Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Forward (+)

9677844 .. 9679502

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGATGAAGATTTTTTCTTACCCGATTTCTCACTAGTAGACATTGATTTCGACTTTAATATTTACGAAGAAAATAATTTATCACCTGATGAATCTTTATCAAATTCACGAAGAGCTGATCAATCGTCAAAGTTTGATCATCAAATGCATTTTGAGTGCCTCAGAGAGAAGCCAAAGGCAGCGGTGAAGCCTATGATGAAGATCAACAACAAGCAACAACTGATTTCTTTTGATTTCTCTAGTAATGTTATTTCTTCTCCAGCCGCGGAGGAGATCATTATGGATAAATTGGTTGGTCGTGGAACCAAAAGAAAAACATGTTCTCATGGCACAAGATCTCCGGTTCTTGCGAAAGAACATGTTTTAGCCGAGAGAAAGCGCCGTGAGAAGCTTTCTGAAAAATTCATTGCTCTTTCAGCTCTCCTTCCCGGGCTTAAGAAGGCGGACAAGGTAACGATTCTTGATGACGCGATCTCGCGTATGAAACAACTCCAAGAACAACTAAGAACGCTCAAGGAAGAAAAAGAAGCAACGAGACAAATGGAATCCATGATTCTTGTAAAGAAATCTAAAGTGTTTTTCGACGAGGAACCTAACCTATCATGTTCTCCTTCAGTTCATATTGAATTCGATCAAGCATTACCAGAAATCGAAGCGAAAATTTCTCAAAATGACATTCTCATCCGAATCCTTTGCGAGAAAAGCAAAGGGTGCATGATCAACATACTAAACACAATTGAAAACTTTCAATTGCGCATTGAAAATAGCATCGTATTGCCATTCGGAGACTCGACTCTCGACATCACAGTCCTTGCACAGATGGATAAAGATTTTTCGATGAGTATACTTAAGGATCTTGTACGGAACCTGAGACTCGCAATGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006996 GO:0007029 GO:0008150 GO:0009889 GO:0009987 GO:0010256 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

295

Amino Acids

33.79

Weight (kDa)

5.87

Isoelectric Point (pI)

