Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Forward (+)

14862135 .. 14864137

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1047200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGACATATCATCAGCCAAATGGTTTTCTGAATTGGGAATGGACTACAGTTTCATTCCTCAATGTCACTTGAACAGTCTAGATGACGGGTTTAATGCACATGATATTGGCACTGCCCTTGGGGAGAATTTCAAACAATCTTTCTCTTCCGAGAGCTATTCCTCTTACTCAACTTTGACAACCAAAAACACCCCCACCACGACGACCATTGCATCAAGTGGTGGTTCATCCATTAATGAGACTTCTCATGGCACCAGCTTTGAGAGGCCAGCCAAACTGCTCAAGACTAGCAGCTGGAACTCTATCATCACAGAAAATGTTTCACCAAAACCTTGCTCTTCCTCCTCCCAGATTCTTTCTTTTGAGAACTTGAACTCGCCACTGCCTTCCAAGCCTCAAAAGTTTTGTAATAAATTTGAGCCTGCGTTGAAGCCAAAGGATGAGGCACCTTCCCAAATTAATATGCGGTTTTCACATGCTCAAGACTATGAAGCAAAAGGCAGTAGCCAGGGCACTAAGAGGCCTTGCCCAACAAGTAGAACACCACCTTCACATGCTCAAGACCACATAATGGCTGAAAGAAAGCGGAGAGAAAAGCTCAGCCAGCGGTTCATAGCTCTTTCTGCGATCGTTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGATGCTATAAAGCATGTGAAGGAGCTTCAAGAAAGGGTGAAAGTGCTTGAGGAACGATCCAAGAAAAGAACTGTGGAATCCGTGGTATTTGTGAAAAAGTCTCAACTCTCCGCTGATGATGACACCTCTTCATGTGATGAAAACTTTGATGGTTGCGGCCCCGACGAAGCTGCACTCCCAGAAATTGAAGCAAGAGTTTCAGAAAAGGATGTATTGATTCGAATCCACTGCGAGAAACAGAAAGGAGTTGTGGTGAAAATACTAAGCGAAATTGAAAAGCTTCAATTATCTGTGGTTAATAGCAGCGTCTTGCCATTTGGGGCCTCCACTCTAGACATAACCATTATGTCTCAGATGGATGATGGATTCAATATGACAGTGAAGGATCTAGCAAGAAAGTTGCGAGGGGCTCTGTTGACGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

367

Amino Acids

40.35

Weight (kDa)

