Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Forward (+)

71547397 .. 71549785

Gene Structure 2389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGATTTCACCTCACGTCAACGACTATGGAATGGATGATTACAACTTCATTCACGAAGGCTTTGCAGCACAGGACATAGCAACTGCCCTTGGGGGAAATTTCAAACAATCTTTCTCCAATGAGAGTTATTCCTCTTACCCAACTTTGACCACCCAAAAATCCCCCAGTACCACATTAAGTGGTGGTTCATCTATCAATGAGACTAATTCTCAGACGAGCTTTGAGAGACCAGCCAAACTGGTCGAGACCAACAGCTGGAACTCTGCCATTACAGAACATGTTTCACCAAAGCCTTCTTGCAATTCTTATTCCTCCCACATTCTTTCTTTCGAGAACACGAATTTGAATTTTTCAACACCTTCCAAGCCTCATCAACAGTTCTCTAATGCTTTTGACACTACCCTGAAGCCAAAGGATGAGGCACCATCCGAAACATGTATGCAGTTTGAGAACCAAGGCTATGGGACTAATAAGAGGCCTTACTCAATGACTAGAACTCCTTCTCATGCTCAAGACCACATAATGGCTGAGAGGAAGAGAAGAGAAAAGCTCAGTCAGAGATTCATTGCTCTTTCTGCCATTGTTCCTGGACTAAAAAAGATGGACAAAGCTTCTGTTCTTGGAGATGCAATCAAGTATGTGAAACAGCTCCAAGAAAGTGTCAAAGTTCTTGAGGAACAAACCAAGAAGAGAACCGTGGAATCCGTGGTGTTTGTGAAGAAGTCTCAGCTGGTCTCTTCTGATGATGACACTTCTTCATGCGATGAGAACTTTGATGGTCGCAGCTCTGATGAATCGCTCCCGCAAATTGAAGCAAGAGTTTCAGAGAAGGATGTATTGATTCGAATTCACTGCGAGAACCAGAAAGGATATGTGGTGAAAATTCTAAGCGAAATAGAAAAGCTTCAACTATCTGTGGTTAATAGCAGTGTCTTGCCATTTGGAAAGTCCACTCTAGACATAACCATTATTGCTCTGATGGATGATGAATGCAACATGACGGTGACGGATCTTGCCAAAAGCTTGAGAGTGGCTCTATTGAAGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

350

Amino Acids

39.01

Weight (kDa)