66.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	119 - 165	3e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	806
Acc16I	TGCGCA	1 cut(s)	755
AccI	GTMKAC	2 cut(s)	39, 844
AccII	CGCG	3 cut(s)	266, 470, 478
AciI	CCGC	4 cut(s)	182, 264, 266, 443
AclWI	GGATC	1 cut(s)	861
AcsI	RAATTY	4 cut(s)	103, 401, 626, 660
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	1 cut(s)	861
AflII	CTTAAG	2 cut(s)	434, 848
AflIII	ACRYGT	2 cut(s)	317, 358
AgsI	TTSAA	4 cut(s)	626, 740, 749, 761
AhlI	ACTAGT	1 cut(s)	34
AluBI	AGCT	3 cut(s)	116, 391, 419
AluI	AGCT	3 cut(s)	116, 391, 419
Alw26I	GTCTC	3 cut(s)	529, 780, 865
AlwI	GGATC	1 cut(s)	861
Ama87I	CYCGRG	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	4 cut(s)	103, 401, 626, 660
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
Asp700I	GAANNNNTTC	1 cut(s)	744
AspLEI	GCGC	2 cut(s)	381, 756
AsuC2I	CCSGG	2 cut(s)	429, 430
AsuHPI	GGTGA	2 cut(s)	75, 196
AvaI	CYCGRG	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	814
BceAI	ACGGC	1 cut(s)	366
BcgI	CGANNNNNNTGC	2 cut(s)	675, 709
BclI	TGATCA	3 cut(s)	118, 136, 717
BcnI	CCSGG	2 cut(s)	429, 430
BcoDI	GTCTC	3 cut(s)	529, 780, 865
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 240
BfoI	RGCGCY	1 cut(s)	382
BfrI	CTTAAG	2 cut(s)	434, 848
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	2 cut(s)	180, 264
BlsI	GCNGC	2 cut(s)	181, 265
Bme1390I	CCNGG	2 cut(s)	429, 430
BmeT110I	CYCGRG	1 cut(s)	428
BmiI	GGNNCC	3 cut(s)	304, 591, 866
BmrFI	CCNGG	2 cut(s)	429, 430
BmsI	GCATC	1 cut(s)	777
BpmI	CTGGAG	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	2 cut(s)	429, 430
BsaBI	GATNNNNATC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	264, 428
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bse3DI	GCAATG	2 cut(s)	405, 885
Bse8I	GATNNNNATC	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	264, 428
BseGI	GGATG	2 cut(s)	10, 681
BseJI	GATNNNNATC	1 cut(s)	200
BseMI	GCAATG	2 cut(s)	405, 885
BseMII	CTCAG	2 cut(s)	175, 860
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	191
Bsh1236I	CGCG	3 cut(s)	266, 470, 478
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	341, 429
BsmAI	GTCTC	3 cut(s)	529, 780, 865
BsoBI	CYCGRG	1 cut(s)	428
Bsp143I	GATC	9 cut(s)	118, 136, 201, 273, 335, 471, 631, 717, 853
BspACI	CCGC	4 cut(s)	182, 264, 266, 443
BspCNI	CTCAG	2 cut(s)	174, 861
BspFNI	CGCG	3 cut(s)	266, 470, 478
BspLI	GGNNCC	3 cut(s)	304, 591, 866
BspPI	GGATC	1 cut(s)	861
BspQI	GCTCTTC	1 cut(s)	106
BspTI	CTTAAG	2 cut(s)	434, 848
BsrDI	GCAATG	2 cut(s)	405, 885
BssECI	CCNNGG	2 cut(s)	264, 428
BssMI	GATC	9 cut(s)	118, 136, 201, 273, 335, 471, 631, 717, 853
BssNAI	GTATAC	1 cut(s)	845
Bst1107I	GTATAC	1 cut(s)	845
Bst4CI	ACNGT	1 cut(s)	808
Bst6I	CTCTTC	1 cut(s)	106
BstAFI	CTTAAG	2 cut(s)	434, 848
BstAPI	GCANNNNNTGC	1 cut(s)	711
BstDEI	CTNAG	3 cut(s)	161, 503, 869
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	10, 681
BstFNI	CGCG	3 cut(s)	266, 470, 478
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	381, 756
BstKTI	GATC	9 cut(s)	121, 139, 204, 276, 338, 474, 634, 720, 856
BstMAI	GTCTC	3 cut(s)	529, 780, 865
BstMBI	GATC	9 cut(s)	118, 136, 201, 273, 335, 471, 631, 717, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 702, 711
BstNSI	RCATGY	2 cut(s)	321, 362
BstSCI	CCNGG	2 cut(s)	427, 428
BstUI	CGCG	3 cut(s)	266, 470, 478
BstV1I	GCAGC	1 cut(s)	191
BstX2I	RGATCY	2 cut(s)	335, 853
BstYI	RGATCY	2 cut(s)	335, 853
BstZ17I	GTATAC	1 cut(s)	845
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	10, 681
CfoI	GCGC	2 cut(s)	381, 756
Cfr42I	CCGCGG	1 cut(s)	267
Cfr9I	CCCGGG	1 cut(s)	428
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	860
CviAII	CATG	6 cut(s)	318, 326, 359, 550, 603, 715
CviJI	RGCY	8 cut(s)	116, 172, 190, 263, 368, 391, 419, 433
CviKI_1	RGCY	8 cut(s)	116, 172, 190, 263, 368, 391, 419, 433
CviQI	GTAC	1 cut(s)	860
DdeI	CTNAG	3 cut(s)	161, 503, 869
DpnI	GATC	9 cut(s)	120, 138, 203, 275, 337, 473, 633, 719, 855
DpnII	GATC	9 cut(s)	118, 136, 201, 273, 335, 471, 631, 717, 853
DrdI	GACNNNNNNGTC	1 cut(s)	806
DseDI	GACNNNNNNGTC	1 cut(s)	806
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	626
EcoT22I	ATGCAT	1 cut(s)	150
FaeI	CATG	6 cut(s)	321, 329, 362, 553, 606, 718
FatI	CATG	6 cut(s)	317, 325, 358, 549, 602, 714
FbaI	TGATCA	3 cut(s)	118, 136, 717
FblI	GTMKAC	2 cut(s)	39, 844
