Prupe.8G157500_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000792
Physical Location & Seq
Reverse (-)
16783129 .. 16785677
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G157500.2

Sequence Viewer

Length: 1035 bp
ATGGAGATTTCGTCGATAGGAGGGATGTCTGAACTGGGAATGGAAGATCCCTACTTCATCAACCAGTGGCACATGAACTCTCTGGATGAAGTCAGCATGCTGCCACTAGCAGCTCCATTTGGAGAGAACTTTAACCAGTCTCACTTTCACCCAAATTTCAATCTTAAAACTTCTATGGATAGTTGTCATAGTGGCATTGATAGACCCATGAAACAGCTCAAAACTGATGGCTGGAGTTCATGCAAAACCGATCAACACGGATCGAACCCGCAAGTTGCTTCCTCTCCAAATATTCTTTCCTTTGTCAACTCTAATAGCACAAACCAAATGGGGGTTCTTAAGCCTAAGGAGGAGGCAGCAGTGTGTTCAAAGAGCAACAACAGTCTCCCTTCTGACATATTGCTCTCTCAAAGTTCGTTTGGCAACCAAAGTTATTTGTTTAAGGCCAGTCAGGGAACAAAGAGGGTCAACACAAACACTAGGCTTTCTACAACTCAAGATCACATTATTGCAGAAAGGAAAAGGAGAGAGAAGCTCAGCCAACGGTTCATAGCTTTATCTGCAATGGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTTCTTGGAGATGCTATCAAGTATATCAAACAACTGCAGGACAAGGTAAAAACACTTGAGGAACAGACCAGAAAGAAAAACATGGAATCCGTCGTCTTTGTGAAGAAAACGCAGCTCTTCGCCAACGATGACAACTCATCCTCAGAAGAAAATAATTCCAGTGGCCCCTTTGAGGAGACACTGCCTGAAATTGAAGCAAGGTTCTGTGACAACAATGTCATGATAAGAATTCACTGTGAGAAAAGAAAAGGAGTTGTGGAGAAAACTATAGCAGAGGTTGAGAAGCTCCAACTTAAGTTCATCAATAGCAGTGTCTTGACATTTGGGGGCTGTGCTCTTGATGTAACCATTATTGCTCAGATGGAAGTGGAATTCAGCCTCTCAGTGAAGGAACTTGTCAAGAATCTACGCTCTGCTTTCGACATGTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

345

Amino Acids

38.53

Weight (kDa)

