Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

11037264 .. 11039331

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGATGATTTCATCAGCAAAATGGGTATCTGAATTGGAAATGGAAGATCCCACATTCCTGAATCAGTATGAAATGAACTTTCATCTGGACTACTCACTTGAAGATCTCAATTTCCGGTCTTTATCTGCTGAGAGCTACTCGTCTTACCCAGATTTTACCCCTCCACAAAATGATGTTGATGAAAGGCCAGCAAAACAGCCGAAAAATAACCACAGTAACTGGAACTCTTGCACTACCACTCATGATCACAAAACTACAGTCCCAAGGGCTTCCTCTTCTGCCTCCTCGCACCTAATTTCTTTTGACAATTCCAACTCGTCAGCATATGGTTCTCTTGATTGCACTACCACTGTGAAGCCAAAGAATGAGGTCCAGGGTTCTGGTGGAAATTTGAATTCCATTCCAACTTTGATTTCACAAGGTAATTCTTATGACCCCCAAACTTGTTCACCAAACCGTGCATATGGCCAAGGGATCAAGAGGGCTGCTACTGTCACTAGAAGTCCCTTACATGCTCAAGATCACGTTCTAGCTGAGCGAAAGCGCCGAGAAAAGCTCAGTCAGCGGTTCATCGCTCTATCAGCCCTAGTACCAGGTCTAAAGAAGATGGACAAGGCTTCAGTGCTTGGAGATGCCATAAAATATGTGAAACAGCTGCAAGAACGTATGAAGATTCTAGAGGAACAAGCGGCAAAGAAAACCGTGGAGTCAGTGGTGTTTGTGAAGAGAACTCAGTACTCTGCGGACGATGACATCTCCTCATCCGATGAGAACTTCGACAGCTGCTCGGACCAACCACTCCCTGAAATCGAAGCTAGGGTTTCAGACAAAGAGGTTCTCATCCGAATCCACTGTGAGAAAAAGAAAGGGTGTCTGGCAAACATACTACACGAAATAGAGAGGCTTAATCTCACCATTCTGAATAGCAGCTTCTTGCCCTTTGGCAATTCAACTCTTGATATCACTGTCGTTTCTCAGATGGACGTTGAGTACAGCATGACAGTGAAGGAACTTGTAAGTAAGCTGAGACAAGCTTTGCTCAAGTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

352

Amino Acids

39.32

Weight (kDa)