7.6

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	189 - 234	1e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	289 - 358	2.6e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	251, 445
AccB7I	CCANNNNNTGG	1 cut(s)	571
AciI	CCGC	5 cut(s)	466, 586, 607, 783, 828
AclWI	GGATC	2 cut(s)	723, 1065
AcsI	RAATTY	2 cut(s)	127, 413
AfiI	CCNNNNNNNGG	1 cut(s)	571
AgsI	TTSAA	9 cut(s)	73, 133, 373, 430, 701, 860, 947, 956, 1042
AjnI	CCWGG	2 cut(s)	507, 634
AluBI	AGCT	9 cut(s)	156, 258, 294, 598, 617, 659, 697, 842, 952
AluI	AGCT	9 cut(s)	156, 258, 294, 598, 617, 659, 697, 842, 952
Alw26I	GTCTC	3 cut(s)	233, 777, 1026
AlwI	GGATC	2 cut(s)	723, 1065
AoxI	GGCC	5 cut(s)	266, 521, 637, 829, 993
ApeKI	GCWGC	3 cut(s)	291, 842, 975
ApoI	RAATTY	2 cut(s)	127, 413
AseI	ATTAAT	2 cut(s)	234, 459
Asp700I	GAANNNNTTC	1 cut(s)	951
AspS9I	GGNCC	2 cut(s)	830, 993
AsuHPI	GGTGA	3 cut(s)	315, 721, 937
AsuII	TTCGAA	1 cut(s)	892
BaeGI	GKGCMC	1 cut(s)	515
BanI	GGYRCC	2 cut(s)	251, 445
BanII	GRGCYC	1 cut(s)	1084
BbvI	GCAGC	3 cut(s)	303, 829, 987
BccI	CCATC	4 cut(s)	643, 815, 1021, 1028
BcgI	CGANNNNNNTGC	4 cut(s)	824, 858, 882, 916
BciT130I	CCWGG	2 cut(s)	509, 636
BcoDI	GTCTC	3 cut(s)	233, 777, 1026
BfaI	CTAG	4 cut(s)	80, 288, 1004, 1061
BfmI	CTRYAG	1 cut(s)	46
BisI	GCNGC	4 cut(s)	292, 829, 843, 976
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	4 cut(s)	293, 830, 844, 977
Bme1390I	CCNGG	2 cut(s)	509, 636
BmgT120I	GGNCC	2 cut(s)	830, 993
BmiI	GGNNCC	4 cut(s)	253, 447, 832, 994
BmrFI	CCNGG	2 cut(s)	509, 636
BmsI	GCATC	2 cut(s)	221, 664
BplI	GAGNNNNNCTC	2 cut(s)	582, 614
Bpu1102I	GCTNAGC	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	892
BpuEI	CTTGAG	4 cut(s)	266, 465, 543, 740
BsaBI	GATNNNNATC	1 cut(s)	893
BsaJI	CCNNGG	3 cut(s)	118, 508, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse3DI	GCAATG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	893
BseBI	CCWGG	2 cut(s)	509, 636
BseDI	CCNNGG	3 cut(s)	118, 508, 753
BseGI	GGATG	4 cut(s)	227, 445, 886, 1036
BseJI	GATNNNNATC	1 cut(s)	893
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	613, 1037
BseRI	GAGGAG	1 cut(s)	334
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	303, 829, 987
BsgI	GTGCAG	1 cut(s)	828
Bsh1285I	CGRYCG	1 cut(s)	630
BshFI	GGCC	5 cut(s)	268, 523, 639, 831, 995
BshNI	GGYRCC	2 cut(s)	251, 445
BsiEI	CGRYCG	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	3 cut(s)	233, 777, 1026
BsnI	GGCC	5 cut(s)	268, 523, 639, 831, 995
Bsp119I	TTCGAA	1 cut(s)	892
Bsp1286I	GDGCHC	2 cut(s)	515, 1084
Bsp143I	GATC	3 cut(s)	627, 728, 1057
Bsp1720I	GCTNAGC	1 cut(s)	599
BspACI	CCGC	5 cut(s)	466, 586, 607, 783, 828
BspANI	GGCC	5 cut(s)	268, 523, 639, 831, 995
BspCNI	CTCAG	2 cut(s)	612, 1036
BspLI	GGNNCC	4 cut(s)	253, 447, 832, 994
BspPI	GGATC	2 cut(s)	723, 1065
BspQI	GCTCTTC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	892
BspT107I	GGYRCC	2 cut(s)	251, 445