Fnu4HI	GCNGC	2 cut(s)	180, 264
FokI	GGATG	2 cut(s)	17, 668
Fsp4HI	GCNGC	2 cut(s)	180, 264
FspBI	CTAG	2 cut(s)	35, 240
FspI	TGCGCA	1 cut(s)	755
GlaI	GCGC	2 cut(s)	380, 755
GluI	GCNGC	2 cut(s)	180, 264
GsuI	CTGGAG	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	382
HapII	CCGG	2 cut(s)	341, 429
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	2 cut(s)	381, 756
Hin1II	CATG	6 cut(s)	321, 329, 362, 553, 606, 718
Hin6I	GCGC	2 cut(s)	379, 754
HinP1I	GCGC	2 cut(s)	379, 754
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	8 cut(s)	92, 457, 545, 553, 687, 788, 793, 873
HpaII	CCGG	2 cut(s)	341, 429
HphI	GGTGA	2 cut(s)	75, 196
Hpy166II	GTNNAC	2 cut(s)	40, 845
Hpy188I	TCNGA	4 cut(s)	164, 397, 686, 785
Hpy188III	TCNNGA	3 cut(s)	108, 461, 797
Hpy8I	GTNNAC	2 cut(s)	40, 845
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	3 cut(s)	433, 434, 621
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4V	TGCA	3 cut(s)	148, 714, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 702, 711
HpyF3I	CTNAG	3 cut(s)	161, 503, 869
Hsp92II	CATG	6 cut(s)	321, 329, 362, 553, 606, 718
HspAI	GCGC	2 cut(s)	379, 754
Ksp22I	TGATCA	3 cut(s)	118, 136, 717
KspI	CCGCGG	1 cut(s)	267
Kzo9I	GATC	9 cut(s)	118, 136, 201, 273, 335, 471, 631, 717, 853
LguI	GCTCTTC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	99, 273, 354, 442, 657, 881
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	1 cut(s)	777
MaeI	CTAG	2 cut(s)	35, 240
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	9 cut(s)	120, 138, 203, 275, 337, 473, 633, 719, 855
MboI	GATC	9 cut(s)	118, 136, 201, 273, 335, 471, 631, 717, 853
MboII	GAAGA	6 cut(s)	20, 80, 123, 211, 246, 530
MfeI	CAATTG	2 cut(s)	735, 749
MflI	RGATCY	2 cut(s)	335, 853
MluCI	AATT	8 cut(s)	76, 103, 287, 401, 626, 660, 735, 749
MlyI	GAGTC	3 cut(s)	782, 787, 867
MnlI	CCTC	3 cut(s)	170, 262, 580
Mph1103I	ATGCAT	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	3 cut(s)	57, 435, 849
MspA1I	CMGCKG	2 cut(s)	182, 266
MspCI	CTTAAG	2 cut(s)	434, 848
MspI	CCGG	2 cut(s)	341, 429
MspR9I	CCNGG	2 cut(s)	429, 430
MunI	CAATTG	2 cut(s)	735, 749
MvnI	CGCG	3 cut(s)	266, 470, 478
MwoI	GCNNNNNNNGC	3 cut(s)	416, 702, 711
NciI	CCSGG	2 cut(s)	429, 430
NdeII	GATC	9 cut(s)	118, 136, 201, 273, 335, 471, 631, 717, 853
NlaIII	CATG	6 cut(s)	321, 329, 362, 553, 606, 718
NlaIV	GGNNCC	3 cut(s)	304, 591, 866
NmeAIII	GCCGAG	1 cut(s)	394
NsbI	TGCGCA	1 cut(s)	755
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	2 cut(s)	321, 362
PciI	ACATGT	2 cut(s)	317, 358
PciSI	GCTCTTC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	5 cut(s)	92, 457, 545, 553, 687
PkrI	GCNGC	2 cut(s)	181, 265
PleI	GAGTC	3 cut(s)	782, 787, 867
PpsI	GAGTC	3 cut(s)	782, 787, 867
PscI	ACATGT	2 cut(s)	317, 358
PspN4I	GGNNCC	3 cut(s)	304, 591, 866
PsuI	RGATCY	2 cut(s)	335, 853
RsaI	GTAC	1 cut(s)	861
RsaNI	GTAC	1 cut(s)	860
SacII	CCGCGG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	3 cut(s)	57, 435, 849
SatI	GCNGC	2 cut(s)	180, 264
Sau3AI	GATC	9 cut(s)	118, 136, 201, 273, 335, 471, 631, 717, 853
SchI	GAGTC	3 cut(s)	782, 787, 867
ScrFI	CCNGG	2 cut(s)	429, 430
SetI	ASST	8 cut(s)	88, 118, 393, 421, 453, 595, 600, 870
SfaNI	GCATC	1 cut(s)	777
Sfr303I	CCGCGG	1 cut(s)	267
SgrBI	CCGCGG	1 cut(s)	267
SmaI	CCCGGG	1 cut(s)	430
SmlI	CTYRAG	3 cut(s)	434, 512, 848
SmoI	CTYRAG	3 cut(s)	434, 512, 848
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	8 cut(s)	76, 103, 287, 401, 626, 660, 735, 749
SsiI	CCGC	4 cut(s)	182, 264, 266, 443
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	2 cut(s)	35, 240
StyD4I	CCNGG	2 cut(s)	427, 428
TaaI	ACNGT	1 cut(s)	808
TaqI	TCGA	7 cut(s)	51, 582, 630, 651, 791, 798, 836
TasI	AATT	8 cut(s)	76, 103, 287, 401, 626, 660, 735, 749
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	5 cut(s)	92, 457, 545, 553, 687
Tru1I	TTAA	3 cut(s)	57, 435, 849
Tru9I	TTAA	3 cut(s)	57, 435, 849
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	6 cut(s)	21, 105, 212, 394, 497, 608
TspGWI	ACGGA	1 cut(s)	877
TspMI	CCCGGG	1 cut(s)	428
Vha464I	CTTAAG	2 cut(s)	434, 848
XapI	RAATTY	4 cut(s)	103, 401, 626, 660
XceI	RCATGY	2 cut(s)	321, 362
XmaI	CCCGGG	1 cut(s)	428
XmiI	GTMKAC	2 cut(s)	39, 844
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	2 cut(s)	35, 240
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.