5.96

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	173 - 218	1.3e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	177 - 223	5e-06	Transcription factor SAC51 bHLH domain
bHLH-TF_ACT-like_plant	PF22754	274 - 311	8.3e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccB7I	CCANNNNNTGG	2 cut(s)	255, 523
AciI	CCGC	1 cut(s)	803
AclWI	GGATC	1 cut(s)	1017
AcsI	RAATTY	5 cut(s)	97, 340, 346, 846, 882
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	255, 523
AflIII	ACRYGT	2 cut(s)	277, 434
AgsI	TTSAA	6 cut(s)	103, 346, 354, 812, 908, 1042
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	9 cut(s)	219, 255, 550, 611, 649, 730, 786, 904, 1023
AluI	AGCT	9 cut(s)	219, 255, 550, 611, 649, 730, 786, 904, 1023
Alw26I	GTCTC	5 cut(s)	194, 220, 239, 729, 739
AlwI	GGATC	1 cut(s)	1017
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	2 cut(s)	65, 783
ApoI	RAATTY	5 cut(s)	97, 340, 346, 846, 882
Asp700I	GAANNNNTTC	2 cut(s)	499, 903
AsuHPI	GGTGA	3 cut(s)	276, 889, 1015
AsuII	TTCGAA	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	77, 795
BccI	CCATC	4 cut(s)	433, 595, 770, 973
BcgI	CGANNNNNNTGC	4 cut(s)	44, 78, 834, 868
BciT130I	CCWGG	1 cut(s)	588
BcoDI	GTCTC	5 cut(s)	194, 220, 239, 729, 739
BfaI	CTAG	2 cut(s)	492, 956
BisI	GCNGC	2 cut(s)	66, 784
BlsI	GCNGC	2 cut(s)	67, 785
Bme1390I	CCNGG	1 cut(s)	588
BmgBI	CACGTC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	588
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	616
BmuI	ACTGGG	1 cut(s)	159
BplI	GAGNNNNNCTC	4 cut(s)	534, 566, 1018, 1050
Bpu14I	TTCGAA	1 cut(s)	844
BpuEI	CTTGAG	3 cut(s)	495, 692, 1045
BsaI	GGTCTC	3 cut(s)	220, 239, 739
BsaJI	CCNNGG	4 cut(s)	88, 454, 696, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 523
Bse1I	ACTGG	2 cut(s)	165, 243
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	4 cut(s)	88, 454, 696, 705
BseGI	GGATG	5 cut(s)	40, 421, 425, 838, 988
BseLI	CCNNNNNNNGG	2 cut(s)	255, 523
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	4 cut(s)	224, 519, 565, 740
BseNI	ACTGG	2 cut(s)	165, 243
BseXI	GCAGC	2 cut(s)	77, 795
BshFI	GGCC	1 cut(s)	478
BshNI	GGYRCC	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	255, 523
BsmAI	GTCTC	5 cut(s)	194, 220, 239, 729, 739
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	1 cut(s)	478
Bso31I	GGTCTC	3 cut(s)	220, 239, 739
Bsp119I	TTCGAA	1 cut(s)	844
Bsp143I	GATC	1 cut(s)	1009
BspACI	CCGC	1 cut(s)	803
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	4 cut(s)	223, 520, 564, 739
BspLI	GGNNCC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	1017
BspT104I	TTCGAA	1 cut(s)	844
BspT107I	GGYRCC	1 cut(s)	421
BspTNI	GGTCTC	3 cut(s)	220, 239, 739
BsrDI	GCAATG	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	165, 243
BssECI	CCNNGG	4 cut(s)	88, 454, 696, 705
BssMI	GATC	1 cut(s)	1009
BssT1I	CCWWGG	2 cut(s)	88, 454
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	378, 697, 1003
Bst6I	CTCTTC	4 cut(s)	530, 535, 683, 742
BstBI	TTCGAA	1 cut(s)	844
BstDEI	CTNAG	5 cut(s)	210, 528, 551, 726, 887
BstDSI	CCRYGG	2 cut(s)	696, 705
BstF5I	GGATG	5 cut(s)	40, 421, 425, 838, 988
BstKTI	GATC	1 cut(s)	1012
BstMAI	GTCTC	5 cut(s)	194, 220, 239, 729, 739
BstMBI	GATC	1 cut(s)	1009
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	2 cut(s)	281, 438
BstSCI	CCNGG	1 cut(s)	586
BstV1I	GCAGC	2 cut(s)	77, 795
BstX2I	RGATCY	1 cut(s)	1009
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	1009
BsuRI	GGCC	1 cut(s)	478
BtgI	CCRYGG	2 cut(s)	696, 705
BtgZI	GCGATG	1 cut(s)	777
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	5 cut(s)	40, 421, 425, 838, 988
BtsI	GCAGTG	2 cut(s)	850, 934
BtsIMutI	CAGTG	2 cut(s)	850, 934
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	6 cut(s)	278, 435, 506, 759, 997, 1048
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	5 cut(s)	210, 528, 551, 726, 887
DpnI	GATC	1 cut(s)	1011
DpnII	GATC	1 cut(s)	1009
Eam1104I	CTCTTC	4 cut(s)	530, 535, 683, 742
EarI	CTCTTC	4 cut(s)	530, 535, 683, 742
