Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000332.1

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

267509 .. 269941

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000332.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgaaaggtaaagctaccctcatcaaccacaaccacaaccacaagaaaaggaggatcctttgttccataatctttattcatataatggacgtatcatcagcaaaatggttttcggatttgggaatggatgattacaacttcattcatgaagggtttacagcacaggacatagcaactgcccttggggaaaatttcaaacaatccttctccaatgagagttattcctcttacccaactttgactacccaaaaatcccccaacaccacattaagtggtggttcatctatcaatgagactaattctcagacgagctttgagagaccagccaaactggtcaagaccaacagctggaactctgccattacagaacatgtttcaccaaagccttcttgcaattcttcatcctcccacattctttctttcgagaacacgaatttgaattcttcaccaccttccaagcctcatcaacagttctctaatggttttgacactaccctgaggccaaaggatgaggcaccatccgaaatatgtatgcagtttgagaaccaaggctatgggactaataagaggccttactcaatgactagaactccttctcatgctcaagaccacataatggctgagaggaagagaagagaaaagctcagtcagagattcattgctctttccgccattgttcctggactaaaaaagatggacaaagcttctgttcttggagatgcaatcaagtatgtgaaacagctccaagaaagtgtcaaagttcttgaggaacaaaccaagaagagaaccgtggaatccgtggtgtttgtgaagaagtctcagctggtctcttctgatgatgacacttcttcatgtgatgagaactttgatggtcgcagctctgatgaatggctcccgcaaattgaagcaagagtttcagagaaggatgtattgattcgaattcactgcgagaaccagaaaggatatgtggtgaaaattctaagcgaaatagaaaagcttcaactatctgtggttaatagcagtgtcttgccatttggaaagtccactctagacataaccattattgctcagatggataatgaatgcaacatcacggtaacggatcttgccaaaagcttgagagtggctctattgaagttcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

381

Amino Acids

42.75

Weight (kDa)

