Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

13238615 .. 13240339

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGATTTCATCAAGAGGAGGATTATCTGAGCTGGGAATGGAAGATCCCTTCTTCATCAACCAGTTGCAGTACATGAACTCTTTGGATGAGCTCGGTATGCTCCCACTAGCAACTGCAATTGGAGATAATTTACAACACTCTCACTTCCACCCAACTTTCAACTTCAAAACTCCTATCGATAATTCTCATACTGGTATTGATGGACCGGCGAAACAGCTCAAAACCGATGGATGGACTTCATGCAAAACCAATCATCTTGGATCGAATCCACAAGTTGCTTCCTCACCAAACATTCTTTCGTTCATCAATTCTAATCACGCGAACCAAATGGCGGTGCTTAAGCCTAAGGAGGAGGCAGCAGCAGTGTGTTCAAAGAGCACCAACAGTCTCCCTTCTGATATATTGCTTTCTCAAGGTTCATTTGGAAACCAAAATTGTTTATTTAAGGCCAGTCAGGGAACAAATATGAACAGCACAAACCCTCGTCTTTCAGCAACTCAAGATCATATTATCGCAGAAAGGAAGCGCAGAGAGAAGCTCAGCCAGCGGTTCATAGCTTTATCTGCACTCATTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTTCTGGGAGATTCAATCAAGTACATCAAACAACTGCAGGACAAGGTAAAGACACTTGAGGAACAGACGAGAAACAAAAACATGGAATCGGTCATGTTTGTGAAGAAAACACAGCTTTTTTCCAATGGTGACAAAACTTCCTCAGACGAAAGCAACTCCACAGGCCCGTTTGACGCAACACTACCTGAAATCGAAGCAAGGTTCTGTGACAACAATGTCTTGATAAGAATCCACTGTGAGAAAAGGAAAGGAGTTGTGGAGAAAACAATATCAGAGGTTGAGAAGCTCCAATTAAAATTCATCAATAGTAGTGTCATGACATTTGGGAGCTGTGCTCTTGACGTTACCATTATTGCTCAGATGGAAGCGGAATTCAGCCTCTCGGTGCAGGATCTCGTCAAGAATCTACGCACAGCTTTCAATCTGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

347

Amino Acids

38.3

Weight (kDa)

