Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

11048745 .. 11050990

Gene Structure 2246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGACGCATCATCAGCAAAATGGTTTTCGGATTTGGGAATGGATGATTACAACTTCATTCAAGAAGGGTTTACAGCACAGGACATAGCAACTGCACTTGGGGGAAATTTCAAACAATCTTTCTCCAATGAGAGTTATTCATCTTATTCAACTCTGACTACCCAAAATACCCCCAACACCACATTAAGTGGTGGTTCATCTATCAATGAGACTAATTCTCAGACGAGCTTTGAGAGACCAGCCAAACTGGTCAAGACCAACAACTGGAACTCTGGCATTACAGAACATGTTTCACCAAAGCCTTCTTCCAATTCTTCTTCCTCCCATATTCTTTCTTTCGAGAACGCAAACTTGAATTCCTCACCACCTTCCAAGCCTCATCAGAAGTTTTCTAATGGTTTTGACACCCTGAAGCCAAAAGAGGAGGCACCATCCCAAATATGTATGCAGTTTGAGAACCAAGGCTATGGAACTAATAAGAGGCCTTACTCAATGACTAGAACACCATCACATGCTCAAGACCACATAATGGCTGAGAGAAAGAGAAGAGAAAAGCTCAGTCAGAGATTCATAGCTCTTTCTGCCATCGTTCCTGGCCTAAAAAAGATGGACAAAGCTTCTGTTCTTGGAGATGCAATCAAGTATGTGAAGCAGCTCCAAGAAAGTGTCAAAGTTCTTGAGGAACAGACCAAGAAAAGAACCGTGGAATCTGTGGTATTTGTGAAGAAGTCTCAGCTGGTCTCTTCTGATGATGACACTTCTTCATGCGATGAGAACTTTGACAGTCGCTGCTCTGATGAACCACTCCCGCAAATTGAAGCAAGAGTTTCAGAGAAGGATGTATTGATACGAATTCACTGCGAAAACCAGAAAGGATATGTGGTGAAAGTTCTAAGCGAATTAGAAAATCTTCAACTATCTGTGGTTAATAGCAGTGTCTTGCCATTTGGAAAGTCCACTCTAGACATAACCATTGTTGCTCAGATGGATGATGAATTCAACATGACGGTGACGGATCTTGCCAAAAGCTTGAGAGTGGCTCTATTGAAGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

353

Amino Acids

39.14

Weight (kDa)

