Rh6AG034000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000792
Physical Location & Seq
Forward (+)
4319113 .. 4321720
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG034000.1

Sequence Viewer

Length: 1014 bp
ATGGAGATTTCGTCGATAAGAGGACTAACTGAACTGGGAATGGAGGATCCCTTCTTCGTCAACCAGTGGCACATGAACTCTCTCGATGAGCTCAGCATGCTACCATTATCAGCTGCCTTTGGAGAGAATTTGCAACAGTCTCACTGCCACCCGATTTTAAACCATAAATCTTCTACCAATACGTCTCTGAGTTCCATTGATAGACCCATGAAACAGTTCAAACCCAACAACTGGAGTCCATCGAACCACCAGTTTGCTTCCCTGCCAAACCTTCTCTCCTTTGTCAATTCATACAACACAAACCAAGTGGGGGTTGTTCAGCCTAAGGAGGAGACGGCAGTATGTTCAAAGAACATCAACCATTTCCCTTCTGATATATTGGTTTCTCAAGGTTCATTTGGCAACCAAAACTCTTCATTGAAGGCCAGTCAGGGAACAAACAGGATCAGCACAAACACTAGGCTTTCGCAAACTCAAGATCACATAATTGCAGAAAGGAAGCGGCGAGAGAAGCTTAGTCAACGGTTCATTGCTTTATCTGCAATGGTTCCTGGCCTAAAAAAGACGGACAAGGCTTCTGTTCTAGGAGATTCTATCAAGTACATCAAGCAACTACAGGAGAAGGTAAAGACACTTGAGGAGCAGACGAGAGTGAAAAAGATGGAATCAGTCGTCTCTGTGAAAAGATCACAGCTCATTGCAAATGATGATAACTCTTCTTCGGATGATAACAACTCCAGTGTTTCATTTGAGGAGACACTGCCAGAAATTGAAGCAAGATTCTGTGACAACAATGTCATGATAAGAGTTCACTGTGAGAAAAGAAAAGGAGTTGTTGAAAAAACAATTGCTGAGGTTGAGAAGCTGCAACTAAAATTGATCAATAGCAGTGTCATGACATTTGGTAGTTCTGTTCTTGATGTAACCATTGTTGCTCAGATGGAAGTGGAATTCTGTCTCTCAGTGAAGGATGTCGTCAAGAATCTACGCTCCGCTTTCGACTTGTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

337

Amino Acids

37.82

Weight (kDa)