8.38

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	514
AccB7I	CCANNNNNTGG	2 cut(s)	348, 616
AciI	CCGC	2 cut(s)	669, 896
AclWI	GGATC	3 cut(s)	49, 62, 1110
AcsI	RAATTY	5 cut(s)	190, 433, 439, 939, 975
AfiI	CCNNNNNNNGG	2 cut(s)	348, 616
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	5 cut(s)	196, 439, 905, 1001, 1135
AjnI	CCWGG	1 cut(s)	679
AloI	GAACNNNNNNTCC	2 cut(s)	46, 78
Alw26I	GTCTC	4 cut(s)	287, 313, 822, 832
AlwI	GGATC	3 cut(s)	49, 62, 1110
AoxI	GGCC	2 cut(s)	500, 569
ApeKI	GCWGC	1 cut(s)	876
ApoI	RAATTY	5 cut(s)	190, 433, 439, 939, 975
Asp700I	GAANNNNTTC	2 cut(s)	592, 996
AsuHPI	GGTGA	3 cut(s)	369, 438, 982
AsuII	TTCGAA	1 cut(s)	937
AxyI	CCTNAGG	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	888
BccI	CCATC	4 cut(s)	526, 688, 863, 1066
BcgI	CGANNNNNNTGC	2 cut(s)	927, 961
BciT130I	CCWGG	1 cut(s)	681
BcoDI	GTCTC	4 cut(s)	287, 313, 822, 832
BfaI	CTAG	2 cut(s)	585, 1049
BisI	GCNGC	1 cut(s)	877
BlsI	GCNGC	1 cut(s)	878
Bme1390I	CCNGG	1 cut(s)	681
BmiI	GGNNCC	3 cut(s)	56, 516, 893
BmrFI	CCNGG	1 cut(s)	681
BmsI	GCATC	1 cut(s)	709
BplI	GAGNNNNNCTC	4 cut(s)	627, 659, 1111, 1143
Bpu14I	TTCGAA	1 cut(s)	937
BpuEI	CTTGAG	3 cut(s)	588, 785, 1138
BsaI	GGTCTC	2 cut(s)	313, 832
BsaJI	CCNNGG	4 cut(s)	181, 547, 789, 798
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 616
Bse1I	ACTGG	1 cut(s)	336
Bse21I	CCTNAGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	4 cut(s)	181, 547, 789, 798
BseGI	GGATG	5 cut(s)	133, 401, 514, 518, 931
BseLI	CCNNNNNNNGG	2 cut(s)	348, 616
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	6 cut(s)	317, 488, 612, 658, 833, 1082
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	888
BshFI	GGCC	2 cut(s)	502, 571
BshNI	GGYRCC	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	2 cut(s)	348, 616
BsmAI	GTCTC	4 cut(s)	287, 313, 822, 832
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	1088
BsnI	GGCC	2 cut(s)	502, 571
Bso31I	GGTCTC	2 cut(s)	313, 832
Bsp119I	TTCGAA	1 cut(s)	937
Bsp143I	GATC	2 cut(s)	54, 1102
BspACI	CCGC	2 cut(s)	669, 896
BspANI	GGCC	2 cut(s)	502, 571
BspCNI	CTCAG	6 cut(s)	316, 489, 613, 657, 832, 1081
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	3 cut(s)	56, 516, 893
BspPI	GGATC	3 cut(s)	49, 62, 1110
BspT104I	TTCGAA	1 cut(s)	937
BspT107I	GGYRCC	1 cut(s)	514
BspTNI	GGTCTC	2 cut(s)	313, 832
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	4 cut(s)	181, 547, 789, 798
BssMI	GATC	2 cut(s)	54, 1102
BssT1I	CCWWGG	2 cut(s)	181, 547
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	3 cut(s)	471, 790, 1096
Bst6I	CTCTTC	4 cut(s)	623, 628, 776, 835
BstBI	TTCGAA	1 cut(s)	937
BstDEI	CTNAG	7 cut(s)	303, 497, 621, 644, 819, 980, 1068
BstDSI	CCRYGG	2 cut(s)	789, 798
BstF5I	GGATG	5 cut(s)	133, 401, 514, 518, 931
BstKTI	GATC	2 cut(s)	57, 1105
BstMAI	GTCTC	4 cut(s)	287, 313, 822, 832
BstMBI	GATC	2 cut(s)	54, 1102
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	679
BstV1I	GCAGC	1 cut(s)	888
BstX2I	RGATCY	2 cut(s)	54, 1102
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	2 cut(s)	54, 1102
Bsu36I	CCTNAGG	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	502, 571
BtgI	CCRYGG	2 cut(s)	789, 798
BtsCI	GGATG	5 cut(s)	133, 401, 514, 518, 931
BtsI	GCAGTG	2 cut(s)	943, 1027
BtsIMutI	CAGTG	2 cut(s)	943, 1027
CciI	TCATGA	1 cut(s)	145
CviAII	CATG	5 cut(s)	146, 371, 599, 852, 1141
DdeI	CTNAG	7 cut(s)	303, 497, 621, 644, 819, 980, 1068
DpnI	GATC	2 cut(s)	56, 1104
DpnII	GATC	2 cut(s)	54, 1102
Eam1104I	CTCTTC	4 cut(s)	623, 628, 776, 835
EarI	CTCTTC	4 cut(s)	623, 628, 776, 835
EciI	GGCGGA	1 cut(s)	658
Eco130I	CCWWGG	2 cut(s)	181, 547
Eco147I	AGGCCT	1 cut(s)	571
Eco31I	GGTCTC	2 cut(s)	313, 832