6.13

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	175 - 220	1.4e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	179 - 225	5.1e-06	Transcription factor SAC51 bHLH domain
bHLH-TF_ACT-like_plant	PF22754	276 - 332	3e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	2 cut(s)	264, 529
AciI	CCGC	1 cut(s)	809
AclWI	GGATC	1 cut(s)	1023
AcsI	RAATTY	4 cut(s)	106, 355, 852, 995
AcuI	CTGAAG	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	264, 529
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	8 cut(s)	62, 112, 150, 355, 818, 914, 1000, 1048
AjnI	CCWGG	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	7 cut(s)	228, 556, 575, 617, 655, 736, 1029
AluI	AGCT	7 cut(s)	228, 556, 575, 617, 655, 736, 1029
Alw26I	GTCTC	4 cut(s)	203, 229, 735, 745
AlwI	GGATC	1 cut(s)	1023
AlwNI	CAGNNNCTG	1 cut(s)	789
AoxI	GGCC	2 cut(s)	482, 595
ApeKI	GCWGC	2 cut(s)	652, 789
ApoI	RAATTY	4 cut(s)	106, 355, 852, 995
Asp700I	GAANNNNTTC	1 cut(s)	909
AsuHPI	GGTGA	4 cut(s)	285, 354, 895, 1021
BanI	GGYRCC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	664, 776
BccI	CCATC	5 cut(s)	439, 514, 593, 601, 979
BcgI	CGANNNNNNTGC	2 cut(s)	840, 874
BciT130I	CCWGG	1 cut(s)	594
BcoDI	GTCTC	4 cut(s)	203, 229, 735, 745
BfaI	CTAG	2 cut(s)	498, 962
BisI	GCNGC	2 cut(s)	653, 790
BlsI	GCNGC	2 cut(s)	654, 791
Bme1390I	CCNGG	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	2 cut(s)	17, 622
BplI	GAGNNNNNCTC	4 cut(s)	540, 572, 1024, 1056
BpuEI	CTTGAG	3 cut(s)	501, 698, 1051
BsaI	GGTCTC	2 cut(s)	229, 745
BsaJI	CCNNGG	2 cut(s)	460, 702
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 529
Bse1I	ACTGG	2 cut(s)	252, 269
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	460, 702
BseGI	GGATG	4 cut(s)	49, 431, 844, 994
BseLI	CCNNNNNNNGG	2 cut(s)	264, 529
BseMII	CTCAG	5 cut(s)	233, 525, 571, 746, 995
BseNI	ACTGG	2 cut(s)	252, 269
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	664, 776
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	484, 597
BshNI	GGYRCC	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	264, 529
BsmAI	GTCTC	4 cut(s)	203, 229, 735, 745
BsnI	GGCC	2 cut(s)	484, 597
Bso31I	GGTCTC	2 cut(s)	229, 745
Bsp143I	GATC	1 cut(s)	1015
BspACI	CCGC	1 cut(s)	809
BspANI	GGCC	2 cut(s)	484, 597
BspCNI	CTCAG	5 cut(s)	232, 526, 570, 745, 994
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	1023
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	2 cut(s)	229, 745
BsrI	ACTGG	2 cut(s)	252, 269
BssECI	CCNNGG	2 cut(s)	460, 702
BssMI	GATC	1 cut(s)	1015
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	3 cut(s)	703, 785, 1009
Bst6I	CTCTTC	2 cut(s)	541, 748
BstDEI	CTNAG	6 cut(s)	219, 534, 557, 732, 893, 981
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	4 cut(s)	49, 431, 844, 994
BstKTI	GATC	1 cut(s)	1018
BstMAI	GTCTC	4 cut(s)	203, 229, 735, 745
BstMBI	GATC	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 581
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	2 cut(s)	290, 515
BstSCI	CCNGG	1 cut(s)	592
BstV1I	GCAGC	2 cut(s)	664, 776
BstX2I	RGATCY	1 cut(s)	1015
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	1015
BsuRI	GGCC	2 cut(s)	484, 597
BtgI	CCRYGG	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	783
BtsCI	GGATG	4 cut(s)	49, 431, 844, 994
BtsI	GCAGTG	2 cut(s)	856, 940
BtsIMutI	CAGTG	2 cut(s)	856, 940
CaiI	CAGNNNCTG	1 cut(s)	789
CseI	GACGC	1 cut(s)	14
CviAII	CATG	5 cut(s)	287, 512, 765, 1003, 1054
DdeI	CTNAG	6 cut(s)	219, 534, 557, 732, 893, 981
DpnI	GATC	1 cut(s)	1017
DpnII	GATC	1 cut(s)	1015
