FvH4_2g02340

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000792
Physical Location & Seq
Forward (+)
1921543 .. 1924044
2502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02340.t2

Sequence Viewer

Length: 999 bp
ATGGAGATTTCGTCGATAGGAGGACTAACTGAATTGGGAATGGAGGATTCCTTCTTCATCAACCAGTGGCACATGAACTCTCTCGATGAGCTCAGCATGCTCCCATTAGCAGCTGCCTTTGGAGAGAATTTGCAGCACTCTCACTGTCACCCGATTCTTAATCCTAAAACTTCTACAAATACTTCTCAGAATTCCATTGATAGACCCATGAAACAGCTCAAACCCAACAACTGGAGTCCACCGAACCCTCAGTTTGCTGCCTTGCCAAACCTTCTCTCCTTTGTCAATTCTTGCAACACAAACCAAGTGGGGGTTGCTAAACCTAAGGAGGAGAAGACACTATGCTCAAAGAGCATCAACAACCATCTCCCTTCTGATGTATTGGTTTCTCAAGCTTCATTTGGCAACCAAAATTCTTTATTGAAGGCCGGTCATGGAACAAACAGGATCAGCACAAACACTAGGCTTTCGCAAACTCAAGTTCATATAATGGCAGAAAGGAAGCGGCGAGAGAAGCTTAGTCAACAGTTTATTGCTTTATCTGCAATGGTTCCTGGCCTAAAAAAGACAGACAAGGCTTCGGTTCTTGGAGATGCTATCAAGTACATCAAGCAACTACAGGAGAAGCTAAAGATACTTGAGGAGCAGACTAGAGTGAAAAAGATGGAAACGGTTGTCTCTGTGAAAAGATCACATCTCATTGCAAATGGTGATAACAACTCCACTGTGTCGTTTGAGGAGACATTGCCACAAATTGAAGCAAGATTCTGTGACAACAATGTCCTGATTAGAGTTCATTGTGAGAAAAGAAAAGGAGTTGTAGAAAAAACAATTGCTGAAGTAGAAAAACTGCAACTAAAGTTGATCAATAGCAGTGTCATGACATTTGGTAGTTCTGTTGTTGATGTAACCATTGTTGCTCAGATGGAAGTGGAATTCTGTCTCACAGTGAAGGACCTCGTCAAGAATCTACGCTCAGCTTTCGACTTGTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

333

Amino Acids

37.04

Weight (kDa)