7.67

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 160 - 206 6.2e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 794
AccB7I CCANNNNNTGG 1 cut(s) 231
AciI CCGC 2 cut(s) 502, 993
AclWI GGATC 3 cut(s) 41, 54, 452
AcsI RAATTY 2 cut(s) 127, 950
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 2 cut(s) 231, 310
AgsI TTSAA 5 cut(s) 220, 348, 421, 773, 839
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 5 cut(s) 91, 113, 514, 694, 865
AluI AGCT 5 cut(s) 91, 113, 514, 694, 865
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 6 cut(s) 144, 189, 326, 679, 749, 962
AlwI GGATC 3 cut(s) 41, 54, 452
AoxI GGCC 2 cut(s) 423, 553
ApeKI GCWGC 2 cut(s) 113, 865
ApoI RAATTY 2 cut(s) 127, 950
Asp700I GAANNNNTTC 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 324
BamHI GGATCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 2 cut(s) 100, 852
BccI CCATC 3 cut(s) 247, 655, 934
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 6 cut(s) 144, 189, 326, 679, 749, 962
BfaI CTAG 2 cut(s) 459, 584
BfmI CTRYAG 1 cut(s) 614
BisI GCNGC 3 cut(s) 114, 503, 866
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 3 cut(s) 115, 504, 867
Bme1390I CCNGG 1 cut(s) 552
BmiI GGNNCC 2 cut(s) 48, 549
BmrFI CCNGG 1 cut(s) 552
BmrI ACTGGG 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 44
BpmI CTGGAG 2 cut(s) 253, 721
Bpu10I CCTNAGC 1 cut(s) 852
Bpu1102I GCTNAGC 1 cut(s) 92
BpuEI CTTGAG 3 cut(s) 372, 459, 656
BsaXI ACNNNNNCTCC 3 cut(s) 26, 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 310
Bse1I ACTGG 6 cut(s) 39, 64, 236, 250, 426, 738
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 3 cut(s) 528, 549, 696
BseBI CCWGG 1 cut(s) 552
BseGI GGATG 2 cut(s) 730, 976
BseLI CCNNNNNNNGG 2 cut(s) 231, 310
BseMI GCAATG 3 cut(s) 528, 549, 696
BseMII CTCAG 5 cut(s) 106, 179, 843, 950, 975
BseNI ACTGG 6 cut(s) 39, 64, 236, 250, 426, 738
BseRI GAGGAG 3 cut(s) 344, 653, 767
BseXI GCAGC 2 cut(s) 100, 852
BshFI GGCC 2 cut(s) 425, 555
BsiHKAI GWGCWC 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 231, 310
BsmAI GTCTC 6 cut(s) 144, 189, 326, 679, 749, 962
BsmBI CGTCTC 3 cut(s) 189, 326, 679
BsnI GGCC 2 cut(s) 425, 555
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 5 cut(s) 46, 444, 478, 686, 879
Bsp1720I GCTNAGC 1 cut(s) 92
BspACI CCGC 2 cut(s) 502, 993
BspANI GGCC 2 cut(s) 425, 555
BspCNI CTCAG 5 cut(s) 105, 180, 844, 949, 974
BspHI TCATGA 2 cut(s) 798, 894
BspLI GGNNCC 2 cut(s) 48, 549
BspPI GGATC 3 cut(s) 41, 54, 452
BsrDI GCAATG 3 cut(s) 528, 549, 696
BsrI ACTGG 6 cut(s) 39, 64, 236, 250, 426, 738
BssMI GATC 5 cut(s) 46, 444, 478, 686, 879
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 4 cut(s) 138, 216, 525, 815
Bst6I CTCTTC 2 cut(s) 418, 721
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 7 cut(s) 92, 188, 324, 515, 852, 936, 961
BstF5I GGATG 2 cut(s) 730, 976
BstKTI GATC 5 cut(s) 49, 447, 481, 689, 882
BstMAI GTCTC 6 cut(s) 144, 189, 326, 679, 749, 962
BstMBI GATC 5 cut(s) 46, 444, 478, 686, 879
BstMWI GCNNNNNNNGC 3 cut(s) 97, 511, 539
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 614
BstV1I GCAGC 2 cut(s) 100, 852
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 425, 555
BtsCI GGATG 2 cut(s) 730, 976
BtsI GCAGTG 3 cut(s) 142, 758, 895
BtsIMutI CAGTG 7 cut(s) 71, 142, 745, 758, 811, 895, 969
Cac8I GCNNGC 1 cut(s) 98
CciI TCATGA 2 cut(s) 798, 894
Csp6I GTAC 1 cut(s) 601
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 6 cut(s) 73, 97, 208, 799, 895, 1009
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 7 cut(s) 92, 188, 324, 515, 852, 936, 961
DpnI GATC 5 cut(s) 48, 446, 480, 688, 881
DpnII GATC 5 cut(s) 46, 444, 478, 686, 879
DraI TTTAAA 1 cut(s) 159
DrdI GACNNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 794
