Rh6BG029200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000792
Physical Location & Seq
Forward (+)
4391713 .. 4394358
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG029200.1

Sequence Viewer

Length: 981 bp
ATGGAGGATCCCTTCTTTGTCAACCAGTGGCACATGAACTCTCTCGATGAGCTCAGCATGCTACCATTATCAGCTGCCTTTGGAGAGAATTTGCAACAGTCTCACTGCCACCCGATTTTAAACCCTAAATCTTCTACCAATACTTCTCTGAGTTCCATTAATGATAGACCCATGAAACAGCTCAAACCCAACAACTGGAATCCATCGAACCACCAGTTTACTTCCTTGCCAAACCTTCTCTCCTTTGTCAATTCATACAACACAAACCAAGTGGGGGTTGTTAAGCCTAAGGAGGAGACGGCAGTATGTTCAAGGAACATCAACCATTTCCCTTCTGATATATTGGTTTCTCAAGGTTCATTTGGCAACCAAAACTCTTCATTGAAGGCCAGTCAGGGAACAAACAGAATCAACACAAACACTAGGCTTTCGCAAACTCAAGATCACATAATTGCAGAAAGGAAGCGGCGAGAGAAGCTTAGTCAACGGTTCATTGCTTTATCTGCAATGGTTCCTGGCTTAAAAAAGACGGACAAGGCTTCTGTTCTAGGAGATTCTATCAAGTACATCAAGCAACTACAGGAGAAGGTAAAGACACTTGAGGAGCAGACGAGAGTGAAAAAGATGGAATCAGTCGTCTCTGTGAAAAGATCACAGCTCAATATTGCAAATGATGATAACTCTTCTTCGGACGATAACACCTCCAGTGTTTCATTTGAGGAGACACTGCCAGAAATTGAAGCAAGATTCTGTGACAACAATGTCCTGATAAGAGTTCACTGTGAGAAAAGAAAAGGAGTTGTTGAAAAAACAATTGCTGAGGTTGAGAAGCTGCAACTAAAATTGATCAATAGCAGTGTCATGACATTTGGTAGTTCTGTTCTTGATGTAACCATTGTTGCTCAGATGGAAGTGGAATTCTGTCTCTCAGTGAAGGATGTCGTCAAGAATCTACGCTCAGCTTTCGACTTGTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

326

Amino Acids

36.66

Weight (kDa)

