Rroxscaffold_7G00214730

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000792
Physical Location & Seq
Reverse (-)
65345226 .. 65347417
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214730.1

Sequence Viewer

Length: 1014 bp
ATGGAGATTTCGTCGATAAGAGGACTAACTGAACTGGGAATGGAGGATCCCTTCTTCGTCAACCAGTGGCACATGAACTCTCTCGATGAGCTCAGCATGCTACCATTATCAGCTGCCTTTGGAGAGAATTTGCAACAGTCCCACTGCCACCCGATTTTAAACCCTAAATCTTCTACCAATACTTCTCTGAGTTCCATTGATAGACCCATGAAACAGCTCAAACCCAACAACTGGAGTCCATCGAACCACCAGTTTGCTTCCTTGCCAAACCTTCTCTCCTTTGTCAATTCATACAACACAAACCAAGTGGGGGTTGTTAAGCATAAGGAGGAGACGGCAGTATGTTCAAAGAACATCAACCATTTCCCTTCTGATATATTGGCTTCTCAAGGTTCATTTGGCAACCAAAACTCTTCATTGAAGGCCAGTCAGGGAACAAACAGGATCAACACAAACACTAGGCTTTCGCAAACTCAAGATCATATAATTGCAGAAAGGAAGCGGCGAGAGAAGCTTAGTCAACGGTTCATTGCTTTATCTGCAATGGTTCCTGGCTTAAAAAAGACGGACAAGGCTTCTGTTCTAGGAGATTCTATCAAGTATATCAAGCAACTACAGGAGAAGGTAAAGACACTTGAGGAGCAGACGAGAGTGAAAAAGATGGAATCAATCGTCTCTGTGAAAAGATCACAGCTCATTGCAAATGATGATAACTCTTCTTCGGACGATAACACCTCCAGTGTTTCATTTGAGGAGACACTGCCAGAAATTGAAGCAAGATTCTGTGACAACAATGTCCTGATAAGAGTTCACTGTGAGAAAAGCAAAGGAGTTGTTGAAAAAACAATTGCTGAGGTTGAGAAGCTGCAACTAAAATTGATCAATAGCAGTGTCATGACATTTGGTAGTTCTGTTCTTGATGTAACCATTGTTGCTCAGATGGAAGTGGAATTCTGTCTCTCAGTGAAGGATGTCGTCAAGAATCTACGCTCAGCTTTCAACTTGTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

337

Amino Acids

37.69

Weight (kDa)