8.94

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 160 - 207 1.1e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 231
AciI CCGC 1 cut(s) 505
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 4 cut(s) 127, 190, 412, 935
AcuI CTGAAG 1 cut(s) 858
AfaI GTAC 1 cut(s) 605
AfiI CCNNNNNNNGG 2 cut(s) 231, 310
AgsI TTSAA 2 cut(s) 424, 758
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 7 cut(s) 91, 113, 217, 395, 517, 628, 980
AluI AGCT 7 cut(s) 91, 113, 217, 395, 517, 628, 980
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 3 cut(s) 682, 734, 947
AlwI GGATC 1 cut(s) 455
AoxI GGCC 2 cut(s) 426, 556
ApeKI GCWGC 4 cut(s) 110, 113, 133, 257
ApoI RAATTY 4 cut(s) 127, 190, 412, 935
AspS9I GGNCC 1 cut(s) 955
AsuHPI GGTGA 2 cut(s) 140, 722
AvaII GGWCC 1 cut(s) 955
AxyI CCTNAGG 1 cut(s) 324
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 4 cut(s) 100, 122, 145, 244
BccI CCATC 3 cut(s) 372, 658, 919
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 864
BcoDI GTCTC 3 cut(s) 682, 734, 947
BfaI CTAG 2 cut(s) 462, 651
BfmI CTRYAG 1 cut(s) 617
BisI GCNGC 5 cut(s) 111, 114, 134, 258, 506
BlpI GCTNAGC 2 cut(s) 92, 976
BlsI GCNGC 5 cut(s) 112, 115, 135, 259, 507
Bme1390I CCNGG 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 955
BmgT120I GGNCC 1 cut(s) 955
BmiI GGNNCC 1 cut(s) 552
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 2 cut(s) 363, 583
BpiI GAAGAC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 253
Bpu1102I GCTNAGC 2 cut(s) 92, 976
BpuEI CTTGAG 3 cut(s) 375, 462, 659
BsaXI ACNNNNNCTCC 3 cut(s) 26, 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 310
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 64, 236
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 3 cut(s) 552, 699, 743
BseBI CCWGG 1 cut(s) 555
BseLI CCNNNNNNNGG 2 cut(s) 231, 310
BseMI GCAATG 3 cut(s) 552, 699, 743
BseMII CTCAG 5 cut(s) 106, 200, 263, 935, 990
BseNI ACTGG 2 cut(s) 64, 236
BseRI GAGGAG 3 cut(s) 344, 656, 752
BseXI GCAGC 4 cut(s) 100, 122, 145, 244
BshFI GGCC 2 cut(s) 428, 558
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 231, 310
BsmAI GTCTC 3 cut(s) 682, 734, 947
BsnI GGCC 2 cut(s) 428, 558
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 3 cut(s) 447, 689, 864
Bsp1720I GCTNAGC 2 cut(s) 92, 976
BspACI CCGC 1 cut(s) 505
BspANI GGCC 2 cut(s) 428, 558
BspCNI CTCAG 5 cut(s) 105, 199, 262, 934, 989
BspHI TCATGA 1 cut(s) 879
BspLI GGNNCC 1 cut(s) 552
BspPI GGATC 1 cut(s) 455
BsrDI GCAATG 3 cut(s) 552, 699, 743
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 2 cut(s) 64, 236
BssAI RCCGGY 1 cut(s) 428
BssMI GATC 3 cut(s) 447, 689, 864
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 5 cut(s) 146, 528, 673, 727, 949
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 7 cut(s) 92, 186, 249, 324, 518, 921, 976
BstKTI GATC 3 cut(s) 450, 692, 867
BstMAI GTCTC 3 cut(s) 682, 734, 947
BstMBI GATC 3 cut(s) 447, 689, 864
BstMWI GCNNNNNNNGC 4 cut(s) 97, 351, 514, 542
BstNI CCWGG 1 cut(s) 555
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 617
BstV1I GCAGC 4 cut(s) 100, 122, 145, 244
BstV2I GAAGAC 1 cut(s) 341
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 428, 558
BtsI GCAGTG 1 cut(s) 880
BtsIMutI CAGTG 5 cut(s) 71, 142, 723, 880, 954
Cac8I GCNNGC 1 cut(s) 98
CciI TCATGA 1 cut(s) 879
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 955
Csp6I GTAC 1 cut(s) 604
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 6 cut(s) 73, 97, 208, 434, 880, 994
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 7 cut(s) 92, 186, 249, 324, 518, 921, 976
DpnI GATC 3 cut(s) 449, 691, 866
DpnII GATC 3 cut(s) 447, 689, 864
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 955
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 858
Eco81I CCTNAGG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 955
EcoRI GAATTC 2 cut(s) 190, 935
