Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Forward (+)

22033581 .. 22036082

Gene Structure 2502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G212000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGACATGATTTCATCAGCAAAATGGGTATCTGATTTGGAGATGGAGGATCCTACTTTTATCCATCAATATGAAATGAACTCTCTGGACTACTCACTTGATGATCTCAATTTCCAGTCTTTTTCTTCTGAGAGCTACTCGTCTTACCCGAATTTCACCCCTAAAGCCACACACAACTTCAGCAACGCATCCATCGAAACTCCTCAACAGGCCGGCACTCACGAAAGGCCAGCAAAACAGCCTAAGAACCACACTACTTGGAACCCTTGCACCACTGACCACACAATTATGGCCAAGGCTGCTTCTTCTTCCTCCTCACATCTGATTTCTTTTGATAACTCCAACTCATCACCCCCAACCAGTTCTCAGCAGTTCTATGGTACTCTAGACAACACAATGAAGCCAAAGAATGAGGTGGAATATTCCAATGGGAAATTGAACCTTACAACTTTGATTTCCCAAGGTTCCTATGACCCCCAAACTTGTTCACCGAAACATGGACAAGGGATCAAGAGGGCAGCTACAGTCACTAGGAGCCCTTTACATGCTCAAGATCATGTTCTGGCTGAGAGAAAACGCCGAGAAAAACTCAGCCAGCGGTTCATAGCTCTGTCTGCCTTAGTTCCAGGCTTAAAGAAGATGGACAAAGCTTCAGTCCTTGGAGATGCGATCAAGTACGTGAAGCATCTTCAAGAACGTACGAAGATGCTGGAGGAAAAAGCGGTTAAGAAAACAGTAGAAGCAGTGGTGTTTGTGAAGAGGACTCAGTACTCTGCAGATGATGATATCTCTTCATCGGATGAGAACTTTGAGAGCTCCTCCGACCAGCCACTCCCCGAAATTGAAGCAAGGGTTTCAGACAAGGAGGTTCTCATACGAGTCCATTGTGAGAAAACCAAAGGATGTTTGGCAAAAATACTAAGCGAAATAGAGAGCCTTGATCTCACCATTGTTAACAGCAGTGTCTTGCCCTTTGGCAATTCAACTCTTGATATCACTGTAATTGCTCAGATGGACGCTGAATTCAGCATGACAGTGAAGGATCTTGTGAAAAACCTGAGACAGTCATTGCTCAAGTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

362

Amino Acids

40.31

Weight (kDa)

