Rh6DG028600

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000792
Physical Location & Seq
Forward (+)
2580804 .. 2583268
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG028600.1

Sequence Viewer

Length: 975 bp
ATGGAGGATCCCTTCTTCGTTAACCAGTGGCACATGAACTCTCTCGATGAGCTCAGCATGCTACCATTAGCAGCTGCCTTTGGAGAGAATTTGCAACAGTCTCACTGTCACCCGATTTTTAACCCTAAATCTTCTGCCAATACTTCTCTGAGTTCCATTGATAGACCCATGAAACAGCTCAAACCCAACAACTGGAGTCCATCGAACCACCAGTTTGCTTCCTTGCCAAACCTTCTCTCCTTTGTCAATTCATACAACACAAACCAAGTGGGGGTTGTTAAGCCTAAGGAGGAGACGGCAGTACGTTCAAAAAACATAAACCATTTCCCTTCAGATATATTGGTTTCTCAAGGTTCATTTGGCAACCAAAACTCTTCATTGAGGGCCAGTCAGGGAACAAACAGGATCAGCACAAACACTAGGCTTTCGCAAGCTCAAGATCACATAATTGCAGAAAGGAAGAGGCGAGAGAAGCTCAGTCAACGGTTCATTGCATTATCTGCAATGGTTCCTGGCCTAAAAAAGACGGACAAGGCTTCTGTTCTAGGAGATTCTATCAAGTACATCAAGCAACTACAGGAGAAGGTAAAGACACTTGAGGAGCAGACGAGAGTGAAAAAGATGGAATCAGTTGTCTCTATGAAAAGATCACAGCTCATTGCAAATGGTGATAACTCTTCTTCGGACGATAACAACTCCAGTGTTTCATTTGAGGAGACACTGCCAGAAATTGAAGCAAGATTCTGTGACAACAATGTCCTGATAAGAGTTCACTGTGAGAAAAGAAAAGGAGTTGTTGAAAAAACAATTGCTGAGGTTGAGAAGCTGCAACTAAAATTGATCAATAGCAGTGTCATGACATTTGGTAGTTCTGTTCTTGATGTAACCATTGTTGCTCAGATGGAAGTGGAATTCTGTCTCTCAGTGAAGGATGTCGTCAAGAATCTACGCTCAGCTTTCGACTTGTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

324

Amino Acids

36.35

Weight (kDa)