8.2

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 160 - 206 6.2e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 794
AccB7I CCANNNNNTGG 1 cut(s) 231
AciI CCGC 1 cut(s) 502
AclWI GGATC 3 cut(s) 41, 54, 452
AcsI RAATTY 2 cut(s) 127, 950
AfiI CCNNNNNNNGG 2 cut(s) 231, 310
AgsI TTSAA 5 cut(s) 348, 421, 773, 839, 1000
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 7 cut(s) 91, 113, 217, 514, 694, 865, 995
AluI AGCT 7 cut(s) 91, 113, 217, 514, 694, 865, 995
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 4 cut(s) 326, 679, 749, 962
AlwI GGATC 3 cut(s) 41, 54, 452
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 2 cut(s) 113, 865
ApoI RAATTY 2 cut(s) 127, 950
BamHI GGATCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 2 cut(s) 100, 852
BccI CCATC 3 cut(s) 247, 655, 934
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 4 cut(s) 326, 679, 749, 962
BfaI CTAG 2 cut(s) 459, 584
BfmI CTRYAG 1 cut(s) 614
BisI GCNGC 3 cut(s) 114, 503, 866
BlpI GCTNAGC 2 cut(s) 92, 991
BlsI GCNGC 3 cut(s) 115, 504, 867
Bme1390I CCNGG 1 cut(s) 552
BmiI GGNNCC 2 cut(s) 48, 549
BmrFI CCNGG 1 cut(s) 552
BmrI ACTGGG 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 44
BpmI CTGGAG 2 cut(s) 253, 721
Bpu10I CCTNAGC 1 cut(s) 852
Bpu1102I GCTNAGC 2 cut(s) 92, 991
BpuEI CTTGAG 3 cut(s) 372, 459, 656
BsaXI ACNNNNNCTCC 3 cut(s) 26, 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 310
Bse1I ACTGG 6 cut(s) 39, 64, 236, 250, 426, 738
Bse3DI GCAATG 3 cut(s) 528, 549, 696
BseBI CCWGG 1 cut(s) 552
BseGI GGATG 1 cut(s) 976
BseLI CCNNNNNNNGG 2 cut(s) 231, 310
BseMI GCAATG 3 cut(s) 528, 549, 696
BseMII CTCAG 6 cut(s) 106, 179, 843, 950, 975, 1005
BseNI ACTGG 6 cut(s) 39, 64, 236, 250, 426, 738
BseRI GAGGAG 3 cut(s) 344, 653, 767
BseXI GCAGC 2 cut(s) 100, 852
BshFI GGCC 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 231, 310
BsmAI GTCTC 4 cut(s) 326, 679, 749, 962
BsmBI CGTCTC 2 cut(s) 326, 679
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 5 cut(s) 46, 444, 478, 686, 879
Bsp1720I GCTNAGC 2 cut(s) 92, 991
BspACI CCGC 1 cut(s) 502
BspANI GGCC 1 cut(s) 425
BspCNI CTCAG 6 cut(s) 105, 180, 844, 949, 974, 1004
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 2 cut(s) 48, 549
BspPI GGATC 3 cut(s) 41, 54, 452
BsrDI GCAATG 3 cut(s) 528, 549, 696
BsrI ACTGG 6 cut(s) 39, 64, 236, 250, 426, 738
BssMI GATC 5 cut(s) 46, 444, 478, 686, 879
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 3 cut(s) 138, 525, 815
Bst6I CTCTTC 2 cut(s) 418, 721
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 7 cut(s) 92, 188, 515, 852, 936, 961, 991
BstF5I GGATG 1 cut(s) 976
BstKTI GATC 5 cut(s) 49, 447, 481, 689, 882
BstMAI GTCTC 4 cut(s) 326, 679, 749, 962
BstMBI GATC 5 cut(s) 46, 444, 478, 686, 879
BstMWI GCNNNNNNNGC 3 cut(s) 97, 511, 539
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 614
BstV1I GCAGC 2 cut(s) 100, 852
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 425
BtsCI GGATG 1 cut(s) 976
BtsI GCAGTG 3 cut(s) 142, 758, 895
BtsIMutI CAGTG 7 cut(s) 71, 142, 745, 758, 811, 895, 969
Cac8I GCNNGC 1 cut(s) 98
CciI TCATGA 1 cut(s) 894
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 5 cut(s) 73, 97, 208, 895, 1009
DdeI CTNAG 7 cut(s) 92, 188, 515, 852, 936, 961, 991
DpnI GATC 5 cut(s) 48, 446, 480, 688, 881
DpnII GATC 5 cut(s) 46, 444, 478, 686, 879
DraI TTTAAA 1 cut(s) 159
DrdI GACNNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 794
Eam1104I CTCTTC 2 cut(s) 418, 721
EarI CTCTTC 2 cut(s) 418, 721