6.14

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	598, 722
AclWI	GGATC	4 cut(s)	44, 57, 515, 1050
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	151, 1022
AcuI	CTGAAG	2 cut(s)	163, 636
AfaI	GTAC	4 cut(s)	382, 677, 700, 770
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	439, 692, 845, 984
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	5 cut(s)	135, 521, 608, 650, 816
AluI	AGCT	5 cut(s)	135, 521, 608, 650, 816
Alw21I	GWGCWC	1 cut(s)	818
Alw26I	GTCTC	1 cut(s)	1054
AlwI	GGATC	4 cut(s)	44, 57, 515, 1050
AoxI	GGCC	3 cut(s)	210, 227, 291
ApeKI	GCWGC	2 cut(s)	299, 518
ApoI	RAATTY	2 cut(s)	151, 1022
ArsI	GACNNNNNNTTYG	2 cut(s)	639, 671
AsuHPI	GGTGA	4 cut(s)	148, 342, 480, 937
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	539, 818
Bbv12I	GWGCWC	1 cut(s)	818
BbvI	GCAGC	2 cut(s)	286, 530
BccI	CCATC	5 cut(s)	37, 72, 200, 634, 1006
BciT130I	CCWGG	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	1054
BfaI	CTAG	2 cut(s)	386, 531
BfmI	CTRYAG	2 cut(s)	522, 774
BisI	GCNGC	2 cut(s)	300, 519
BlsI	GCNGC	2 cut(s)	301, 520
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	1 cut(s)	627
BmiI	GGNNCC	4 cut(s)	51, 263, 466, 536
BmrFI	CCNGG	1 cut(s)	627
BmsI	GCATC	4 cut(s)	197, 655, 694, 696
BplI	GAGNNNNNCTC	6 cut(s)	122, 154, 573, 605, 803, 835
BpmI	CTGGAG	1 cut(s)	731
BpuEI	CTTGAG	2 cut(s)	534, 1058
BsaAI	YACGTR	1 cut(s)	679
BsaJI	CCNNGG	3 cut(s)	294, 460, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	2 cut(s)	115, 360
Bse3DI	GCAATG	1 cut(s)	1067
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	3 cut(s)	294, 460, 658
BseGI	GGATG	3 cut(s)	188, 805, 908
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	1067
BseMII	CTCAG	7 cut(s)	120, 380, 558, 604, 779, 1022, 1049
BseNI	ACTGG	2 cut(s)	115, 360
BseRI	GAGGAG	3 cut(s)	192, 304, 808
BseXI	GCAGC	2 cut(s)	286, 530
BshFI	GGCC	3 cut(s)	212, 229, 293
BsiHKAI	GWGCWC	1 cut(s)	818
BsiSI	CCGG	1 cut(s)	213
BsiWI	CGTACG	1 cut(s)	698
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	1054
BsnI	GGCC	3 cut(s)	212, 229, 293
Bsp1286I	GDGCHC	2 cut(s)	539, 818
Bsp143I	GATC	7 cut(s)	49, 103, 507, 553, 669, 940, 1042
BspACI	CCGC	2 cut(s)	598, 722
BspANI	GGCC	3 cut(s)	212, 229, 293
BspCNI	CTCAG	7 cut(s)	121, 379, 559, 603, 778, 1021, 1050
BspLI	GGNNCC	4 cut(s)	51, 263, 466, 536
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	4 cut(s)	44, 57, 515, 1050
BsrDI	GCAATG	1 cut(s)	1067
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	115, 360
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	294, 460, 658
BssMI	GATC	7 cut(s)	49, 103, 507, 553, 669, 940, 1042
BssT1I	CCWWGG	3 cut(s)	294, 460, 658
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	5 cut(s)	526, 736, 1000, 1036, 1065
Bst6I	CTCTTC	2 cut(s)	752, 796
BstBAI	YACGTR	1 cut(s)	679
BstC8I	GCNNGC	3 cut(s)	214, 231, 596
BstF5I	GGATG	3 cut(s)	188, 805, 908
BstKTI	GATC	7 cut(s)	52, 106, 510, 556, 672, 943, 1045
BstMAI	GTCTC	1 cut(s)	1054
BstMBI	GATC	7 cut(s)	49, 103, 507, 553, 669, 940, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 614
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	625
BstSFI	CTRYAG	2 cut(s)	522, 774
BstV1I	GCAGC	2 cut(s)	286, 530
BstX2I	RGATCY	2 cut(s)	49, 1042
BstYI	RGATCY	2 cut(s)	49, 1042
BsuRI	GGCC	3 cut(s)	212, 229, 293
BtsCI	GGATG	3 cut(s)	188, 805, 908
BtsI	GCAGTG	2 cut(s)	750, 967
BtsIMutI	CAGTG	5 cut(s)	273, 750, 967, 996, 1041
Cac8I	GCNNGC	3 cut(s)	214, 231, 596
Cfr10I	RCCGGY	1 cut(s)	212
CseI	GACGC	1 cut(s)	1025
Csp6I	GTAC	4 cut(s)	381, 676, 699, 769
CspCI	CAANNNNNGTGG	2 cut(s)	239, 274
CviAII	CATG	5 cut(s)	7, 497, 545, 557, 1030
CviQI	GTAC	4 cut(s)	381, 676, 699, 769
DpnI	GATC	7 cut(s)	51, 105, 509, 555, 671, 942, 1044
DpnII	GATC	7 cut(s)	49, 103, 507, 553, 669, 940, 1042
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	752, 796
EarI	CTCTTC	2 cut(s)	752, 796
Ecl136II	GAGCTC	1 cut(s)	816
Eco130I	CCWWGG	3 cut(s)	294, 460, 658
Eco24I	GRGCYC	2 cut(s)	539, 818
Eco32I	GATATC	2 cut(s)	787, 994
Eco53kI	GAGCTC	1 cut(s)	816
Eco57I	CTGAAG	2 cut(s)	163, 636
EcoICRI	GAGCTC	1 cut(s)	816
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	1 cut(s)	625
EcoRV	GATATC	2 cut(s)	787, 994
EcoT14I	CCWWGG	3 cut(s)	294, 460, 658
EcoT38I	GRGCYC	2 cut(s)	539, 818
ErhI	CCWWGG	3 cut(s)	294, 460, 658
