Rorug02G0161200

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000792
Physical Location & Seq
Reverse (-)
14408806 .. 14411275
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0161200.1

Sequence Viewer

Length: 948 bp
ATGGATCATCGCCGGGAATGTGATGGCCAGCCAGCATTTTGTGCTCCAAATACAACTCCCCATTTTTTCAAGATCATTCTAAACGGCACTTCTAGAGACACCAAACTGAGACTTCCATACAAATTTGTGAAGAAATATGGAGGAGAGCTATCACATTCAGTATGTCTTAAGGTTCGGGGTGGTTCAAAATGGGAAGTGGATATCACGAGACGGGATTGTAAGGTTTGGTTTGAAAAGGGTTGGCCAGAGTTCTCTAATTCTTGCTCCCTTGACCACGGCCACTTTCTGGTTTTCGGATATGAAGGGAATTCTAAATTCGATGTTTGCATATTCGACACAACTGCCACAGAAATTGACTATCCGATAACTGTTGAAGATGATGATTCGTCTGGTGAAATTTTGGAGGACTGTCCAAGGGGTTCAAGGAATTCAGGGGATAAATCTCCACTCCCAGGTTCTCCTCCTTGCAAGAAAAACAGAAAAAGTTCAACTGGTAAACCAGAAATCAACCCCAAGATTCAAATGGATGATGATGATGATGATGAAAACGATGAAAGTGATGAGGGTAGTGAGGAGGGCGAGGATGAAGATAATCATGGTATTCGAAAGGAAATAGCTTTTAAGAGAGCTAAAGCTTATAAACCCGCAGACCCTCATTTTGTGGTTGCAATCAATCCCTCTTGTACCCGTGGAGGTTATCTGCATGTGCCATCTTTGTTTAGCAAGACATATCTTGTTAAGCAGCCTACTCAAATCATGCTTCAAACGGTTTCAAACGAGGAACCTTGCTATATAGATATGCATTATCACAGATCATCAAGCAGATTACGGACTGGTTGGCCTGGATTTGTGAGAAGCAATAATTTATTAGTGGGTGATGCTTGTGTCTTTGTGTTGAAAGACAACAATGAATTTCTATTTGATGTTGTATTTTACCGGGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

315

Amino Acids

35.72

Weight (kDa)

