAAACAATAGCAGAGGTTGAGAAGCTCCAATTGAAATTCATCAATAGTAGTGTGATGACATTCGGGAGCTGTGCTCTTGATGTTACCATTATTGCTCAGATGGAAGCGGAATTCAGCCTCTCGGTGAAGGATCTCGTCAAGAATCTACGCGCAGCTTTTGAGCTGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

342

Amino Acids

37.97

Weight (kDa)

7.64

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	164 - 210	1e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	806
AccII	CGCG	1 cut(s)	1002
AciI	CCGC	2 cut(s)	195, 959
AclWI	GGATC	4 cut(s)	41, 54, 464, 990
AcsI	RAATTY	3 cut(s)	130, 887, 962
AfaI	GTAC	2 cut(s)	74, 614
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	5 cut(s)	163, 378, 606, 785, 886
AjnI	CCWGG	1 cut(s)	562
AjuI	GAANNNNNNNTTGG	4 cut(s)	169, 201, 286, 318
Alw21I	GWGCWC	3 cut(s)	96, 386, 928
AlwI	GGATC	4 cut(s)	41, 54, 464, 990
AoxI	GGCC	1 cut(s)	754
ApeKI	GCWGC	4 cut(s)	113, 116, 365, 1004
ApoI	RAATTY	3 cut(s)	130, 887, 962
Asp700I	GAANNNNTTC	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	516, 1004
AspS9I	GGNCC	1 cut(s)	755
AsuHPI	GGTGA	1 cut(s)	988
AxyI	CCTNAGG	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	3 cut(s)	96, 386, 928
BbvI	GCAGC	4 cut(s)	103, 125, 377, 1016
BccI	CCATC	4 cut(s)	224, 228, 571, 946
BciT130I	CCWGG	1 cut(s)	564
BclI	TGATCA	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	626
BfrI	CTTAAG	1 cut(s)	344
BisI	GCNGC	4 cut(s)	114, 117, 366, 1005
BlpI	GCTNAGC	1 cut(s)	527
BlsI	GCNGC	4 cut(s)	115, 118, 367, 1006
Bme1390I	CCNGG	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	755
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	564
BplI	GAGNNNNNCTC	4 cut(s)	510, 542, 910, 942
Bpu1102I	GCTNAGC	1 cut(s)	527
BpuEI	CTTGAG	2 cut(s)	402, 668
Bsa29I	ATCGAT	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	818
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	818
BseBI	CCWGG	1 cut(s)	564
BseCI	ATCGAT	1 cut(s)	180
BseGI	GGATG	2 cut(s)	94, 239
BseJI	GATNNNNATC	1 cut(s)	818
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	5 cut(s)	21, 158, 494, 541, 962
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	103, 125, 377, 1016
BseYI	CCCAGC	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	1002
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	1 cut(s)	756
BshVI	ATCGAT	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	684
BsiHKAI	GWGCWC	3 cut(s)	96, 386, 928
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	337
BsnI	GGCC	1 cut(s)	756
Bsp1286I	GDGCHC	3 cut(s)	96, 386, 928
Bsp143I	GATC	5 cut(s)	46, 253, 456, 490, 982
Bsp1720I	GCTNAGC	1 cut(s)	527
BspACI	CCGC	2 cut(s)	195, 959
BspANI	GGCC	1 cut(s)	756
BspCNI	CTCAG	5 cut(s)	22, 157, 493, 540, 961
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	1002
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	630
BspPI	GGATC	4 cut(s)	41, 54, 464, 990
BspTI	CTTAAG	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	337
BssMI	GATC	5 cut(s)	46, 253, 456, 490, 982
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	3 cut(s)	537, 725, 827
BstAFI	CTTAAG	1 cut(s)	344
BstDEI	CTNAG	6 cut(s)	30, 144, 351, 480, 527, 948
BstF5I	GGATG	2 cut(s)	94, 239
BstFNI	CGCG	1 cut(s)	1002
BstHHI	GCGC	2 cut(s)	516, 1004
BstKTI	GATC	5 cut(s)	49, 256, 459, 493, 985
BstMBI	GATC	5 cut(s)	46, 253, 456, 490, 982
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 551, 753
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	1 cut(s)	626
BstUI	CGCG	1 cut(s)	1002
BstV1I	GCAGC	4 cut(s)	103, 125, 377, 1016
BstX2I	RGATCY	2 cut(s)	46, 982
BstYI	RGATCY	2 cut(s)	46, 982
Bsu15I	ATCGAT	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	756
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	94, 239
BtsI	GCAGTG	2 cut(s)	375, 770
BtsIMutI	CAGTG	4 cut(s)	71, 375, 770, 823
CfoI	GCGC	2 cut(s)	516, 1004
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	755
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	652
Csp6I	GTAC	2 cut(s)	73, 613
CviAII	CATG	5 cut(s)	76, 243, 323, 673, 1021