7.64

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
AccII	CGCG	1 cut(s)	323
AciI	CCGC	3 cut(s)	335, 550, 974
AclWI	GGATC	3 cut(s)	41, 271, 1005
AcsI	RAATTY	2 cut(s)	902, 977
AfaI	GTAC	2 cut(s)	74, 629
AfiI	CCNNNNNNNGG	2 cut(s)	234, 334
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	5 cut(s)	163, 169, 375, 621, 1027
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AluBI	AGCT	9 cut(s)	34, 94, 220, 541, 560, 721, 892, 936, 1022
AluI	AGCT	9 cut(s)	34, 94, 220, 541, 560, 721, 892, 936, 1022
Alw21I	GWGCWC	3 cut(s)	96, 383, 943
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	3 cut(s)	41, 271, 1005
AoxI	GGCC	3 cut(s)	450, 580, 769
ApeKI	GCWGC	2 cut(s)	359, 362
ApoI	RAATTY	2 cut(s)	902, 977
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	206, 770
AsuHPI	GGTGA	2 cut(s)	279, 746
AvaII	GGWCC	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	3 cut(s)	96, 383, 943
BbvI	GCAGC	2 cut(s)	371, 374
BccI	CCATC	5 cut(s)	197, 224, 228, 586, 961
BciT130I	CCWGG	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	641
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	360, 363
BlpI	GCTNAGC	1 cut(s)	542
BlsI	GCNGC	2 cut(s)	361, 364
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	206, 770
BmrFI	CCNGG	1 cut(s)	579
BplI	GAGNNNNNCTC	4 cut(s)	525, 557, 925, 957
Bpu1102I	GCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	3 cut(s)	399, 486, 683
Bsa29I	ATCGAT	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	833
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 334
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	3 cut(s)	64, 199, 453
Bse21I	CCTNAGG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	833
BseBI	CCWGG	1 cut(s)	579
BseCI	ATCGAT	1 cut(s)	180
BseGI	GGATG	2 cut(s)	94, 239
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	2 cut(s)	234, 334
BseMII	CTCAG	4 cut(s)	21, 556, 762, 977
BseNI	ACTGG	3 cut(s)	64, 199, 453
BseRI	GAGGAG	2 cut(s)	33, 368
BseXI	GCAGC	2 cut(s)	371, 374
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	2 cut(s)	552, 1013
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	3 cut(s)	452, 582, 771
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	3 cut(s)	96, 383, 943
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	234, 334
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	452, 582, 771
Bsp1286I	GDGCHC	3 cut(s)	96, 383, 943
Bsp143I	GATC	4 cut(s)	46, 263, 505, 997
Bsp1720I	GCTNAGC	1 cut(s)	542
BspACI	CCGC	3 cut(s)	335, 550, 974
BspANI	GGCC	3 cut(s)	452, 582, 771
BspCNI	CTCAG	4 cut(s)	22, 555, 761, 976
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	921
BspMAI	CTGCAG	1 cut(s)	645
BspPI	GGATC	3 cut(s)	41, 271, 1005
BspTI	CTTAAG	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	3 cut(s)	64, 199, 453
BssAI	RCCGGY	1 cut(s)	208
BssMI	GATC	4 cut(s)	46, 263, 505, 997
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	2 cut(s)	389, 842
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	5 cut(s)	30, 348, 542, 748, 963
BstF5I	GGATG	2 cut(s)	94, 239
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	4 cut(s)	49, 266, 508, 1000
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	46, 263, 505, 997
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 547, 566
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	577
BstSFI	CTRYAG	1 cut(s)	641
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	371, 374
BstX2I	RGATCY	2 cut(s)	46, 997
BstYI	RGATCY	2 cut(s)	46, 997
Bsu15I	ATCGAT	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	452, 582, 771
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	94, 239
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 838
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	921
CfoI	GCGC	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	206, 770
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	73, 628
CviAII	CATG	6 cut(s)	76, 243, 688, 700, 922, 1036
CviQI	GTAC	2 cut(s)	73, 628
DdeI	CTNAG	5 cut(s)	30, 348, 542, 748, 963
DpnI	GATC	4 cut(s)	48, 265, 507, 999
DpnII	GATC	4 cut(s)	46, 263, 505, 997
DrdI	GACNNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	821
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	6 cut(s)	79, 246, 691, 703, 925, 1039
FatI	CATG	6 cut(s)	75, 242, 687, 699, 921, 1035
Fnu4HI	GCNGC	2 cut(s)	360, 363
FokI	GGATG	2 cut(s)	101, 246
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	360, 363
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	2 cut(s)	360, 363
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	452, 582, 771
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	6 cut(s)	79, 246, 691, 703, 925, 1039
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HinfI	GANTC	5 cut(s)	268, 617, 692, 834, 1009
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	279, 746
Hpy188I	TCNGA	5 cut(s)	31, 400, 751, 880, 966
Hpy188III	TCNNGA	6 cut(s)	15, 503, 826, 922, 944, 1006
HpyAV	CCTTC	2 cut(s)	61, 405
HpyCH4III	ACNGT	2 cut(s)	389, 842
HpyCH4IV	ACGT	1 cut(s)	948
HpyCH4V	TGCA	6 cut(s)	70, 119, 246, 569, 643, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 547, 566
HpyF3I	CTNAG	5 cut(s)	30, 348, 542, 748, 963
HpySE526I	ACGT	1 cut(s)	948
Hsp92II	CATG	6 cut(s)	79, 246, 691, 703, 925, 1039
HspAI	GCGC	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	46, 263, 505, 997
LmnI	GCTCC	3 cut(s)	108, 897, 933
Lsp1109I	GCAGC	2 cut(s)	371, 374
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	948
MaeIII	GTNAC	3 cut(s)	734, 812, 949
MalI	GATC	4 cut(s)	48, 265, 507, 999
MboI	GATC	4 cut(s)	46, 263, 505, 997
MboII	GAAGA	4 cut(s)	46, 56, 601, 721
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	2 cut(s)	46, 997
MhlI	GDGCHC	3 cut(s)	96, 383, 943
MluCI	AATT	8 cut(s)	120, 130, 184, 310, 436, 896, 902, 977
MseI	TTAA	3 cut(s)	342, 447, 899
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	550
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	579
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	579
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	100, 547, 566
NdeII	GATC	4 cut(s)	46, 263, 505, 997
NlaIII	CATG	6 cut(s)	79, 246, 691, 703, 925, 1039
NmuCI	GTSAC	2 cut(s)	734, 812
PagI	TCATGA	1 cut(s)	921
PfeI	GAWTC	5 cut(s)	268, 617, 692, 834, 1009
PkrI	GCNGC	2 cut(s)	361, 364
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	577
PspPI	GGNCC	2 cut(s)	206, 770
PstI	CTGCAG	1 cut(s)	645
PsuI	RGATCY	2 cut(s)	46, 997
RsaI	GTAC	2 cut(s)	74, 629
RsaNI	GTAC	2 cut(s)	73, 628
RseI	CAYNNNNRTG	1 cut(s)	704
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	342, 447, 899
SatI	GCNGC	2 cut(s)	360, 363
Sau3AI	GATC	4 cut(s)	46, 263, 505, 997
Sau96I	GGNCC	2 cut(s)	206, 770
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	3 cut(s)	96, 383, 943
SfcI	CTRYAG	1 cut(s)	641
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	4 cut(s)	341, 414, 501, 662
SmoI	CTYRAG	4 cut(s)	341, 414, 501, 662
Sse9I	AATT	8 cut(s)	120, 130, 184, 310, 436, 896, 902, 977
SsiI	CCGC	3 cut(s)	335, 550, 974
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	577
TaaI	ACNGT	2 cut(s)	389, 842
TaiI	ACGT	1 cut(s)	951
TaqI	TCGA	3 cut(s)	180, 266, 798
TaqII	GACCGA	1 cut(s)	685
TasI	AATT	8 cut(s)	120, 130, 184, 310, 436, 896, 902, 977
TatI	WGTACW	2 cut(s)	72, 627
TfiI	GAWTC	5 cut(s)	268, 617, 692, 834, 1009
Tru1I	TTAA	3 cut(s)	342, 447, 899
Tru9I	TTAA	3 cut(s)	342, 447, 899
TscAI	CASTG	2 cut(s)	372, 845
TseFI	GTSAC	2 cut(s)	734, 812
TseI	GCWGC	2 cut(s)	359, 362
Tsp45I	GTSAC	2 cut(s)	734, 812
TspDTI	ATGAA	9 cut(s)	46, 92, 231, 295, 411, 485, 544, 895, 1024
TspRI	CASTG	2 cut(s)	372, 845
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	902, 977
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.