BsrDI	GCAATG	1 cut(s)	207
BssECI	CCNNGG	3 cut(s)	118, 508, 753
BssMI	GATC	3 cut(s)	627, 728, 1057
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	509, 636
Bst4CI	ACNGT	4 cut(s)	50, 77, 745, 1051
Bst6I	CTCTTC	3 cut(s)	151, 343, 805
BstBI	TTCGAA	1 cut(s)	892
BstC8I	GCNNGC	3 cut(s)	270, 423, 605
BstDEI	CTNAG	4 cut(s)	516, 599, 935, 1023
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	4 cut(s)	227, 445, 886, 1036
BstKTI	GATC	3 cut(s)	630, 731, 1060
BstMAI	GTCTC	3 cut(s)	233, 777, 1026
BstMBI	GATC	3 cut(s)	627, 728, 1057
BstMCI	CGRYCG	1 cut(s)	630
BstMWI	GCNNNNNNNGC	3 cut(s)	391, 604, 623
BstNI	CCWGG	2 cut(s)	509, 636
BstNSI	RCATGY	3 cut(s)	479, 557, 689
BstSCI	CCNGG	2 cut(s)	507, 634
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	515
BstV1I	GCAGC	3 cut(s)	303, 829, 987
BstX2I	RGATCY	1 cut(s)	1057
BstYI	RGATCY	1 cut(s)	1057
BsuRI	GGCC	5 cut(s)	268, 523, 639, 831, 995
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	4 cut(s)	227, 445, 886, 1036
BtsI	GCAGTG	3 cut(s)	111, 380, 898
BtsIMutI	CAGTG	4 cut(s)	111, 380, 898, 1056
Cac8I	GCNNGC	3 cut(s)	270, 423, 605
Cfr13I	GGNCC	2 cut(s)	830, 993
CseI	GACGC	1 cut(s)	967
CviAII	CATG	7 cut(s)	101, 248, 476, 554, 686, 804, 1096
DdeI	CTNAG	4 cut(s)	516, 599, 935, 1023
DpnI	GATC	3 cut(s)	629, 730, 1059
DpnII	GATC	3 cut(s)	627, 728, 1057
Eam1104I	CTCTTC	3 cut(s)	151, 343, 805
EarI	CTCTTC	3 cut(s)	151, 343, 805
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	1084
EcoO109I	RGGNCCY	1 cut(s)	993
EcoRII	CCWGG	2 cut(s)	507, 634
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	1084
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	7 cut(s)	104, 251, 479, 557, 689, 807, 1099
FatI	CATG	7 cut(s)	100, 247, 475, 553, 685, 803, 1095
Fnu4HI	GCNGC	4 cut(s)	292, 829, 843, 976
FokI	GGATG	4 cut(s)	214, 452, 893, 1043
FriOI	GRGCYC	1 cut(s)	1084
Fsp4HI	GCNGC	4 cut(s)	292, 829, 843, 976
FspBI	CTAG	4 cut(s)	80, 288, 1004, 1061
GluI	GCNGC	4 cut(s)	292, 829, 843, 976
HaeIII	GGCC	5 cut(s)	268, 523, 639, 831, 995
HgaI	GACGC	1 cut(s)	967
Hin1II	CATG	7 cut(s)	104, 251, 479, 557, 689, 807, 1099
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HindIII	AAGCTT	2 cut(s)	657, 950
HinfI	GANTC	5 cut(s)	352, 749, 889, 894, 1038
HphI	GGTGA	3 cut(s)	315, 721, 937
Hpy166II	GTNNAC	1 cut(s)	1089
Hpy188I	TCNGA	4 cut(s)	31, 151, 874, 1026
Hpy188III	TCNNGA	6 cut(s)	80, 283, 482, 560, 701, 1004
Hpy8I	GTNNAC	1 cut(s)	1089
Hpy99I	CGWCG	2 cut(s)	205, 839
HpyAV	CCTTC	5 cut(s)	396, 459, 558, 685, 1048
HpyCH4III	ACNGT	4 cut(s)	50, 77, 745, 1051
HpyCH4IV	ACGT	1 cut(s)	1091
HpyCH4V	TGCA	3 cut(s)	98, 212, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	391, 604, 623
HpyF3I	CTNAG	4 cut(s)	516, 599, 935, 1023
HpySE526I	ACGT	1 cut(s)	1091
Hsp92II	CATG	7 cut(s)	104, 251, 479, 557, 689, 807, 1099
Kzo9I	GATC	3 cut(s)	627, 728, 1057
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	3 cut(s)	303, 829, 987