8.94

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 147 - 193 6.3e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 755
AccB7I CCANNNNNTGG 1 cut(s) 192
AclWI GGATC 3 cut(s) 2, 15, 413
AcsI RAATTY 2 cut(s) 88, 911
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 2 cut(s) 303, 563
AfiI CCNNNNNNNGG 2 cut(s) 192, 271
AgsI TTSAA 3 cut(s) 309, 734, 800
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 8 cut(s) 52, 74, 178, 434, 475, 655, 826, 956
AluI AGCT 8 cut(s) 52, 74, 178, 434, 475, 655, 826, 956
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 5 cut(s) 105, 287, 640, 710, 923
AlwI GGATC 3 cut(s) 2, 15, 413
AoxI GGCC 2 cut(s) 384, 514
ApeKI GCWGC 3 cut(s) 71, 74, 826
ApoI RAATTY 2 cut(s) 88, 911
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 101, 680
AxyI CCTNAGG 1 cut(s) 285
BamHI GGATCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 813
BbvI GCAGC 3 cut(s) 61, 83, 813
BccI CCATC 3 cut(s) 208, 616, 895
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 513
BclI TGATCA 1 cut(s) 840
BcoDI GTCTC 5 cut(s) 105, 287, 640, 710, 923
BfaI CTAG 2 cut(s) 420, 545
BfmI CTRYAG 1 cut(s) 575
BisI GCNGC 3 cut(s) 72, 75, 827
BlpI GCTNAGC 2 cut(s) 53, 952
BlsI GCNGC 3 cut(s) 73, 76, 828
Bme1390I CCNGG 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 9, 510
BmrFI CCNGG 1 cut(s) 513
BplI GAGNNNNNCTC 2 cut(s) 459, 491
BpmI CTGGAG 2 cut(s) 214, 682
Bpu10I CCTNAGC 1 cut(s) 813
Bpu1102I GCTNAGC 2 cut(s) 53, 952
BpuEI CTTGAG 3 cut(s) 333, 420, 617
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 271
Bse1I ACTGG 5 cut(s) 25, 197, 211, 387, 699
Bse21I CCTNAGG 1 cut(s) 285
Bse3DI GCAATG 3 cut(s) 489, 510, 657
BseBI CCWGG 1 cut(s) 513
BseGI GGATG 1 cut(s) 937
BseLI CCNNNNNNNGG 2 cut(s) 192, 271
BseMI GCAATG 3 cut(s) 489, 510, 657
BseMII CTCAG 7 cut(s) 67, 140, 490, 804, 911, 936, 966
BseNI ACTGG 5 cut(s) 25, 197, 211, 387, 699
BseRI GAGGAG 3 cut(s) 305, 614, 728
BseXI GCAGC 3 cut(s) 61, 83, 813
BshFI GGCC 2 cut(s) 386, 516
BsiHKAI GWGCWC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 192, 271
BsmAI GTCTC 5 cut(s) 105, 287, 640, 710, 923
BsmBI CGTCTC 1 cut(s) 287
BsnI GGCC 2 cut(s) 386, 516
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 5 cut(s) 7, 405, 439, 647, 840
Bsp1720I GCTNAGC 2 cut(s) 53, 952
BspANI GGCC 2 cut(s) 386, 516
BspCNI CTCAG 7 cut(s) 66, 141, 489, 805, 910, 935, 965
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 2 cut(s) 9, 510
BspPI GGATC 3 cut(s) 2, 15, 413
BsrDI GCAATG 3 cut(s) 489, 510, 657
BsrI ACTGG 5 cut(s) 25, 197, 211, 387, 699
BssMI GATC 5 cut(s) 7, 405, 439, 647, 840
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 4 cut(s) 99, 107, 486, 776
Bst6I CTCTTC 3 cut(s) 379, 455, 682
BstAPI GCANNNNNTGC 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 59, 432
BstDEI CTNAG 8 cut(s) 53, 149, 285, 476, 813, 897, 922, 952
BstF5I GGATG 1 cut(s) 937
BstKTI GATC 5 cut(s) 10, 408, 442, 650, 843
BstMAI GTCTC 5 cut(s) 105, 287, 640, 710, 923
BstMBI GATC 5 cut(s) 7, 405, 439, 647, 840
BstMWI GCNNNNNNNGC 3 cut(s) 58, 472, 500
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 511
BstSFI CTRYAG 1 cut(s) 575
BstV1I GCAGC 3 cut(s) 61, 83, 813
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 386, 516
BtsCI GGATG 1 cut(s) 937
BtsI GCAGTG 2 cut(s) 719, 856
BtsIMutI CAGTG 7 cut(s) 32, 103, 706, 719, 772, 856, 930
Cac8I GCNNGC 2 cut(s) 59, 432
CciI TCATGA 1 cut(s) 855
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 2 cut(s) 302, 562
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 5 cut(s) 34, 58, 169, 856, 970
CviQI GTAC 2 cut(s) 302, 562
DdeI CTNAG 8 cut(s) 53, 149, 285, 476, 813, 897, 922, 952
DpnI GATC 5 cut(s) 9, 407, 441, 649, 842
DpnII GATC 5 cut(s) 7, 405, 439, 647, 840
DrdI GACNNNNNNGTC 1 cut(s) 755
DseDI GACNNNNNNGTC 1 cut(s) 755