8.51

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 148 - 194 5.9e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 761
AccB7I CCANNNNNTGG 1 cut(s) 195
AciI CCGC 1 cut(s) 466
AclWI GGATC 2 cut(s) 2, 15
AcsI RAATTY 2 cut(s) 88, 917
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 2 cut(s) 195, 274
AgsI TTSAA 4 cut(s) 312, 385, 740, 806
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 7 cut(s) 52, 74, 181, 478, 658, 832, 962
AluI AGCT 7 cut(s) 52, 74, 181, 478, 658, 832, 962
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 5 cut(s) 105, 290, 643, 716, 929
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 74, 832
ApoI RAATTY 2 cut(s) 88, 917
AseI ATTAAT 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 288
BamHI GGATCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 2 cut(s) 61, 819
BccI CCATC 3 cut(s) 211, 619, 901
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 1 cut(s) 516
BclI TGATCA 1 cut(s) 846
BcoDI GTCTC 5 cut(s) 105, 290, 643, 716, 929
BfaI CTAG 2 cut(s) 423, 548
BfmI CTRYAG 1 cut(s) 578
BisI GCNGC 3 cut(s) 75, 467, 833
BlpI GCTNAGC 2 cut(s) 53, 958
BlsI GCNGC 3 cut(s) 76, 468, 834
Bme1390I CCNGG 1 cut(s) 516
BmiI GGNNCC 2 cut(s) 9, 513
BmrFI CCNGG 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 688
Bpu10I CCTNAGC 1 cut(s) 819
Bpu1102I GCTNAGC 2 cut(s) 53, 958
BpuEI CTTGAG 3 cut(s) 336, 423, 620
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 274
Bse1I ACTGG 5 cut(s) 25, 200, 214, 390, 705
Bse21I CCTNAGG 1 cut(s) 288
Bse3DI GCAATG 2 cut(s) 492, 513
BseBI CCWGG 1 cut(s) 516
BseGI GGATG 1 cut(s) 943
BseLI CCNNNNNNNGG 2 cut(s) 195, 274
BseMI GCAATG 2 cut(s) 492, 513
BseMII CTCAG 6 cut(s) 67, 140, 810, 917, 942, 972
BseNI ACTGG 5 cut(s) 25, 200, 214, 390, 705
BseRI GAGGAG 3 cut(s) 308, 617, 734
BseXI GCAGC 2 cut(s) 61, 819
BshFI GGCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 195, 274
BsmAI GTCTC 5 cut(s) 105, 290, 643, 716, 929
BsmBI CGTCTC 2 cut(s) 290, 643
BsnI GGCC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 4 cut(s) 7, 442, 650, 846
Bsp1720I GCTNAGC 2 cut(s) 53, 958
BspACI CCGC 1 cut(s) 466
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 6 cut(s) 66, 141, 811, 916, 941, 971
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 2 cut(s) 9, 513
BspPI GGATC 2 cut(s) 2, 15
BsrDI GCAATG 2 cut(s) 492, 513
BsrI ACTGG 5 cut(s) 25, 200, 214, 390, 705
BssMI GATC 4 cut(s) 7, 442, 650, 846
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 3 cut(s) 99, 489, 782
Bst6I CTCTTC 2 cut(s) 382, 688
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 8 cut(s) 53, 149, 288, 479, 819, 903, 928, 958
BstF5I GGATG 1 cut(s) 943
BstKTI GATC 4 cut(s) 10, 445, 653, 849
BstMAI GTCTC 5 cut(s) 105, 290, 643, 716, 929
BstMBI GATC 4 cut(s) 7, 442, 650, 846
BstMWI GCNNNNNNNGC 3 cut(s) 58, 475, 503
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 578
BstV1I GCAGC 2 cut(s) 61, 819
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 1 cut(s) 389
BtsCI GGATG 1 cut(s) 943
BtsI GCAGTG 3 cut(s) 103, 725, 862
BtsIMutI CAGTG 7 cut(s) 32, 103, 712, 725, 778, 862, 936
Cac8I GCNNGC 1 cut(s) 59
CciI TCATGA 1 cut(s) 861
Csp6I GTAC 1 cut(s) 565
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 5 cut(s) 34, 58, 172, 862, 976
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 8 cut(s) 53, 149, 288, 479, 819, 903, 928, 958
DpnI GATC 4 cut(s) 9, 444, 652, 848
DpnII GATC 4 cut(s) 7, 442, 650, 846
DraI TTTAAA 1 cut(s) 120
DrdI GACNNNNNNGTC 1 cut(s) 761
DseDI GACNNNNNNGTC 1 cut(s) 761
Eam1104I CTCTTC 2 cut(s) 382, 688
EarI CTCTTC 2 cut(s) 382, 688
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