CviQI	GTAC	2 cut(s)	73, 613
DdeI	CTNAG	6 cut(s)	30, 144, 351, 480, 527, 948
DpnI	GATC	5 cut(s)	48, 255, 458, 492, 984
DpnII	GATC	5 cut(s)	46, 253, 456, 490, 982
DrdI	GACNNNNNNGTC	1 cut(s)	806
DseDI	GACNNNNNNGTC	1 cut(s)	806
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	962
EcoRII	CCWGG	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	5 cut(s)	79, 246, 326, 676, 1024
FaiI	YATR	9 cut(s)	77, 101, 192, 244, 324, 407, 542, 674, 1022
FatI	CATG	5 cut(s)	75, 242, 322, 672, 1020
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	114, 117, 366, 1005
FokI	GGATG	2 cut(s)	101, 246
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	114, 117, 366, 1005
GlaI	GCGC	2 cut(s)	515, 1003
GluI	GCNGC	4 cut(s)	114, 117, 366, 1005
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	756
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	652
HhaI	GCGC	2 cut(s)	516, 1004
Hin1II	CATG	5 cut(s)	79, 246, 326, 676, 1024
Hin6I	GCGC	2 cut(s)	514, 1002
HinP1I	GCGC	2 cut(s)	514, 1002
HinfI	GANTC	4 cut(s)	602, 677, 819, 994
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	988
Hpy188I	TCNGA	5 cut(s)	31, 403, 483, 736, 951
Hpy188III	TCNNGA	5 cut(s)	15, 811, 916, 929, 991
HpyAV	CCTTC	3 cut(s)	61, 408, 973
HpyCH4III	ACNGT	3 cut(s)	537, 725, 827
HpyCH4V	TGCA	5 cut(s)	119, 246, 326, 554, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 551, 753
HpyF3I	CTNAG	6 cut(s)	30, 144, 351, 480, 527, 948
Hsp92II	CATG	5 cut(s)	79, 246, 326, 676, 1024
HspAI	GCGC	2 cut(s)	514, 1002
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	46, 253, 456, 490, 982
LmnI	GCTCC	5 cut(s)	108, 362, 752, 882, 918
LpnPI	CCDG	9 cut(s)	20, 77, 351, 549, 576, 581, 614, 738, 789
Lsp1109I	GCAGC	4 cut(s)	103, 125, 377, 1016
MaeIII	GTNAC	2 cut(s)	797, 934
MalI	GATC	5 cut(s)	48, 255, 458, 492, 984
MboI	GATC	5 cut(s)	46, 253, 456, 490, 982
MboII	GAAGA	3 cut(s)	46, 586, 706
MfeI	CAATTG	1 cut(s)	881
MflI	RGATCY	2 cut(s)	46, 982
MhlI	GDGCHC	3 cut(s)	96, 386, 928
MnlI	CCTC	9 cut(s)	11, 14, 37, 176, 300, 352, 643, 859, 980
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	2 cut(s)	345, 609
MspA1I	CMGCKG	1 cut(s)	116
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	564
MunI	CAATTG	1 cut(s)	881
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	3 cut(s)	100, 551, 753
NdeII	GATC	5 cut(s)	46, 253, 456, 490, 982
NlaIII	CATG	5 cut(s)	79, 246, 326, 676, 1024
NlaIV	GGNNCC	1 cut(s)	48
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	797
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	4 cut(s)	602, 677, 819, 994
PkrI	GCNGC	4 cut(s)	115, 118, 367, 1006
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	562
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	755
PstI	CTGCAG	1 cut(s)	630
PsuI	RGATCY	2 cut(s)	46, 982
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	74, 614
RsaNI	GTAC	2 cut(s)	73, 613
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	345, 609
SatI	GCNGC	4 cut(s)	114, 117, 366, 1005
Sau3AI	GATC	5 cut(s)	46, 253, 456, 490, 982
Sau96I	GGNCC	1 cut(s)	755
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	3 cut(s)	96, 386, 928
SfcI	CTRYAG	1 cut(s)	626
SmlI	CTYRAG	3 cut(s)	344, 417, 647
SmoI	CTYRAG	3 cut(s)	344, 417, 647
SsiI	CCGC	2 cut(s)	195, 959
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	562
TaaI	ACNGT	3 cut(s)	537, 725, 827
TaqI	TCGA	1 cut(s)	180
TaqII	GACCGA	1 cut(s)	670
TatI	WGTACW	2 cut(s)	72, 612
TfiI	GAWTC	4 cut(s)	602, 677, 819, 994
Tru1I	TTAA	2 cut(s)	345, 609
Tru9I	TTAA	2 cut(s)	345, 609
TscAI	CASTG	4 cut(s)	71, 375, 777, 830
TseFI	GTSAC	1 cut(s)	797
TseI	GCWGC	4 cut(s)	113, 116, 365, 1004
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	8 cut(s)	46, 92, 231, 414, 435, 529, 880, 1009
TspRI	CASTG	4 cut(s)	71, 375, 777, 830
Vha464I	CTTAAG	1 cut(s)	344
XapI	RAATTY	3 cut(s)	130, 887, 962
XmnI	GAANNNNTTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.