EcoRII CCWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 6 cut(s) 76, 100, 211, 437, 883, 997
FaiI YATR 9 cut(s) 74, 98, 209, 343, 435, 486, 488, 881, 995
FatI CATG 6 cut(s) 72, 96, 207, 433, 879, 993
FbaI TGATCA 1 cut(s) 864
Fnu4HI GCNGC 5 cut(s) 111, 114, 134, 258, 506
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 5 cut(s) 111, 114, 134, 258, 506
FspBI CTAG 2 cut(s) 462, 651
GluI GCNGC 5 cut(s) 111, 114, 134, 258, 506
GsuI CTGGAG 1 cut(s) 253
HaeIII GGCC 2 cut(s) 428, 558
HapII CCGG 1 cut(s) 429
Hin1II CATG 6 cut(s) 76, 100, 211, 437, 883, 997
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HindIII AAGCTT 2 cut(s) 393, 515
HinfI GANTC 5 cut(s) 47, 154, 235, 765, 967
HpaII CCGG 1 cut(s) 429
HphI GGTGA 2 cut(s) 140, 722
Hpy166II GTNNAC 2 cut(s) 239, 524
Hpy188I TCNGA 3 cut(s) 189, 376, 924
Hpy188III TCNNGA 4 cut(s) 83, 784, 880, 964
Hpy8I GTNNAC 2 cut(s) 239, 524
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 5 cut(s) 61, 281, 381, 418, 946
HpyCH4III ACNGT 5 cut(s) 146, 528, 673, 727, 949
HpyCH4V TGCA 5 cut(s) 133, 294, 545, 704, 853
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 351, 514, 542
HpyF3I CTNAG 7 cut(s) 92, 186, 249, 324, 518, 921, 976
Hsp92II CATG 6 cut(s) 76, 100, 211, 437, 883, 997
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 3 cut(s) 447, 689, 864
LmnI GCTCC 2 cut(s) 105, 643
LpnPI CCDG 8 cut(s) 77, 217, 430, 442, 540, 567, 605, 797
Lsp1109I GCAGC 4 cut(s) 100, 122, 145, 244
LweI GCATC 2 cut(s) 363, 583
MaeI CTAG 2 cut(s) 462, 651
MaeIII GTNAC 3 cut(s) 146, 770, 907
MalI GATC 3 cut(s) 449, 691, 866
MboI GATC 3 cut(s) 447, 689, 864
MboII GAAGA 2 cut(s) 46, 346
MfeI CAATTG 1 cut(s) 831
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 8 cut(s) 32, 127, 190, 286, 412, 753, 831, 935
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 7 cut(s) 14, 37, 258, 322, 634, 730, 968
MseI TTAA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 555
MunI CAATTG 1 cut(s) 831
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 4 cut(s) 97, 351, 514, 542
NdeII GATC 3 cut(s) 447, 689, 864
NlaIII CATG 6 cut(s) 76, 100, 211, 437, 883, 997
NlaIV GGNNCC 1 cut(s) 552
NmuCI GTSAC 2 cut(s) 146, 770
NspI RCATGY 1 cut(s) 100
PaeI GCATGC 1 cut(s) 100
PagI TCATGA 1 cut(s) 879
PfeI GAWTC 4 cut(s) 47, 154, 765, 967
PflFI GACNNNGTC 1 cut(s) 959
PflMI CCANNNNNTGG 1 cut(s) 231
PkrI GCNGC 5 cut(s) 112, 115, 135, 259, 507
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PpuMI RGGWCCY 1 cut(s) 955
Psp124BI GAGCTC 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 955
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 1 cut(s) 955
PspPPI RGGWCCY 1 cut(s) 955
PsyI GACNNNGTC 1 cut(s) 959
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 5 cut(s) 111, 114, 134, 258, 506
Sau3AI GATC 3 cut(s) 447, 689, 864
Sau96I GGNCC 1 cut(s) 955
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 2 cut(s) 363, 583
SfcI CTRYAG 1 cut(s) 617
SinI GGWCC 1 cut(s) 955
SmlI CTYRAG 3 cut(s) 390, 477, 638
SmoI CTYRAG 3 cut(s) 390, 477, 638
SphI GCATGC 1 cut(s) 100
Sse9I AATT 8 cut(s) 32, 127, 190, 286, 412, 753, 831, 935
SsiI CCGC 1 cut(s) 505
SspMI CTAG 2 cut(s) 462, 651
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 5 cut(s) 146, 528, 673, 727, 949
TaqI TCGA 3 cut(s) 14, 84, 984
TasI AATT 8 cut(s) 32, 127, 190, 286, 412, 753, 831, 935
TatI WGTACW 1 cut(s) 603
TauI GCSGC 1 cut(s) 508
TfiI GAWTC 4 cut(s) 47, 154, 765, 967
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 5 cut(s) 71, 149, 730, 880, 954
TseFI GTSAC 2 cut(s) 146, 770
TseI GCWGC 4 cut(s) 110, 113, 133, 257
Tsp45I GTSAC 2 cut(s) 146, 770
TspDTI ATGAA 7 cut(s) 46, 89, 224, 387, 473, 785, 982
TspRI CASTG 5 cut(s) 71, 149, 730, 880, 954
Tth111I GACNNNGTC 1 cut(s) 959
Van91I CCANNNNNTGG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 955
XapI RAATTY 4 cut(s) 127, 190, 412, 935
XceI RCATGY 1 cut(s) 100
XspI CTAG 2 cut(s) 462, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.