Eam1104I CTCTTC 2 cut(s) 418, 721
EarI CTCTTC 2 cut(s) 418, 721
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 950
EcoRII CCWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 3 cut(s) 189, 326, 679
FaeI CATG 6 cut(s) 76, 100, 211, 802, 898, 1012
FatI CATG 6 cut(s) 72, 96, 207, 798, 894, 1008
FbaI TGATCA 1 cut(s) 879
Fnu4HI GCNGC 3 cut(s) 114, 503, 866
FokI GGATG 2 cut(s) 737, 983
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 114, 503, 866
FspBI CTAG 2 cut(s) 459, 584
GluI GCNGC 3 cut(s) 114, 503, 866
GsuI CTGGAG 2 cut(s) 253, 721
HaeIII GGCC 2 cut(s) 425, 555
Hin1II CATG 6 cut(s) 76, 100, 211, 802, 898, 1012
HincII GTYRAC 2 cut(s) 61, 521
HindII GTYRAC 2 cut(s) 61, 521
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 5 cut(s) 235, 590, 665, 780, 982
Hpy166II GTNNAC 3 cut(s) 61, 521, 811
Hpy188I TCNGA 4 cut(s) 189, 373, 724, 939
Hpy188III TCNNGA 6 cut(s) 83, 476, 799, 895, 917, 979
Hpy8I GTNNAC 3 cut(s) 61, 521, 811
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 6 cut(s) 61, 281, 378, 415, 616, 961
HpyCH4III ACNGT 4 cut(s) 138, 216, 525, 815
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 5 cut(s) 133, 491, 542, 701, 868
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 511, 539
HpyF3I CTNAG 7 cut(s) 92, 188, 324, 515, 852, 936, 961
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 6 cut(s) 76, 100, 211, 802, 898, 1012
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 5 cut(s) 46, 444, 478, 686, 879
LmnI GCTCC 2 cut(s) 640, 995
Lsp1109I GCAGC 2 cut(s) 100, 852
MaeI CTAG 2 cut(s) 459, 584
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 785, 922
MalI GATC 5 cut(s) 48, 446, 480, 688, 881
MboI GATC 5 cut(s) 46, 444, 478, 686, 879
MboII GAAGA 5 cut(s) 46, 162, 405, 708, 711
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 7 cut(s) 127, 286, 486, 768, 846, 875, 950
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 6 cut(s) 14, 37, 322, 631, 745, 847
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 846
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 97, 511, 539
NdeII GATC 5 cut(s) 46, 444, 478, 686, 879
NlaIII CATG 6 cut(s) 76, 100, 211, 802, 898, 1012
NlaIV GGNNCC 2 cut(s) 48, 549
NmuCI GTSAC 1 cut(s) 785
NspI RCATGY 1 cut(s) 100
PaeI GCATGC 1 cut(s) 100
PagI TCATGA 2 cut(s) 798, 894
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 4 cut(s) 590, 665, 780, 982
PflMI CCANNNNNTGG 1 cut(s) 231
PkrI GCNGC 3 cut(s) 115, 504, 867
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 48, 549
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 3 cut(s) 114, 503, 866
Sau3AI GATC 5 cut(s) 46, 444, 478, 686, 879
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 614
SmlI CTYRAG 3 cut(s) 387, 474, 635
SmoI CTYRAG 3 cut(s) 387, 474, 635
SphI GCATGC 1 cut(s) 100
Sse9I AATT 7 cut(s) 127, 286, 486, 768, 846, 875, 950
SsiI CCGC 2 cut(s) 502, 993
SspMI CTAG 2 cut(s) 459, 584
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 550
TaaI ACNGT 4 cut(s) 138, 216, 525, 815
TaiI ACGT 1 cut(s) 185
TaqI TCGA 4 cut(s) 14, 84, 242, 999
TasI AATT 7 cut(s) 127, 286, 486, 768, 846, 875, 950
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 505
TfiI GAWTC 4 cut(s) 590, 665, 780, 982
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 7 cut(s) 71, 149, 745, 765, 818, 895, 969
TseFI GTSAC 1 cut(s) 785
TseI GCWGC 2 cut(s) 113, 865
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 8 cut(s) 89, 224, 279, 384, 405, 517, 735, 997
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 7 cut(s) 71, 149, 745, 765, 818, 895, 969
Van91I CCANNNNNTGG 1 cut(s) 231
XapI RAATTY 2 cut(s) 127, 950
XceI RCATGY 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 2 cut(s) 459, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.