FaeI	CATG	5 cut(s)	10, 500, 548, 560, 1033
FatI	CATG	5 cut(s)	6, 496, 544, 556, 1029
Fnu4HI	GCNGC	2 cut(s)	300, 519
FokI	GGATG	3 cut(s)	175, 812, 915
FriOI	GRGCYC	2 cut(s)	539, 818
Fsp4HI	GCNGC	2 cut(s)	300, 519
FspBI	CTAG	2 cut(s)	386, 531
GluI	GCNGC	2 cut(s)	300, 519
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	3 cut(s)	212, 229, 293
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	1025
Hin1II	CATG	5 cut(s)	10, 500, 548, 560, 1033
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	2 cut(s)	763, 879
HpaI	GTTAAC	1 cut(s)	955
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	4 cut(s)	148, 342, 480, 937
Hpy166II	GTNNAC	2 cut(s)	488, 955
Hpy188I	TCNGA	7 cut(s)	34, 130, 324, 799, 823, 859, 1011
Hpy188III	TCNNGA	7 cut(s)	86, 221, 386, 511, 551, 692, 989
Hpy8I	GTNNAC	2 cut(s)	488, 955
HpyAV	CCTTC	1 cut(s)	1033
HpyCH4III	ACNGT	5 cut(s)	526, 736, 1000, 1036, 1065
HpyCH4IV	ACGT	2 cut(s)	678, 697
HpyCH4V	TGCA	2 cut(s)	270, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 614
HpySE526I	ACGT	2 cut(s)	678, 697
Hsp92II	CATG	5 cut(s)	10, 500, 548, 560, 1033
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
KspAI	GTTAAC	1 cut(s)	955
Kzo9I	GATC	7 cut(s)	49, 103, 507, 553, 669, 940, 1042
LmnI	GCTCC	2 cut(s)	534, 821
Lsp1109I	GCAGC	2 cut(s)	286, 530
LweI	GCATC	4 cut(s)	197, 655, 694, 696
MaeI	CTAG	2 cut(s)	386, 531
MaeII	ACGT	2 cut(s)	678, 697
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	7 cut(s)	51, 105, 509, 555, 671, 942, 1044
MboI	GATC	7 cut(s)	49, 103, 507, 553, 669, 940, 1042
MboII	GAAGA	8 cut(s)	117, 297, 300, 649, 680, 715, 769, 783
MflI	RGATCY	2 cut(s)	49, 1042
MhlI	GDGCHC	2 cut(s)	539, 818
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	8 cut(s)	109, 151, 285, 434, 840, 979, 1002, 1022
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	2 cut(s)	757, 888
MmeI	TCCRAC	2 cut(s)	366, 846
Mox20I	TGGCCA	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	3 cut(s)	632, 726, 954
MslI	CAYNNNNRTG	3 cut(s)	69, 287, 1034
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	299, 614
NaeI	GCCGGC	1 cut(s)	214
NdeII	GATC	7 cut(s)	49, 103, 507, 553, 669, 940, 1042
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	5 cut(s)	10, 500, 548, 560, 1033
NlaIV	GGNNCC	4 cut(s)	51, 263, 466, 536
NmeAIII	GCCGAG	1 cut(s)	605
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 192
PdiI	GCCGGC	1 cut(s)	214
Pfl23II	CGTACG	1 cut(s)	698
PkrI	GCNGC	2 cut(s)	301, 520
PleI	GAGTC	2 cut(s)	757, 887
PpsI	GAGTC	2 cut(s)	757, 887
Ppu21I	YACGTR	1 cut(s)	679
Psp124BI	GAGCTC	1 cut(s)	818
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspLI	CGTACG	1 cut(s)	698
PspN4I	GGNNCC	4 cut(s)	51, 263, 466, 536
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	2 cut(s)	49, 1042
RsaI	GTAC	4 cut(s)	382, 677, 700, 770
RsaNI	GTAC	4 cut(s)	381, 676, 699, 769
RseI	CAYNNNNRTG	3 cut(s)	69, 287, 1034
SacI	GAGCTC	1 cut(s)	818
SaqAI	TTAA	3 cut(s)	632, 726, 954
SatI	GCNGC	2 cut(s)	300, 519
Sau3AI	GATC	7 cut(s)	49, 103, 507, 553, 669, 940, 1042
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	2 cut(s)	757, 888
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	2 cut(s)	539, 818
SfaNI	GCATC	4 cut(s)	197, 655, 694, 696
SfcI	CTRYAG	2 cut(s)	522, 774
SmiMI	CAYNNNNRTG	3 cut(s)	69, 287, 1034
SmlI	CTYRAG	2 cut(s)	549, 1073
SmoI	CTYRAG	2 cut(s)	549, 1073
Sse9I	AATT	8 cut(s)	109, 151, 285, 434, 840, 979, 1002, 1022
SsiI	CCGC	2 cut(s)	598, 722
SspI	AATATT	1 cut(s)	422
SspMI	CTAG	2 cut(s)	386, 531
SstI	GAGCTC	1 cut(s)	818
StyD4I	CCNGG	1 cut(s)	625
StyI	CCWWGG	3 cut(s)	294, 460, 658
TaaI	ACNGT	5 cut(s)	526, 736, 1000, 1036, 1065
TaiI	ACGT	2 cut(s)	681, 700
TaqI	TCGA	1 cut(s)	195
TasI	AATT	8 cut(s)	109, 151, 285, 434, 840, 979, 1002, 1022
TatI	WGTACW	1 cut(s)	768
Tru1I	TTAA	3 cut(s)	632, 726, 954
Tru9I	TTAA	3 cut(s)	632, 726, 954
TscAI	CASTG	5 cut(s)	280, 750, 967, 1003, 1041
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	2 cut(s)	299, 518
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	5 cut(s)	87, 92, 413, 592, 783
TspRI	CASTG	5 cut(s)	280, 750, 967, 1003, 1041
XapI	RAATTY	2 cut(s)	151, 1022
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	904
XspI	CTAG	2 cut(s)	386, 531
ZrmI	AGTACT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.