Eco81I CCTNAGG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 917
EcoRII CCWGG 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 54
Esp3I CGTCTC 2 cut(s) 290, 643
FaeI CATG 5 cut(s) 37, 61, 175, 865, 979
FaiI YATR 9 cut(s) 35, 59, 173, 256, 307, 341, 449, 863, 977
FatI CATG 5 cut(s) 33, 57, 171, 861, 975
FbaI TGATCA 1 cut(s) 846
Fnu4HI GCNGC 3 cut(s) 75, 467, 833
FokI GGATG 1 cut(s) 950
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 75, 467, 833
FspBI CTAG 2 cut(s) 423, 548
GluI GCNGC 3 cut(s) 75, 467, 833
GsuI CTGGAG 1 cut(s) 688
HaeIII GGCC 1 cut(s) 389
Hin1II CATG 5 cut(s) 37, 61, 175, 865, 979
HincII GTYRAC 2 cut(s) 22, 485
HindII GTYRAC 2 cut(s) 22, 485
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 6 cut(s) 199, 408, 554, 629, 747, 949
Hpy166II GTNNAC 4 cut(s) 22, 219, 485, 778
Hpy188I TCNGA 4 cut(s) 150, 337, 691, 906
Hpy188III TCNNGA 6 cut(s) 44, 440, 766, 862, 884, 946
Hpy8I GTNNAC 4 cut(s) 22, 219, 485, 778
HpyAV CCTTC 6 cut(s) 22, 245, 342, 379, 580, 928
HpyCH4III ACNGT 3 cut(s) 99, 489, 782
HpyCH4V TGCA 5 cut(s) 94, 455, 506, 668, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 475, 503
HpyF3I CTNAG 8 cut(s) 53, 149, 288, 479, 819, 903, 928, 958
Hsp92II CATG 5 cut(s) 37, 61, 175, 865, 979
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 4 cut(s) 7, 442, 650, 846
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 2 cut(s) 61, 819
MaeI CTAG 2 cut(s) 423, 548
MaeIII GTNAC 2 cut(s) 752, 889
MalI GATC 4 cut(s) 9, 444, 652, 848
MboI GATC 4 cut(s) 7, 442, 650, 846
MboII GAAGA 4 cut(s) 123, 369, 675, 678
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 7 cut(s) 88, 250, 450, 735, 813, 842, 917
MnlI CCTC 5 cut(s) 286, 595, 712, 712, 814
MseI TTAA 4 cut(s) 119, 159, 282, 521
MspA1I CMGCKG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 1 cut(s) 813
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 3 cut(s) 58, 475, 503
NdeII GATC 4 cut(s) 7, 442, 650, 846
NlaIII CATG 5 cut(s) 37, 61, 175, 865, 979
NlaIV GGNNCC 2 cut(s) 9, 513
NmuCI GTSAC 1 cut(s) 752
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 861
PfeI GAWTC 6 cut(s) 199, 408, 554, 629, 747, 949
PflMI CCANNNNNTGG 1 cut(s) 195
PkrI GCNGC 3 cut(s) 76, 468, 834
PshBI ATTAAT 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 9, 513
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 4 cut(s) 119, 159, 282, 521
SatI GCNGC 3 cut(s) 75, 467, 833
Sau3AI GATC 4 cut(s) 7, 442, 650, 846
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 578
SmlI CTYRAG 3 cut(s) 351, 438, 599
SmoI CTYRAG 3 cut(s) 351, 438, 599
SphI GCATGC 1 cut(s) 61
Sse9I AATT 7 cut(s) 88, 250, 450, 735, 813, 842, 917
SsiI CCGC 1 cut(s) 466
SspI AATATT 1 cut(s) 664
SspMI CTAG 2 cut(s) 423, 548
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 514
TaaI ACNGT 3 cut(s) 99, 489, 782
TaqI TCGA 3 cut(s) 45, 206, 966
TasI AATT 7 cut(s) 88, 250, 450, 735, 813, 842, 917
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 469
TfiI GAWTC 6 cut(s) 199, 408, 554, 629, 747, 949
Tru1I TTAA 4 cut(s) 119, 159, 282, 521
Tru9I TTAA 4 cut(s) 119, 159, 282, 521
TscAI CASTG 7 cut(s) 32, 110, 712, 732, 785, 862, 936
TseFI GTSAC 1 cut(s) 752
TseI GCWGC 2 cut(s) 74, 832
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 8 cut(s) 50, 188, 243, 348, 369, 481, 702, 964
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 7 cut(s) 32, 110, 712, 732, 785, 862, 936
Van91I CCANNNNNTGG 1 cut(s) 195
VspI ATTAAT 1 cut(s) 159
XapI RAATTY 2 cut(s) 88, 917
XceI RCATGY 1 cut(s) 61
XspI CTAG 2 cut(s) 423, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.