7.05

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 815
AciI CCGC 1 cut(s) 269
AclWI GGATC 2 cut(s) 41, 268
AcsI RAATTY 3 cut(s) 154, 828, 971
AfiI CCNNNNNNNGG 2 cut(s) 331, 772
AflII CTTAAG 2 cut(s) 338, 893
AflIII ACRYGT 1 cut(s) 1023
AgsI TTSAA 3 cut(s) 160, 369, 794
AjnI CCWGG 1 cut(s) 571
AjuI GAANNNNNNNTTGG 4 cut(s) 280, 312, 318, 350
AluBI AGCT 6 cut(s) 113, 217, 535, 554, 715, 886
AluI AGCT 6 cut(s) 113, 217, 535, 554, 715, 886
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 3 cut(s) 144, 389, 770
AlwI GGATC 2 cut(s) 41, 268
AoxI GGCC 3 cut(s) 444, 574, 763
ApeKI GCWGC 4 cut(s) 100, 110, 356, 712
ApoI RAATTY 3 cut(s) 154, 828, 971
AspS9I GGNCC 1 cut(s) 764
AsuHPI GGTGA 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 937
BbvI GCAGC 4 cut(s) 87, 122, 368, 724
BccI CCATC 3 cut(s) 221, 580, 955
BciT130I CCWGG 1 cut(s) 573
BcoDI GTCTC 3 cut(s) 144, 389, 770
BfaI CTAG 2 cut(s) 107, 480
BfmI CTRYAG 2 cut(s) 635, 867
BfrI CTTAAG 2 cut(s) 338, 893
BisI GCNGC 4 cut(s) 101, 111, 357, 713
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 4 cut(s) 102, 112, 358, 714
Bme1390I CCNGG 1 cut(s) 573
BmgT120I GGNCC 1 cut(s) 764
BmiI GGNNCC 2 cut(s) 570, 766
BmrFI CCNGG 1 cut(s) 573
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 601
BmuI ACTGGG 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 519, 551
BpmI CTGGAG 1 cut(s) 253
Bpu1102I GCTNAGC 1 cut(s) 536
BpuEI CTTGAG 2 cut(s) 480, 677
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 772
Bse1I ACTGG 5 cut(s) 39, 64, 136, 447, 759
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 1 cut(s) 573
BseGI GGATG 3 cut(s) 30, 91, 737
BseLI CCNNNNNNNGG 2 cut(s) 331, 772
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 4 cut(s) 550, 756, 971, 996
BseNI ACTGG 5 cut(s) 39, 64, 136, 447, 759
BseRI GAGGAG 2 cut(s) 365, 788
BseXI GCAGC 4 cut(s) 87, 122, 368, 724
BshFI GGCC 3 cut(s) 446, 576, 765
BsiHKAI GWGCWC 1 cut(s) 937
BslI CCNNNNNNNGG 2 cut(s) 331, 772
BsmAI GTCTC 3 cut(s) 144, 389, 770
BsnI GGCC 3 cut(s) 446, 576, 765
Bsp1286I GDGCHC 1 cut(s) 937
Bsp143I GATC 4 cut(s) 46, 250, 260, 499
Bsp1720I GCTNAGC 1 cut(s) 536
BspACI CCGC 1 cut(s) 269
BspANI GGCC 3 cut(s) 446, 576, 765
BspCNI CTCAG 4 cut(s) 549, 755, 970, 995
BspHI TCATGA 1 cut(s) 819
BspLI GGNNCC 2 cut(s) 570, 766
BspMAI CTGCAG 1 cut(s) 639
BspPI GGATC 2 cut(s) 41, 268
BspQI GCTCTTC 1 cut(s) 722
BspTI CTTAAG 2 cut(s) 338, 893
BsrDI GCAATG 1 cut(s) 570
BsrI ACTGG 5 cut(s) 39, 64, 136, 447, 759
BssMI GATC 4 cut(s) 46, 250, 260, 499
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 3 cut(s) 383, 546, 836
Bst6I CTCTTC 1 cut(s) 722
BstAFI CTTAAG 2 cut(s) 338, 893
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 5 cut(s) 345, 536, 742, 957, 982
BstF5I GGATG 3 cut(s) 30, 91, 737
BstKTI GATC 4 cut(s) 49, 253, 263, 502
BstMAI GTCTC 3 cut(s) 144, 389, 770
BstMBI GATC 4 cut(s) 46, 250, 260, 499
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 2 cut(s) 100, 1027
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 2 cut(s) 635, 867
BstV1I GCAGC 4 cut(s) 87, 122, 368, 724
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 3 cut(s) 446, 576, 765
BtsCI GGATG 3 cut(s) 30, 91, 737
BtsI GCAGTG 3 cut(s) 366, 779, 916
BtsIMutI CAGTG 7 cut(s) 71, 366, 766, 779, 832, 916, 990
Cac8I GCNNGC 1 cut(s) 98
CciI TCATGA 1 cut(s) 819
Cfr13I GGNCC 1 cut(s) 764
CviAII CATG 8 cut(s) 73, 97, 208, 240, 682, 820, 1024, 1030
DdeI CTNAG 5 cut(s) 345, 536, 742, 957, 982
DpnI GATC 4 cut(s) 48, 252, 262, 501
DpnII GATC 4 cut(s) 46, 250, 260, 499
DrdI GACNNNNNNGTC 1 cut(s) 815
DseDI GACNNNNNNGTC 1 cut(s) 815
Eam1104I CTCTTC 1 cut(s) 722
EarI CTCTTC 1 cut(s) 722
Eco81I CCTNAGG 1 cut(s) 345