6.03

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	176 - 221	1.1e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	275 - 345	2.5e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	568, 692, 746
AclWI	GGATC	2 cut(s)	44, 485
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	2 cut(s)	391, 397
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	3 cut(s)	594, 740, 995
AgsI	TTSAA	3 cut(s)	104, 397, 954
AjnI	CCWGG	2 cut(s)	375, 595
AjuI	GAANNNNNNNTTGG	2 cut(s)	400, 432
AluBI	AGCT	9 cut(s)	138, 536, 559, 658, 786, 818, 933, 1027, 1037
AluI	AGCT	9 cut(s)	138, 536, 559, 658, 786, 818, 933, 1027, 1037
Alw26I	GTCTC	1 cut(s)	1024
AlwI	GGATC	2 cut(s)	44, 485
AlwNI	CAGNNNCTG	1 cut(s)	222
AoxI	GGCC	2 cut(s)	188, 469
ApeKI	GCWGC	4 cut(s)	488, 658, 786, 930
ApoI	RAATTY	2 cut(s)	391, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	2 cut(s)	373, 793
AsuHPI	GGTGA	2 cut(s)	444, 907
AvaII	GGWCC	2 cut(s)	373, 793
BalI	TGGCCA	1 cut(s)	471
BbvI	GCAGC	4 cut(s)	475, 645, 773, 942
BccI	CCATC	2 cut(s)	604, 976
BciT130I	CCWGG	2 cut(s)	377, 597
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	1024
BfaI	CTAG	5 cut(s)	501, 533, 590, 680, 819
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	550
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	5 cut(s)	489, 659, 693, 787, 931
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	5 cut(s)	490, 660, 694, 788, 932
BmcAI	AGTACT	1 cut(s)	740
Bme1390I	CCNGG	2 cut(s)	377, 597
Bme18I	GGWCC	2 cut(s)	373, 793
BmgT120I	GGNCC	2 cut(s)	373, 793
BmrFI	CCNGG	2 cut(s)	377, 597
BmsI	GCATC	1 cut(s)	625
BplI	GAGNNNNNCTC	4 cut(s)	125, 157, 543, 575
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	504, 1028
BsaJI	CCNNGG	4 cut(s)	266, 376, 472, 705
BsaWI	WCCGGW	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	377, 597
BseDI	CCNNGG	4 cut(s)	266, 376, 472, 705
BseGI	GGATG	2 cut(s)	764, 843
BseMII	CTCAG	6 cut(s)	123, 528, 574, 749, 992, 1019
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	277, 751
BseXI	GCAGC	4 cut(s)	475, 645, 773, 942
BshFI	GGCC	2 cut(s)	190, 471
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	248, 492
BsmAI	GTCTC	1 cut(s)	1024
BsmFI	GGGAC	2 cut(s)	248, 492
BsnI	GGCC	2 cut(s)	190, 471
Bsp143I	GATC	5 cut(s)	49, 106, 247, 477, 523
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	3 cut(s)	568, 692, 746
BspANI	GGCC	2 cut(s)	190, 471
BspCNI	CTCAG	6 cut(s)	124, 529, 573, 748, 991, 1020
BspHI	TCATGA	1 cut(s)	244
BspPI	GGATC	2 cut(s)	44, 485
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	4 cut(s)	266, 376, 472, 705
BssMI	GATC	5 cut(s)	49, 106, 247, 477, 523
BssT1I	CCWWGG	2 cut(s)	266, 472
Bst2UI	CCWGG	2 cut(s)	377, 597
Bst4CI	ACNGT	9 cut(s)	218, 262, 355, 461, 496, 706, 857, 970, 1006
Bst6I	CTCTTC	2 cut(s)	283, 722
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	6 cut(s)	132, 537, 560, 735, 978, 1028
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	2 cut(s)	764, 843
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	5 cut(s)	52, 109, 250, 480, 526
BstMAI	GTCTC	1 cut(s)	1024
BstMBI	GATC	5 cut(s)	49, 106, 247, 477, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	565, 584
BstNI	CCWGG	2 cut(s)	377, 597
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	375, 595
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	4 cut(s)	475, 645, 773, 942
BstX2I	RGATCY	2 cut(s)	49, 106
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	2 cut(s)	49, 106
BsuRI	GGCC	2 cut(s)	190, 471
BtgI	CCRYGG	1 cut(s)	705
BtgZI	GCGATG	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	764, 843
BtsIMutI	CAGTG	6 cut(s)	351, 630, 720, 853, 966, 1011
Cac8I	GCNNGC	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	222
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	549
Cfr13I	GGNCC	2 cut(s)	373, 793
CsiI	ACCWGGT	1 cut(s)	595
Csp6I	GTAC	3 cut(s)	593, 739, 994
CviAII	CATG	3 cut(s)	245, 515, 1000
CviQI	GTAC	3 cut(s)	593, 739, 994
DdeI	CTNAG	6 cut(s)	132, 537, 560, 735, 978, 1028
DpnI	GATC	5 cut(s)	51, 108, 249, 479, 525
DpnII	GATC	5 cut(s)	49, 106, 247, 477, 523