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 950
EcoRII CCWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 2 cut(s) 326, 679
FaeI CATG 5 cut(s) 76, 100, 211, 898, 1012
FaqI GGGAC 1 cut(s) 124
FatI CATG 5 cut(s) 72, 96, 207, 894, 1008
FbaI TGATCA 1 cut(s) 879
Fnu4HI GCNGC 3 cut(s) 114, 503, 866
FokI GGATG 1 cut(s) 983
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 114, 503, 866
FspBI CTAG 2 cut(s) 459, 584
GluI GCNGC 3 cut(s) 114, 503, 866
GsuI CTGGAG 2 cut(s) 253, 721
HaeIII GGCC 1 cut(s) 425
Hin1II CATG 5 cut(s) 76, 100, 211, 898, 1012
HincII GTYRAC 2 cut(s) 61, 521
HindII GTYRAC 2 cut(s) 61, 521
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 5 cut(s) 235, 590, 665, 780, 982
Hpy166II GTNNAC 3 cut(s) 61, 521, 811
Hpy188I TCNGA 4 cut(s) 189, 373, 724, 939
Hpy188III TCNNGA 6 cut(s) 83, 476, 799, 895, 917, 979
Hpy8I GTNNAC 3 cut(s) 61, 521, 811
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 6 cut(s) 61, 281, 378, 415, 616, 961
HpyCH4III ACNGT 3 cut(s) 138, 525, 815
HpyCH4V TGCA 5 cut(s) 133, 491, 542, 701, 868
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 511, 539
HpyF3I CTNAG 7 cut(s) 92, 188, 515, 852, 936, 961, 991
Hsp92II CATG 5 cut(s) 76, 100, 211, 898, 1012
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 5 cut(s) 46, 444, 478, 686, 879
LmnI GCTCC 1 cut(s) 640
Lsp1109I GCAGC 2 cut(s) 100, 852
MaeI CTAG 2 cut(s) 459, 584
MaeIII GTNAC 2 cut(s) 785, 922
MalI GATC 5 cut(s) 48, 446, 480, 688, 881
MboI GATC 5 cut(s) 46, 444, 478, 686, 879
MboII GAAGA 5 cut(s) 46, 162, 405, 708, 711
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 7 cut(s) 127, 286, 486, 768, 846, 875, 950
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 7 cut(s) 14, 37, 322, 631, 745, 745, 847
MseI TTAA 3 cut(s) 158, 318, 557
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 846
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 97, 511, 539
NdeII GATC 5 cut(s) 46, 444, 478, 686, 879
NlaIII CATG 5 cut(s) 76, 100, 211, 898, 1012
NlaIV GGNNCC 2 cut(s) 48, 549
NmuCI GTSAC 1 cut(s) 785
NspI RCATGY 1 cut(s) 100
PaeI GCATGC 1 cut(s) 100
PagI TCATGA 1 cut(s) 894
PfeI GAWTC 4 cut(s) 590, 665, 780, 982
PflMI CCANNNNNTGG 1 cut(s) 231
PkrI GCNGC 3 cut(s) 115, 504, 867
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 48, 549
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 3 cut(s) 158, 318, 557
SatI GCNGC 3 cut(s) 114, 503, 866
Sau3AI GATC 5 cut(s) 46, 444, 478, 686, 879
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 614
SmlI CTYRAG 3 cut(s) 387, 474, 635
SmoI CTYRAG 3 cut(s) 387, 474, 635
SphI GCATGC 1 cut(s) 100
Sse9I AATT 7 cut(s) 127, 286, 486, 768, 846, 875, 950
SsiI CCGC 1 cut(s) 502
SspMI CTAG 2 cut(s) 459, 584
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 550
TaaI ACNGT 3 cut(s) 138, 525, 815
TaqI TCGA 3 cut(s) 14, 84, 242
TasI AATT 7 cut(s) 127, 286, 486, 768, 846, 875, 950
TauI GCSGC 1 cut(s) 505
TfiI GAWTC 4 cut(s) 590, 665, 780, 982
Tru1I TTAA 3 cut(s) 158, 318, 557
Tru9I TTAA 3 cut(s) 158, 318, 557
TscAI CASTG 7 cut(s) 71, 149, 745, 765, 818, 895, 969
TseFI GTSAC 1 cut(s) 785
TseI GCWGC 2 cut(s) 113, 865
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 8 cut(s) 89, 224, 279, 384, 405, 517, 735, 997
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 7 cut(s) 71, 149, 745, 765, 818, 895, 969
Van91I CCANNNNNTGG 1 cut(s) 231
XapI RAATTY 2 cut(s) 127, 950
XceI RCATGY 1 cut(s) 100
XspI CTAG 2 cut(s) 459, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.