Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

21724172 .. 21725571

Gene Structure 1400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG223900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGATGATTACAACTTCATTCATGAAGGGTTTACAGCACAGGACATAGCAACTGCCCTTGGGGAAAATTTCAAACAATCCTTCTCCAATGAGAGTTATTCCTCTTACCCAACTTTGACTACCCAAAAATCCCCCAACACCACATTAAGTGGTGGTTCATCTATCAATGAGACTAATTCTCAGACGAGCTTTGAGAGACCAGCCAAACTGATCAAGACCAACAGCTGGAACTCTGCCATTACAGAACATGTTTCACCAAAGCCTTCTTGCAATTCTTCATCCTCCCACATTCTTTCTTTCGAGAACACGAATTTGAATTCGTCACCACCTTCCAAGCCTCATCAACAGTTCTCTAATGGTTTTGACACTACCCTGAGGCCAAAGGATGAGGCACCATCTGAAATATGTATGCAGTTTGAGAACCAAGGCTATGGGACTAATAAGAGGCCTTACTCAATGACTAGAACTCCTTCTCATGCTCAAGACCACATAATGGCTGAGAGGAAGAGAAGAGAAAAGCTCAGTCAGAGATTCATTGCTCTTTCCGCCATTGTTCCTGGACTAAAAAAGATGGACAAAGCTTCTGTTCTTGGAGATGCAATCAAGTATGTGAAACAGCTCCAAGAAAGTGTCAAAGTTCTTGAGGAACAAACCAAGAAGAGAACCGTGGAATCCGTGGTTTTTGTGAAGAAGTCTCAGCTGGTCTCTTCTGATGATGACACTTCTTCATGCGATGAGAACTTTGATGGTCGCAGCTCTGATGAATCGCTCCCGCAAATTGAAGCAAGAGTTTCAGAGAAGGATGTATTGATTCGAATTCACTGCGAGAACCAGAAAGGATATGTGGTGAAAATTCTAAGCGAAATAGAAAAGCTTCAACTATCTGTGGTTAATAGCAGTGTCTTGCCATTTGGAAAGTCCACTCTAGACATAACCATTATTGCTCAGATGGATGATGAATGCAACATGACGGTAACGGATCTTGCCAAAAGCTTGAGAGTGGCTCTATTGAAGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

340

Amino Acids

37.94

Weight (kDa)