5.53

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 23 - 113 1.4e-15 B3 DNA binding domain
B3 PF02362 221 - 310 5e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 639
AccB7I CCANNNNNTGG 1 cut(s) 286
AciI CCGC 1 cut(s) 645
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 3 cut(s) 25, 242, 277
AcsI RAATTY 6 cut(s) 122, 307, 314, 396, 427, 911
AfaI GTAC 1 cut(s) 685
AfiI CCNNNNNNNGG 2 cut(s) 286, 452
AflII CTTAAG 1 cut(s) 167
AjnI CCWGG 2 cut(s) 451, 841
AluBI AGCT 4 cut(s) 148, 617, 629, 635
AluI AGCT 4 cut(s) 148, 617, 629, 635
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 3 cut(s) 90, 103, 202
AlwI GGATC 1 cut(s) 12
AoxI GGCC 4 cut(s) 25, 242, 277, 839
ApeKI GCWGC 1 cut(s) 742
ApoI RAATTY 6 cut(s) 122, 307, 314, 396, 427, 911
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp700I GAANNNNTTC 1 cut(s) 484
AsuC2I CCSGG 2 cut(s) 14, 938
AsuHPI GGTGA 2 cut(s) 404, 887
AsuII TTCGAA 1 cut(s) 604
BalI TGGCCA 2 cut(s) 27, 244
BauI CACGAG 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 754
BccI CCATC 2 cut(s) 17, 718
BceAI ACGGC 2 cut(s) 100, 292
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 2 cut(s) 453, 843
BcnI CCSGG 2 cut(s) 14, 938
BcoDI GTCTC 3 cut(s) 90, 103, 202
BfaI CTAG 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 743
BlsI GCNGC 1 cut(s) 744
Bme1390I CCNGG 4 cut(s) 14, 453, 843, 938
BmiI GGNNCC 1 cut(s) 783
BmrFI CCNGG 4 cut(s) 14, 453, 843, 938
BmsI GCATC 1 cut(s) 868
Bpu14I TTCGAA 1 cut(s) 604
BpuMI CCSGG 2 cut(s) 14, 938
BsaJI CCNNGG 4 cut(s) 274, 413, 451, 688
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 452
Bse1I ACTGG 2 cut(s) 496, 838
BseBI CCWGG 2 cut(s) 453, 843
BseDI CCNNGG 4 cut(s) 274, 413, 451, 688
BseGI GGATG 2 cut(s) 532, 589
BseLI CCNNNNNNNGG 2 cut(s) 286, 452
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 2 cut(s) 496, 838
BseRI GAGGAG 3 cut(s) 156, 450, 587
BseXI GCAGC 1 cut(s) 754
BshFI GGCC 4 cut(s) 27, 244, 279, 841
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 13, 937
BslI CCNNNNNNNGG 2 cut(s) 286, 452
BsmAI GTCTC 3 cut(s) 90, 103, 202
BsmBI CGTCTC 1 cut(s) 202
BsnI GGCC 4 cut(s) 27, 244, 279, 841
Bsp119I TTCGAA 1 cut(s) 604
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 3 cut(s) 4, 72, 812
BspACI CCGC 1 cut(s) 645
BspANI GGCC 4 cut(s) 27, 244, 279, 841
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 783
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 604
BspTI CTTAAG 1 cut(s) 167
BsrI ACTGG 2 cut(s) 496, 838
BssECI CCNNGG 4 cut(s) 274, 413, 451, 688
BssMI GATC 3 cut(s) 4, 72, 812
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 205
Bst2UI CCWGG 2 cut(s) 453, 843
Bst4CI ACNGT 3 cut(s) 370, 410, 769
BstAFI CTTAAG 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 604
BstC8I GCNNGC 2 cut(s) 29, 33
BstDEI CTNAG 1 cut(s) 107
BstDSI CCRYGG 2 cut(s) 274, 688
BstF5I GGATG 2 cut(s) 532, 589
BstKTI GATC 3 cut(s) 7, 75, 815
BstMAI GTCTC 3 cut(s) 90, 103, 202
BstMBI GATC 3 cut(s) 4, 72, 812
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 2 cut(s) 453, 843
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 4 cut(s) 12, 451, 841, 936
BstV1I GCAGC 1 cut(s) 754
BsuRI GGCC 4 cut(s) 27, 244, 279, 841
BtgI CCRYGG 2 cut(s) 274, 688
BtsCI GGATG 2 cut(s) 532, 589
Cac8I GCNNGC 2 cut(s) 29, 33
Csp6I GTAC 1 cut(s) 684
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 3 cut(s) 596, 704, 757
CviQI GTAC 1 cut(s) 684
DdeI CTNAG 1 cut(s) 107
DpnI GATC 3 cut(s) 6, 74, 814