Eam1104I	CTCTTC	2 cut(s)	541, 748
EarI	CTCTTC	2 cut(s)	541, 748
Eco130I	CCWWGG	1 cut(s)	460
Eco147I	AGGCCT	1 cut(s)	484
Eco31I	GGTCTC	2 cut(s)	229, 745
Eco57I	CTGAAG	1 cut(s)	431
EcoRI	GAATTC	3 cut(s)	355, 852, 995
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	5 cut(s)	290, 515, 768, 1006, 1057
FatI	CATG	5 cut(s)	286, 511, 764, 1002, 1053
FauI	CCCGC	1 cut(s)	816
Fnu4HI	GCNGC	2 cut(s)	653, 790
FokI	GGATG	4 cut(s)	56, 418, 851, 1001
Fsp4HI	GCNGC	2 cut(s)	653, 790
FspBI	CTAG	2 cut(s)	498, 962
GluI	GCNGC	2 cut(s)	653, 790
HaeIII	GGCC	2 cut(s)	484, 597
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	290, 515, 768, 1006, 1057
HindIII	AAGCTT	2 cut(s)	615, 1027
HinfI	GANTC	2 cut(s)	567, 707
HphI	GGTGA	4 cut(s)	285, 354, 895, 1021
Hpy166II	GTNNAC	2 cut(s)	72, 957
Hpy188I	TCNGA	9 cut(s)	31, 156, 222, 384, 564, 748, 796, 832, 984
Hpy188III	TCNNGA	6 cut(s)	62, 253, 340, 518, 677, 962
Hpy8I	GTNNAC	2 cut(s)	72, 957
HpyAV	CCTTC	4 cut(s)	59, 312, 378, 829
HpyCH4III	ACNGT	3 cut(s)	703, 785, 1009
HpyCH4V	TGCA	3 cut(s)	95, 448, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 581
HpyF3I	CTNAG	6 cut(s)	219, 534, 557, 732, 893, 981
Hsp92II	CATG	5 cut(s)	290, 515, 768, 1006, 1057
Kzo9I	GATC	1 cut(s)	1015
LmnI	GCTCC	1 cut(s)	660
Lsp1109I	GCAGC	2 cut(s)	664, 776
LweI	GCATC	2 cut(s)	17, 622
MaeI	CTAG	2 cut(s)	498, 962
MaeIII	GTNAC	1 cut(s)	1009
MalI	GATC	1 cut(s)	1017
MboI	GATC	1 cut(s)	1015
MboII	GAAGA	8 cut(s)	297, 306, 309, 558, 735, 736, 753, 902
MflI	RGATCY	1 cut(s)	1015
MluCI	AATT	8 cut(s)	106, 214, 310, 355, 813, 852, 899, 995
MnlI	CCTC	7 cut(s)	331, 370, 387, 415, 418, 474, 673
MroXI	GAANNNNTTC	1 cut(s)	909
MseI	TTAA	2 cut(s)	185, 927
MslI	CAYNNNNRTG	1 cut(s)	1007
MspA1I	CMGCKG	1 cut(s)	736
MspR9I	CCNGG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	14, 581
NdeII	GATC	1 cut(s)	1015
NlaIII	CATG	5 cut(s)	290, 515, 768, 1006, 1057
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	1009
NspI	RCATGY	2 cut(s)	290, 515
PceI	AGGCCT	1 cut(s)	484
PciI	ACATGT	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	909
PfeI	GAWTC	2 cut(s)	567, 707
PflMI	CCANNNNNTGG	2 cut(s)	264, 529
PkrI	GCNGC	2 cut(s)	654, 791
PscI	ACATGT	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	789
PsuI	RGATCY	1 cut(s)	1015
PvuII	CAGCTG	1 cut(s)	736
RseI	CAYNNNNRTG	1 cut(s)	1007
SaqAI	TTAA	2 cut(s)	185, 927
SatI	GCNGC	2 cut(s)	653, 790
Sau3AI	GATC	1 cut(s)	1015
ScrFI	CCNGG	1 cut(s)	594
SetI	ASST	8 cut(s)	230, 370, 558, 577, 619, 657, 738, 1031
SfaNI	GCATC	2 cut(s)	17, 622
SmiMI	CAYNNNNRTG	1 cut(s)	1007
SmlI	CTYRAG	3 cut(s)	516, 677, 1030
SmoI	CTYRAG	3 cut(s)	516, 677, 1030
Sse9I	AATT	8 cut(s)	106, 214, 310, 355, 813, 852, 899, 995
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	1 cut(s)	809
SspMI	CTAG	2 cut(s)	498, 962
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	3 cut(s)	703, 785, 1009
TaqI	TCGA	1 cut(s)	339
TasI	AATT	8 cut(s)	106, 214, 310, 355, 813, 852, 899, 995
TfiI	GAWTC	2 cut(s)	567, 707
Tru1I	TTAA	2 cut(s)	185, 927
Tru9I	TTAA	2 cut(s)	185, 927
TscAI	CASTG	2 cut(s)	863, 940
TseFI	GTSAC	1 cut(s)	1009
TseI	GCWGC	2 cut(s)	652, 789
Tsp45I	GTSAC	1 cut(s)	1009
TspDTI	ATGAA	8 cut(s)	46, 129, 186, 559, 753, 813, 1008, 1042
TspGWI	ACGGA	1 cut(s)	1028
TspRI	CASTG	2 cut(s)	863, 940
Van91I	CCANNNNNTGG	2 cut(s)	264, 529
XapI	RAATTY	4 cut(s)	106, 355, 852, 995
XbaI	TCTAGA	1 cut(s)	961
XceI	RCATGY	2 cut(s)	290, 515
XmnI	GAANNNNTTC	1 cut(s)	909
XspI	CTAG	2 cut(s)	498, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.