LweI	GCATC	2 cut(s)	221, 664
MaeI	CTAG	4 cut(s)	80, 288, 1004, 1061
MaeII	ACGT	1 cut(s)	1091
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	3 cut(s)	629, 730, 1059
MboI	GATC	3 cut(s)	627, 728, 1057
MboII	GAAGA	4 cut(s)	138, 330, 658, 792
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	2 cut(s)	515, 1084
MluCI	AATT	7 cut(s)	32, 127, 413, 456, 855, 942, 956
MroXI	GAANNNNTTC	1 cut(s)	951
MseI	TTAA	4 cut(s)	93, 234, 459, 969
MspA1I	CMGCKG	3 cut(s)	294, 607, 785
MspR9I	CCNGG	2 cut(s)	509, 636
MvaI	CCWGG	2 cut(s)	509, 636
MwoI	GCNNNNNNNGC	3 cut(s)	391, 604, 623
NdeII	GATC	3 cut(s)	627, 728, 1057
NlaIII	CATG	7 cut(s)	104, 251, 479, 557, 689, 807, 1099
NlaIV	GGNNCC	4 cut(s)	253, 447, 832, 994
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	3 cut(s)	479, 557, 689
NspV	TTCGAA	1 cut(s)	892
PceI	AGGCCT	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	951
PfeI	GAWTC	5 cut(s)	352, 749, 889, 894, 1038
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	293, 830, 844, 977
Ple19I	CGATCG	1 cut(s)	630
PshBI	ATTAAT	2 cut(s)	234, 459
Psp6I	CCWGG	2 cut(s)	507, 634
PspGI	CCWGG	2 cut(s)	507, 634
PspN4I	GGNNCC	4 cut(s)	253, 447, 832, 994
PspPI	GGNCC	2 cut(s)	830, 993
PsuI	RGATCY	1 cut(s)	1057
PvuI	CGATCG	1 cut(s)	630
PvuII	CAGCTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	4 cut(s)	93, 234, 459, 969
SatI	GCNGC	4 cut(s)	292, 829, 843, 976
Sau3AI	GATC	3 cut(s)	627, 728, 1057
Sau96I	GGNCC	2 cut(s)	830, 993
ScrFI	CCNGG	2 cut(s)	509, 636
SduI	GDGCHC	2 cut(s)	515, 1084
SfaNI	GCATC	2 cut(s)	221, 664
SfcI	CTRYAG	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	892
SmlI	CTYRAG	4 cut(s)	281, 480, 558, 719
SmoI	CTYRAG	4 cut(s)	281, 480, 558, 719
Sse9I	AATT	7 cut(s)	32, 127, 413, 456, 855, 942, 956
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	5 cut(s)	466, 586, 607, 783, 828
SspMI	CTAG	4 cut(s)	80, 288, 1004, 1061
StuI	AGGCCT	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	507, 634
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	4 cut(s)	50, 77, 745, 1051
TaiI	ACGT	1 cut(s)	1094
TaqI	TCGA	1 cut(s)	892
TasI	AATT	7 cut(s)	32, 127, 413, 456, 855, 942, 956
TauI	GCSGC	1 cut(s)	831
TfiI	GAWTC	5 cut(s)	352, 749, 889, 894, 1038
Tru1I	TTAA	4 cut(s)	93, 234, 459, 969
Tru9I	TTAA	4 cut(s)	93, 234, 459, 969
TscAI	CASTG	4 cut(s)	118, 387, 905, 1056
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	3 cut(s)	291, 842, 975
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	7 cut(s)	43, 216, 504, 601, 792, 825, 1084
TspGWI	ACGGA	1 cut(s)	742
TspRI	CASTG	4 cut(s)	118, 387, 905, 1056
Van91I	CCANNNNNTGG	1 cut(s)	571
VspI	ATTAAT	2 cut(s)	234, 459
XapI	RAATTY	2 cut(s)	127, 413
XbaI	TCTAGA	2 cut(s)	79, 1003
XceI	RCATGY	3 cut(s)	479, 557, 689
XmnI	GAANNNNTTC	1 cut(s)	951
XspI	CTAG	4 cut(s)	80, 288, 1004, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.