EcoRI GAATTC 2 cut(s) 828, 971
EcoRII CCWGG 1 cut(s) 571
FaeI CATG 8 cut(s) 76, 100, 211, 243, 685, 823, 1027, 1033
FatI CATG 8 cut(s) 72, 96, 207, 239, 681, 819, 1023, 1029
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 101, 111, 357, 713
FokI GGATG 3 cut(s) 37, 98, 724
Fsp4HI GCNGC 4 cut(s) 101, 111, 357, 713
FspBI CTAG 2 cut(s) 107, 480
GluI GCNGC 4 cut(s) 101, 111, 357, 713
GsuI CTGGAG 1 cut(s) 253
HaeIII GGCC 3 cut(s) 446, 576, 765
Hin1II CATG 8 cut(s) 76, 100, 211, 243, 685, 823, 1027, 1033
HincII GTYRAC 2 cut(s) 307, 469
HindII GTYRAC 2 cut(s) 307, 469
HinfI GANTC 2 cut(s) 686, 1003
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 307, 469
Hpy188I TCNGA 4 cut(s) 31, 394, 745, 960
Hpy188III TCNNGA 6 cut(s) 83, 497, 820, 916, 938, 1000
Hpy8I GTNNAC 2 cut(s) 307, 469
Hpy99I CGWCG 2 cut(s) 16, 695
HpyAV CCTTC 2 cut(s) 399, 982
HpyCH4III ACNGT 3 cut(s) 383, 546, 836
HpyCH4V TGCA 4 cut(s) 243, 512, 563, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 5 cut(s) 345, 536, 742, 957, 982
Hsp92II CATG 8 cut(s) 76, 100, 211, 243, 685, 823, 1027, 1033
Kzo9I GATC 4 cut(s) 46, 250, 260, 499
LguI GCTCTTC 1 cut(s) 722
LmnI GCTCC 2 cut(s) 118, 891
Lsp1109I GCAGC 4 cut(s) 87, 122, 368, 724
LweI GCATC 1 cut(s) 601
MaeI CTAG 2 cut(s) 107, 480
MaeIII GTNAC 2 cut(s) 806, 943
MalI GATC 4 cut(s) 48, 252, 262, 501
MboI GATC 4 cut(s) 46, 250, 260, 499
MboII GAAGA 5 cut(s) 56, 595, 709, 715, 758
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 937
MluCI AATT 5 cut(s) 154, 754, 789, 828, 971
MmeI TCCRAC 1 cut(s) 913
MseI TTAA 5 cut(s) 132, 165, 339, 441, 894
MslI CAYNNNNRTG 1 cut(s) 1028
MspCI CTTAAG 2 cut(s) 338, 893
MspR9I CCNGG 1 cut(s) 573
MvaI CCWGG 1 cut(s) 573
MwoI GCNNNNNNNGC 1 cut(s) 560
NdeII GATC 4 cut(s) 46, 250, 260, 499
NlaIII CATG 8 cut(s) 76, 100, 211, 243, 685, 823, 1027, 1033
NlaIV GGNNCC 2 cut(s) 570, 766
NmuCI GTSAC 1 cut(s) 806
NspI RCATGY 2 cut(s) 100, 1027
PaeI GCATGC 1 cut(s) 100
PagI TCATGA 1 cut(s) 819
PciI ACATGT 1 cut(s) 1023
PciSI GCTCTTC 1 cut(s) 722
PfeI GAWTC 2 cut(s) 686, 1003
PkrI GCNGC 4 cut(s) 102, 112, 358, 714
PscI ACATGT 1 cut(s) 1023
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 2 cut(s) 570, 766
PspPI GGNCC 1 cut(s) 764
PstI CTGCAG 1 cut(s) 639
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 1028
SapI GCTCTTC 1 cut(s) 722
SaqAI TTAA 5 cut(s) 132, 165, 339, 441, 894
SatI GCNGC 4 cut(s) 101, 111, 357, 713
Sau3AI GATC 4 cut(s) 46, 250, 260, 499
Sau96I GGNCC 1 cut(s) 764
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 1 cut(s) 937
SetI ASST 9 cut(s) 115, 219, 537, 556, 648, 717, 803, 879, 888
SfaNI GCATC 1 cut(s) 601
SfcI CTRYAG 2 cut(s) 635, 867
SmiMI CAYNNNNRTG 1 cut(s) 1028
SmlI CTYRAG 4 cut(s) 338, 495, 656, 893
SmoI CTYRAG 4 cut(s) 338, 495, 656, 893
SphI GCATGC 1 cut(s) 100
Sse9I AATT 5 cut(s) 154, 754, 789, 828, 971
SsiI CCGC 1 cut(s) 269
SspI AATATT 1 cut(s) 292
SspMI CTAG 2 cut(s) 107, 480
StyD4I CCNGG 1 cut(s) 571
TaaI ACNGT 3 cut(s) 383, 546, 836
TaqI TCGA 3 cut(s) 14, 263, 1020
TasI AATT 5 cut(s) 154, 754, 789, 828, 971
TfiI GAWTC 2 cut(s) 686, 1003
Tru1I TTAA 5 cut(s) 132, 165, 339, 441, 894
Tru9I TTAA 5 cut(s) 132, 165, 339, 441, 894
TscAI CASTG 7 cut(s) 71, 366, 766, 786, 839, 916, 990
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 4 cut(s) 100, 110, 356, 712
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 8 cut(s) 46, 89, 102, 224, 228, 538, 889, 1018
TspGWI ACGGA 2 cut(s) 273, 679
TspRI CASTG 7 cut(s) 71, 366, 766, 786, 839, 916, 990
Vha464I CTTAAG 2 cut(s) 338, 893
XapI RAATTY 3 cut(s) 154, 828, 971
XceI RCATGY 2 cut(s) 100, 1027
XspI CTAG 2 cut(s) 107, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.