Eam1104I CTCTTC 3 cut(s) 379, 455, 682
EarI CTCTTC 3 cut(s) 379, 455, 682
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 911
EcoRII CCWGG 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 5 cut(s) 37, 61, 172, 859, 973
FatI CATG 5 cut(s) 33, 57, 168, 855, 969
FbaI TGATCA 1 cut(s) 840
Fnu4HI GCNGC 3 cut(s) 72, 75, 827
FokI GGATG 1 cut(s) 944
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 72, 75, 827
FspBI CTAG 2 cut(s) 420, 545
GluI GCNGC 3 cut(s) 72, 75, 827
GsuI CTGGAG 2 cut(s) 214, 682
HaeIII GGCC 2 cut(s) 386, 516
Hin1II CATG 5 cut(s) 37, 61, 172, 859, 973
HincII GTYRAC 2 cut(s) 22, 482
HindII GTYRAC 2 cut(s) 22, 482
HinfI GANTC 5 cut(s) 196, 551, 626, 741, 943
HpaI GTTAAC 1 cut(s) 22
HphI GGTGA 2 cut(s) 101, 680
Hpy166II GTNNAC 3 cut(s) 22, 482, 772
Hpy188I TCNGA 4 cut(s) 150, 334, 685, 900
Hpy188III TCNNGA 6 cut(s) 44, 437, 760, 856, 878, 940
Hpy8I GTNNAC 3 cut(s) 22, 482, 772
HpyAV CCTTC 5 cut(s) 22, 242, 339, 577, 922
HpyCH4III ACNGT 4 cut(s) 99, 107, 486, 776
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 94, 452, 494, 503, 662, 829
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 472, 500
HpyF3I CTNAG 8 cut(s) 53, 149, 285, 476, 813, 897, 922, 952
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 5 cut(s) 37, 61, 172, 859, 973
Ksp22I TGATCA 1 cut(s) 840
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 5 cut(s) 7, 405, 439, 647, 840
LmnI GCTCC 1 cut(s) 601
Lsp1109I GCAGC 3 cut(s) 61, 83, 813
MaeI CTAG 2 cut(s) 420, 545
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 3 cut(s) 107, 746, 883
MalI GATC 5 cut(s) 9, 407, 441, 649, 842
MboI GATC 5 cut(s) 7, 405, 439, 647, 840
MboII GAAGA 6 cut(s) 7, 123, 366, 472, 669, 672
MfeI CAATTG 1 cut(s) 807
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 7 cut(s) 88, 247, 447, 729, 807, 836, 911
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 6 cut(s) 283, 375, 456, 592, 706, 808
MseI TTAA 3 cut(s) 21, 120, 279
MspA1I CMGCKG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 513
MunI CAATTG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 3 cut(s) 58, 472, 500
NdeII GATC 5 cut(s) 7, 405, 439, 647, 840
NlaIII CATG 5 cut(s) 37, 61, 172, 859, 973
NlaIV GGNNCC 2 cut(s) 9, 510
NmuCI GTSAC 2 cut(s) 107, 746
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 855
PfeI GAWTC 4 cut(s) 551, 626, 741, 943
PflMI CCANNNNNTGG 1 cut(s) 192
PkrI GCNGC 3 cut(s) 73, 76, 828
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 9, 510
PspPI GGNCC 1 cut(s) 384
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 2 cut(s) 303, 563
RsaNI GTAC 2 cut(s) 302, 562
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 21, 120, 279
SatI GCNGC 3 cut(s) 72, 75, 827
Sau3AI GATC 5 cut(s) 7, 405, 439, 647, 840
Sau96I GGNCC 1 cut(s) 384
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 575
SmlI CTYRAG 3 cut(s) 348, 435, 596
SmoI CTYRAG 3 cut(s) 348, 435, 596
SphI GCATGC 1 cut(s) 61
Sse9I AATT 7 cut(s) 88, 247, 447, 729, 807, 836, 911
SspMI CTAG 2 cut(s) 420, 545
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 511
TaaI ACNGT 4 cut(s) 99, 107, 486, 776
TaiI ACGT 1 cut(s) 307
TaqI TCGA 3 cut(s) 45, 203, 960
TasI AATT 7 cut(s) 88, 247, 447, 729, 807, 836, 911
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 4 cut(s) 551, 626, 741, 943
Tru1I TTAA 3 cut(s) 21, 120, 279
Tru9I TTAA 3 cut(s) 21, 120, 279
TscAI CASTG 7 cut(s) 32, 110, 706, 726, 779, 856, 930
TseFI GTSAC 2 cut(s) 107, 746
TseI GCWGC 3 cut(s) 71, 74, 826
Tsp45I GTSAC 2 cut(s) 107, 746
TspDTI ATGAA 9 cut(s) 50, 185, 240, 345, 366, 478, 656, 696, 958
TspGWI ACGGA 1 cut(s) 542
TspRI CASTG 7 cut(s) 32, 110, 706, 726, 779, 856, 930
Van91I CCANNNNNTGG 1 cut(s) 192
XapI RAATTY 2 cut(s) 88, 911
XceI RCATGY 1 cut(s) 61
XspI CTAG 2 cut(s) 420, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.