6.21

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	163 - 208	1.3e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	167 - 213	4.8e-06	Transcription factor SAC51 bHLH domain
bHLH-TF_ACT-like_plant	PF22754	264 - 320	3.5e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	391
AccB7I	CCANNNNNTGG	2 cut(s)	225, 493
AciI	CCGC	2 cut(s)	546, 773
AclWI	GGATC	1 cut(s)	987
AcsI	RAATTY	5 cut(s)	67, 310, 316, 816, 852
AfiI	CCNNNNNNNGG	2 cut(s)	225, 493
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	5 cut(s)	73, 316, 782, 878, 1012
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	9 cut(s)	189, 225, 520, 581, 619, 700, 756, 874, 993
AluI	AGCT	9 cut(s)	189, 225, 520, 581, 619, 700, 756, 874, 993
Alw26I	GTCTC	4 cut(s)	164, 190, 699, 709
AlwI	GGATC	1 cut(s)	987
AoxI	GGCC	2 cut(s)	377, 446
ApeKI	GCWGC	1 cut(s)	753
ApoI	RAATTY	5 cut(s)	67, 310, 316, 816, 852
Asp700I	GAANNNNTTC	2 cut(s)	469, 873
AsuHPI	GGTGA	3 cut(s)	246, 315, 859
AsuII	TTCGAA	1 cut(s)	814
AxyI	CCTNAGG	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	765
BccI	CCATC	4 cut(s)	403, 565, 740, 943
BcgI	CGANNNNNNTGC	2 cut(s)	804, 838
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	4 cut(s)	164, 190, 699, 709
BfaI	CTAG	2 cut(s)	462, 926
BisI	GCNGC	1 cut(s)	754
BlsI	GCNGC	1 cut(s)	755
Bme1390I	CCNGG	1 cut(s)	558
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	1 cut(s)	586
BplI	GAGNNNNNCTC	4 cut(s)	504, 536, 988, 1020
Bpu14I	TTCGAA	1 cut(s)	814
BpuEI	CTTGAG	3 cut(s)	465, 662, 1015
BsaI	GGTCTC	2 cut(s)	190, 709
BsaJI	CCNNGG	4 cut(s)	58, 424, 666, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 493
Bse21I	CCTNAGG	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	4 cut(s)	58, 424, 666, 675
BseGI	GGATG	5 cut(s)	10, 278, 391, 808, 958
BseLI	CCNNNNNNNGG	2 cut(s)	225, 493
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	6 cut(s)	194, 365, 489, 535, 710, 959
BseXI	GCAGC	1 cut(s)	765
BshFI	GGCC	2 cut(s)	379, 448
BshNI	GGYRCC	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	225, 493
BsmAI	GTCTC	4 cut(s)	164, 190, 699, 709
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	965
BsnI	GGCC	2 cut(s)	379, 448
Bso31I	GGTCTC	2 cut(s)	190, 709
Bsp119I	TTCGAA	1 cut(s)	814
Bsp143I	GATC	2 cut(s)	210, 979
BspACI	CCGC	2 cut(s)	546, 773
BspANI	GGCC	2 cut(s)	379, 448
BspCNI	CTCAG	6 cut(s)	193, 366, 490, 534, 709, 958
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	987
BspT104I	TTCGAA	1 cut(s)	814
BspT107I	GGYRCC	1 cut(s)	391
BspTNI	GGTCTC	2 cut(s)	190, 709
BsrDI	GCAATG	1 cut(s)	534
BssECI	CCNNGG	4 cut(s)	58, 424, 666, 675
BssMI	GATC	2 cut(s)	210, 979
BssT1I	CCWWGG	2 cut(s)	58, 424
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	348, 667, 973
Bst6I	CTCTTC	4 cut(s)	500, 505, 653, 712
BstBI	TTCGAA	1 cut(s)	814
BstDEI	CTNAG	7 cut(s)	180, 374, 498, 521, 696, 857, 945
BstDSI	CCRYGG	2 cut(s)	666, 675
BstF5I	GGATG	5 cut(s)	10, 278, 391, 808, 958
BstKTI	GATC	2 cut(s)	213, 982
BstMAI	GTCTC	4 cut(s)	164, 190, 699, 709
BstMBI	GATC	2 cut(s)	210, 979
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	556
BstV1I	GCAGC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	979
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	979
Bsu36I	CCTNAGG	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	379, 448
BtgI	CCRYGG	2 cut(s)	666, 675
BtgZI	GCGATG	1 cut(s)	747
BtsCI	GGATG	5 cut(s)	10, 278, 391, 808, 958
BtsI	GCAGTG	2 cut(s)	820, 904
BtsIMutI	CAGTG	2 cut(s)	820, 904
CciI	TCATGA	1 cut(s)	22
CviAII	CATG	6 cut(s)	23, 248, 476, 729, 967, 1018
DdeI	CTNAG	7 cut(s)	180, 374, 498, 521, 696, 857, 945
DpnI	GATC	2 cut(s)	212, 981
DpnII	GATC	2 cut(s)	210, 979
Eam1104I	CTCTTC	4 cut(s)	500, 505, 653, 712
EarI	CTCTTC	4 cut(s)	500, 505, 653, 712