Eco81I	CCTNAGG	1 cut(s)	497
EcoRI	GAATTC	2 cut(s)	439, 939
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	181, 547
ErhI	CCWWGG	2 cut(s)	181, 547
FaeI	CATG	5 cut(s)	149, 374, 602, 855, 1144
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	5 cut(s)	145, 370, 598, 851, 1140
FauI	CCCGC	1 cut(s)	903
Fnu4HI	GCNGC	1 cut(s)	877
FokI	GGATG	5 cut(s)	140, 388, 505, 521, 938
Fsp4HI	GCNGC	1 cut(s)	877
FspBI	CTAG	2 cut(s)	585, 1049
GluI	GCNGC	1 cut(s)	877
HaeIII	GGCC	2 cut(s)	502, 571
Hin1II	CATG	5 cut(s)	149, 374, 602, 855, 1144
HindIII	AAGCTT	3 cut(s)	702, 995, 1114
HinfI	GANTC	3 cut(s)	654, 794, 934
HphI	GGTGA	3 cut(s)	369, 438, 982
Hpy166II	GTNNAC	2 cut(s)	156, 1044
Hpy188I	TCNGA	8 cut(s)	115, 306, 523, 651, 835, 883, 919, 1071
Hpy188III	TCNNGA	6 cut(s)	146, 337, 424, 605, 764, 1049
Hpy8I	GTNNAC	2 cut(s)	156, 1044
HpyAV	CCTTC	6 cut(s)	143, 214, 396, 462, 603, 916
HpyCH4III	ACNGT	3 cut(s)	471, 790, 1096
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	393, 535, 722, 1086
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	7 cut(s)	303, 497, 621, 644, 819, 980, 1068
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	149, 374, 602, 855, 1144
Kzo9I	GATC	2 cut(s)	54, 1102
LmnI	GCTCC	2 cut(s)	747, 897
LpnPI	CCDG	9 cut(s)	149, 317, 334, 336, 509, 666, 693, 809, 968
Lsp1109I	GCAGC	1 cut(s)	888
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	2 cut(s)	585, 1049
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	1096
MalI	GATC	2 cut(s)	56, 1104
MboI	GATC	2 cut(s)	54, 1102
MboII	GAAGA	8 cut(s)	390, 435, 640, 645, 793, 822, 823, 840
MflI	RGATCY	2 cut(s)	54, 1102
MluCI	AATT	8 cut(s)	190, 298, 394, 433, 439, 900, 939, 975
MroXI	GAANNNNTTC	2 cut(s)	592, 996
MseI	TTAA	2 cut(s)	269, 1014
MspA1I	CMGCKG	2 cut(s)	348, 823
MspR9I	CCNGG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	1088
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	1 cut(s)	668
NdeII	GATC	2 cut(s)	54, 1102
NlaIII	CATG	5 cut(s)	149, 374, 602, 855, 1144
NlaIV	GGNNCC	3 cut(s)	56, 516, 893
NspI	RCATGY	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	937
PagI	TCATGA	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	571
PciI	ACATGT	1 cut(s)	370
PctI	GAATGC	1 cut(s)	1088
PdmI	GAANNNNTTC	2 cut(s)	592, 996
PfeI	GAWTC	3 cut(s)	654, 794, 934
PflMI	CCANNNNNTGG	2 cut(s)	348, 616
PfoI	TCCNGGA	1 cut(s)	679
PkrI	GCNGC	1 cut(s)	878
PscI	ACATGT	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	3 cut(s)	56, 516, 893
PsuI	RGATCY	2 cut(s)	54, 1102
PvuII	CAGCTG	2 cut(s)	348, 823
SaqAI	TTAA	2 cut(s)	269, 1014
SatI	GCNGC	1 cut(s)	877
Sau3AI	GATC	2 cut(s)	54, 1102
ScrFI	CCNGG	1 cut(s)	681
SfaNI	GCATC	1 cut(s)	709
SfuI	TTCGAA	1 cut(s)	937
SmlI	CTYRAG	3 cut(s)	603, 764, 1117
SmoI	CTYRAG	3 cut(s)	603, 764, 1117
Sse9I	AATT	8 cut(s)	190, 298, 394, 433, 439, 900, 939, 975
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	2 cut(s)	669, 896
SspMI	CTAG	2 cut(s)	585, 1049
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	1 cut(s)	679
StyI	CCWWGG	2 cut(s)	181, 547
TaaI	ACNGT	3 cut(s)	471, 790, 1096
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	423, 937
TasI	AATT	8 cut(s)	190, 298, 394, 433, 439, 900, 939, 975
TfiI	GAWTC	3 cut(s)	654, 794, 934
Tru1I	TTAA	2 cut(s)	269, 1014
Tru9I	TTAA	2 cut(s)	269, 1014
TscAI	CASTG	2 cut(s)	950, 1027
TseI	GCWGC	1 cut(s)	876
TspGWI	ACGGA	2 cut(s)	787, 1115
TspRI	CASTG	2 cut(s)	950, 1027
Van91I	CCANNNNNTGG	2 cut(s)	348, 616
XapI	RAATTY	5 cut(s)	190, 433, 439, 939, 975
XbaI	TCTAGA	1 cut(s)	1048
XceI	RCATGY	1 cut(s)	374
XmnI	GAANNNNTTC	2 cut(s)	592, 996
XspI	CTAG	2 cut(s)	585, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.