DpnII GATC 3 cut(s) 4, 72, 812
EaeI YGGCCR 3 cut(s) 25, 242, 277
Eco130I CCWWGG 1 cut(s) 413
Eco32I GATATC 1 cut(s) 202
EcoRI GAATTC 2 cut(s) 307, 427
EcoRII CCWGG 2 cut(s) 451, 841
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 413
EcoT22I ATGCAT 1 cut(s) 804
ErhI CCWWGG 1 cut(s) 413
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 3 cut(s) 599, 707, 760
FatI CATG 3 cut(s) 595, 703, 756
FauI CCCGC 1 cut(s) 652
Fnu4HI GCNGC 1 cut(s) 743
FokI GGATG 2 cut(s) 539, 596
Fsp4HI GCNGC 1 cut(s) 743
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 743
HaeIII GGCC 4 cut(s) 27, 244, 279, 841
HapII CCGG 2 cut(s) 13, 937
Hin1II CATG 3 cut(s) 599, 707, 760
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 2 cut(s) 383, 517
HpaII CCGG 2 cut(s) 13, 937
HphI GGTGA 2 cut(s) 404, 887
Hpy166II GTNNAC 1 cut(s) 497
Hpy188I TCNGA 2 cut(s) 296, 363
Hpy188III TCNNGA 3 cut(s) 70, 93, 205
Hpy8I GTNNAC 1 cut(s) 497
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 3 cut(s) 370, 410, 769
HpyCH4V TGCA 5 cut(s) 327, 468, 668, 703, 802
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 3 cut(s) 599, 707, 760
Kzo9I GATC 3 cut(s) 4, 72, 812
LmnI GCTCC 2 cut(s) 49, 269
Lsp1109I GCAGC 1 cut(s) 754
LweI GCATC 1 cut(s) 868
MaeI CTAG 1 cut(s) 93
MalI GATC 3 cut(s) 6, 74, 814
MboI GATC 3 cut(s) 4, 72, 812
MboII GAAGA 3 cut(s) 142, 386, 599
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 2 cut(s) 27, 244
MluCI AATT 9 cut(s) 122, 256, 307, 314, 351, 396, 427, 862, 911
MluNI TGGCCA 2 cut(s) 27, 244
Mox20I TGGCCA 2 cut(s) 27, 244
Mph1103I ATGCAT 1 cut(s) 804
MroXI GAANNNNTTC 1 cut(s) 484
MscI TGGCCA 2 cut(s) 27, 244
MseI TTAA 3 cut(s) 168, 621, 738
Msp20I TGGCCA 2 cut(s) 27, 244
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 2 cut(s) 13, 937
MspR9I CCNGG 4 cut(s) 14, 453, 843, 938
MvaI CCWGG 2 cut(s) 453, 843
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 2 cut(s) 14, 938
NdeII GATC 3 cut(s) 4, 72, 812
NlaIII CATG 3 cut(s) 599, 707, 760
NlaIV GGNNCC 1 cut(s) 783
NsiI ATGCAT 1 cut(s) 804
NspI RCATGY 1 cut(s) 707
NspV TTCGAA 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 484
PfeI GAWTC 2 cut(s) 383, 517
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 1 cut(s) 744
PsiI TTATAA 1 cut(s) 639
Psp6I CCWGG 2 cut(s) 451, 841
PspGI CCWGG 2 cut(s) 451, 841
PspN4I GGNNCC 1 cut(s) 783
RsaI GTAC 1 cut(s) 685
RsaNI GTAC 1 cut(s) 684
SaqAI TTAA 3 cut(s) 168, 621, 738
SatI GCNGC 1 cut(s) 743
Sau3AI GATC 3 cut(s) 4, 72, 812
ScrFI CCNGG 4 cut(s) 14, 453, 843, 938
SduI GDGCHC 1 cut(s) 46
SetI ASST 9 cut(s) 150, 174, 225, 457, 619, 631, 637, 697, 787
SfaNI GCATC 1 cut(s) 868
SfuI TTCGAA 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 9 cut(s) 122, 256, 307, 314, 351, 396, 427, 862, 911
SsiI CCGC 1 cut(s) 645
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 4 cut(s) 12, 451, 841, 936
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 3 cut(s) 370, 410, 769
TaqI TCGA 3 cut(s) 318, 333, 604
TasI AATT 9 cut(s) 122, 256, 307, 314, 351, 396, 427, 862, 911
TfiI GAWTC 2 cut(s) 383, 517
Tru1I TTAA 3 cut(s) 168, 621, 738
Tru9I TTAA 3 cut(s) 168, 621, 738
TseI GCWGC 1 cut(s) 742
TspDTI ATGAA 5 cut(s) 315, 558, 567, 600, 924
TspGWI ACGGA 1 cut(s) 844
Van91I CCANNNNNTGG 1 cut(s) 286
Vha464I CTTAAG 1 cut(s) 167
XapI RAATTY 6 cut(s) 122, 307, 314, 396, 427, 911
XbaI TCTAGA 1 cut(s) 92
XceI RCATGY 1 cut(s) 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 484
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.