Eco130I	CCWWGG	2 cut(s)	88, 454
Eco147I	AGGCCT	1 cut(s)	478
Eco31I	GGTCTC	3 cut(s)	220, 239, 739
Eco57I	CTGAAG	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	586
EcoT14I	CCWWGG	2 cut(s)	88, 454
ErhI	CCWWGG	2 cut(s)	88, 454
FaeI	CATG	6 cut(s)	281, 438, 509, 762, 1000, 1051
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	6 cut(s)	277, 434, 505, 758, 996, 1047
FauI	CCCGC	1 cut(s)	810
Fnu4HI	GCNGC	2 cut(s)	66, 784
FokI	GGATG	5 cut(s)	47, 412, 428, 845, 995
Fsp4HI	GCNGC	2 cut(s)	66, 784
FspBI	CTAG	2 cut(s)	492, 956
GluI	GCNGC	2 cut(s)	66, 784
HaeIII	GGCC	1 cut(s)	478
Hin1II	CATG	6 cut(s)	281, 438, 509, 762, 1000, 1051
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	3 cut(s)	609, 902, 1021
HinfI	GANTC	4 cut(s)	561, 701, 794, 841
HphI	GGTGA	3 cut(s)	276, 889, 1015
Hpy166II	GTNNAC	2 cut(s)	19, 951
Hpy188I	TCNGA	7 cut(s)	213, 430, 558, 742, 790, 826, 978
Hpy188III	TCNNGA	6 cut(s)	53, 244, 331, 512, 671, 956
Hpy8I	GTNNAC	2 cut(s)	19, 951
HpyAV	CCTTC	5 cut(s)	50, 303, 369, 510, 823
HpyCH4III	ACNGT	3 cut(s)	378, 697, 1003
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	5 cut(s)	65, 300, 442, 629, 993
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	5 cut(s)	210, 528, 551, 726, 887
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	6 cut(s)	281, 438, 509, 762, 1000, 1051
Kzo9I	GATC	1 cut(s)	1009
LmnI	GCTCC	2 cut(s)	654, 804
Lsp1109I	GCAGC	2 cut(s)	77, 795
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	2 cut(s)	492, 956
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	1003
MalI	GATC	1 cut(s)	1011
MboI	GATC	1 cut(s)	1009
MboII	GAAGA	6 cut(s)	547, 552, 700, 729, 730, 747
MflI	RGATCY	1 cut(s)	1009
MluCI	AATT	8 cut(s)	97, 205, 301, 340, 346, 807, 846, 882
MnlI	CCTC	8 cut(s)	21, 142, 322, 378, 412, 468, 525, 667
MroXI	GAANNNNTTC	2 cut(s)	499, 903
MseI	TTAA	2 cut(s)	176, 921
MslI	CAYNNNNRTG	1 cut(s)	1001
MspA1I	CMGCKG	2 cut(s)	255, 730
MspR9I	CCNGG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	995
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	575
NdeII	GATC	1 cut(s)	1009
NlaIII	CATG	6 cut(s)	281, 438, 509, 762, 1000, 1051
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	1003
NspI	RCATGY	2 cut(s)	281, 438
NspV	TTCGAA	1 cut(s)	844
PceI	AGGCCT	1 cut(s)	478
PciI	ACATGT	2 cut(s)	277, 434
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	2 cut(s)	499, 903
PfeI	GAWTC	4 cut(s)	561, 701, 794, 841
PflMI	CCANNNNNTGG	2 cut(s)	255, 523
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	2 cut(s)	67, 785
PscI	ACATGT	2 cut(s)	277, 434
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	1009
PvuII	CAGCTG	2 cut(s)	255, 730
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	1001
SaqAI	TTAA	2 cut(s)	176, 921
SatI	GCNGC	2 cut(s)	66, 784
Sau3AI	GATC	1 cut(s)	1009
ScrFI	CCNGG	1 cut(s)	588
SfaNI	GCATC	1 cut(s)	616
SfuI	TTCGAA	1 cut(s)	844
SmiMI	CAYNNNNRTG	1 cut(s)	1001
SmlI	CTYRAG	3 cut(s)	510, 671, 1024
SmoI	CTYRAG	3 cut(s)	510, 671, 1024
Sse9I	AATT	8 cut(s)	97, 205, 301, 340, 346, 807, 846, 882
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	1 cut(s)	803
SspMI	CTAG	2 cut(s)	492, 956
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	586
StyI	CCWWGG	2 cut(s)	88, 454
TaaI	ACNGT	3 cut(s)	378, 697, 1003
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	243, 330, 844
TasI	AATT	8 cut(s)	97, 205, 301, 340, 346, 807, 846, 882
TfiI	GAWTC	4 cut(s)	561, 701, 794, 841
Tru1I	TTAA	2 cut(s)	176, 921
Tru9I	TTAA	2 cut(s)	176, 921
TscAI	CASTG	2 cut(s)	857, 934
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	2 cut(s)	65, 783
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	7 cut(s)	37, 177, 553, 747, 807, 1002, 1036
TspGWI	ACGGA	2 cut(s)	694, 1022
TspRI	CASTG	2 cut(s)	857, 934
Van91I	CCANNNNNTGG	2 cut(s)	255, 523
XapI	RAATTY	5 cut(s)	97, 340, 346, 846, 882
XbaI	TCTAGA	1 cut(s)	955
XceI	RCATGY	2 cut(s)	281, 438
XmnI	GAANNNNTTC	2 cut(s)	499, 903
XspI	CTAG	2 cut(s)	492, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.