EciI	GGCGGA	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	58, 424
Eco147I	AGGCCT	1 cut(s)	448
Eco31I	GGTCTC	2 cut(s)	190, 709
Eco81I	CCTNAGG	1 cut(s)	374
EcoRI	GAATTC	2 cut(s)	316, 816
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	58, 424
ErhI	CCWWGG	2 cut(s)	58, 424
FaeI	CATG	6 cut(s)	26, 251, 479, 732, 970, 1021
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	6 cut(s)	22, 247, 475, 728, 966, 1017
FauI	CCCGC	1 cut(s)	780
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	754
FokI	GGATG	5 cut(s)	17, 265, 398, 815, 965
Fsp4HI	GCNGC	1 cut(s)	754
FspBI	CTAG	2 cut(s)	462, 926
GluI	GCNGC	1 cut(s)	754
HaeIII	GGCC	2 cut(s)	379, 448
Hin1II	CATG	6 cut(s)	26, 251, 479, 732, 970, 1021
HindIII	AAGCTT	3 cut(s)	579, 872, 991
HinfI	GANTC	4 cut(s)	531, 671, 764, 811
HphI	GGTGA	3 cut(s)	246, 315, 859
Hpy166II	GTNNAC	2 cut(s)	33, 921
Hpy188I	TCNGA	7 cut(s)	183, 400, 528, 712, 760, 796, 948
Hpy188III	TCNNGA	6 cut(s)	23, 214, 301, 482, 641, 926
Hpy8I	GTNNAC	2 cut(s)	33, 921
HpyAV	CCTTC	6 cut(s)	20, 91, 273, 339, 480, 793
HpyCH4III	ACNGT	3 cut(s)	348, 667, 973
HpyCH4V	TGCA	4 cut(s)	270, 412, 599, 963
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	7 cut(s)	180, 374, 498, 521, 696, 857, 945
Hsp92II	CATG	6 cut(s)	26, 251, 479, 732, 970, 1021
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	210, 979
LmnI	GCTCC	2 cut(s)	624, 774
LpnPI	CCDG	8 cut(s)	26, 211, 213, 386, 543, 570, 686, 845
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	2 cut(s)	462, 926
MaeIII	GTNAC	2 cut(s)	321, 973
MalI	GATC	2 cut(s)	212, 981
MboI	GATC	2 cut(s)	210, 979
MboII	GAAGA	7 cut(s)	267, 517, 522, 670, 699, 700, 717
MflI	RGATCY	1 cut(s)	979
MluCI	AATT	8 cut(s)	67, 175, 271, 310, 316, 777, 816, 852
MnlI	CCTC	8 cut(s)	112, 292, 348, 369, 382, 438, 495, 637
MroXI	GAANNNNTTC	2 cut(s)	469, 873
MseI	TTAA	2 cut(s)	146, 891
MspA1I	CMGCKG	2 cut(s)	225, 700
MspR9I	CCNGG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	965
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	2 cut(s)	210, 979
NlaIII	CATG	6 cut(s)	26, 251, 479, 732, 970, 1021
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	321
NspI	RCATGY	1 cut(s)	251
NspV	TTCGAA	1 cut(s)	814
PagI	TCATGA	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	448
PciI	ACATGT	1 cut(s)	247
PctI	GAATGC	1 cut(s)	965
PdmI	GAANNNNTTC	2 cut(s)	469, 873
PfeI	GAWTC	4 cut(s)	531, 671, 764, 811
PflMI	CCANNNNNTGG	2 cut(s)	225, 493
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	755
PscI	ACATGT	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	979
PvuII	CAGCTG	2 cut(s)	225, 700
SaqAI	TTAA	2 cut(s)	146, 891
SatI	GCNGC	1 cut(s)	754
Sau3AI	GATC	2 cut(s)	210, 979
ScrFI	CCNGG	1 cut(s)	558
SfaNI	GCATC	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	814
SmlI	CTYRAG	3 cut(s)	480, 641, 994
SmoI	CTYRAG	3 cut(s)	480, 641, 994
Sse9I	AATT	8 cut(s)	67, 175, 271, 310, 316, 777, 816, 852
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	2 cut(s)	546, 773
SspMI	CTAG	2 cut(s)	462, 926
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	58, 424
TaaI	ACNGT	3 cut(s)	348, 667, 973
TaqI	TCGA	2 cut(s)	300, 814
TasI	AATT	8 cut(s)	67, 175, 271, 310, 316, 777, 816, 852
TfiI	GAWTC	4 cut(s)	531, 671, 764, 811
Tru1I	TTAA	2 cut(s)	146, 891
Tru9I	TTAA	2 cut(s)	146, 891
TscAI	CASTG	2 cut(s)	827, 904
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	1 cut(s)	753
Tsp45I	GTSAC	1 cut(s)	321
TspGWI	ACGGA	2 cut(s)	664, 992
TspRI	CASTG	2 cut(s)	827, 904
Van91I	CCANNNNNTGG	2 cut(s)	225, 493
XapI	RAATTY	5 cut(s)	67, 310, 316, 816, 852
XbaI	TCTAGA	1 cut(s)	925
XceI	RCATGY	1 cut(s)	251
XmnI	GAANNNNTTC	2 cut(s)	469, 873
XspI	CTAG	2 cut(s)	462, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.