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	283, 722
EarI	CTCTTC	2 cut(s)	283, 722
Eco130I	CCWWGG	2 cut(s)	266, 472
Eco32I	GATATC	1 cut(s)	964
Eco47I	GGWCC	2 cut(s)	373, 793
Eco57I	CTGAAG	1 cut(s)	606
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	375, 595
EcoRV	GATATC	1 cut(s)	964
EcoT14I	CCWWGG	2 cut(s)	266, 472
ErhI	CCWWGG	2 cut(s)	266, 472
FaeI	CATG	3 cut(s)	248, 518, 1003
FaqI	GGGAC	2 cut(s)	248, 492
FatI	CATG	3 cut(s)	244, 514, 999
FauNDI	CATATG	2 cut(s)	328, 466
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	5 cut(s)	489, 659, 693, 787, 931
FokI	GGATG	2 cut(s)	751, 830
Fsp4HI	GCNGC	5 cut(s)	489, 659, 693, 787, 931
FspBI	CTAG	5 cut(s)	501, 533, 590, 680, 819
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	5 cut(s)	489, 659, 693, 787, 931
HaeII	RGCGCY	1 cut(s)	550
HaeIII	GGCC	2 cut(s)	190, 471
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	3 cut(s)	248, 518, 1003
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	1035
HinfI	GANTC	4 cut(s)	64, 676, 710, 849
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	2 cut(s)	444, 907
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	7 cut(s)	34, 769, 793, 829, 848, 924, 981
Hpy188III	TCNNGA	8 cut(s)	61, 89, 245, 338, 481, 521, 680, 959
Hpy8I	GTNNAC	1 cut(s)	452
HpyAV	CCTTC	1 cut(s)	1003
HpyCH4III	ACNGT	9 cut(s)	218, 262, 355, 461, 496, 706, 857, 970, 1006
HpyCH4IV	ACGT	3 cut(s)	528, 667, 987
HpyCH4V	TGCA	4 cut(s)	234, 345, 464, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	565, 584
HpyF3I	CTNAG	6 cut(s)	132, 537, 560, 735, 978, 1028
HpySE526I	ACGT	3 cut(s)	528, 667, 987
Hsp92II	CATG	3 cut(s)	248, 518, 1003
HspAI	GCGC	1 cut(s)	547
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	49, 106, 247, 477, 523
Lsp1109I	GCAGC	4 cut(s)	475, 645, 773, 942
LweI	GCATC	1 cut(s)	625
MabI	ACCWGGT	1 cut(s)	595
MaeI	CTAG	5 cut(s)	501, 533, 590, 680, 819
MaeII	ACGT	3 cut(s)	528, 667, 987
MaeIII	GTNAC	2 cut(s)	218, 496
MalI	GATC	5 cut(s)	51, 108, 249, 479, 525
MboI	GATC	5 cut(s)	49, 106, 247, 477, 523
MboII	GAAGA	6 cut(s)	59, 116, 270, 619, 685, 739
MflI	RGATCY	2 cut(s)	49, 106
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	8 cut(s)	35, 112, 297, 310, 391, 397, 427, 949
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	2 cut(s)	339, 431
Mox20I	TGGCCA	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	1 cut(s)	909
MslI	CAYNNNNRTG	1 cut(s)	1004
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	3 cut(s)	568, 658, 786
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	377, 597
MvaI	CCWGG	2 cut(s)	377, 597
MwoI	GCNNNNNNNGC	2 cut(s)	565, 584
NdeI	CATATG	2 cut(s)	328, 466
NdeII	GATC	5 cut(s)	49, 106, 247, 477, 523
NlaIII	CATG	3 cut(s)	248, 518, 1003
NmeAIII	GCCGAG	1 cut(s)	575
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	518
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	64, 676, 849
PkrI	GCNGC	5 cut(s)	490, 660, 694, 788, 932
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
Psp6I	CCWGG	2 cut(s)	375, 595
PspGI	CCWGG	2 cut(s)	375, 595
PspPI	GGNCC	2 cut(s)	373, 793
PstNI	CAGNNNCTG	1 cut(s)	222
PsuI	RGATCY	2 cut(s)	49, 106
PvuII	CAGCTG	2 cut(s)	658, 786
RsaI	GTAC	3 cut(s)	594, 740, 995
RsaNI	GTAC	3 cut(s)	593, 739, 994
RseI	CAYNNNNRTG	1 cut(s)	1004
SaqAI	TTAA	1 cut(s)	909
SatI	GCNGC	5 cut(s)	489, 659, 693, 787, 931
Sau3AI	GATC	5 cut(s)	49, 106, 247, 477, 523
Sau96I	GGNCC	2 cut(s)	373, 793
ScaI	AGTACT	1 cut(s)	740
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	2 cut(s)	377, 597
SexAI	ACCWGGT	1 cut(s)	595
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	2 cut(s)	373, 793
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SmlI	CTYRAG	2 cut(s)	519, 1043
SmoI	CTYRAG	2 cut(s)	519, 1043
Sse9I	AATT	8 cut(s)	35, 112, 297, 310, 391, 397, 427, 949
SsiI	CCGC	3 cut(s)	568, 692, 746
SspMI	CTAG	5 cut(s)	501, 533, 590, 680, 819
StyD4I	CCNGG	2 cut(s)	375, 595
StyI	CCWWGG	2 cut(s)	266, 472
TaaI	ACNGT	9 cut(s)	218, 262, 355, 461, 496, 706, 857, 970, 1006
TaiI	ACGT	3 cut(s)	531, 670, 990
TaqI	TCGA	2 cut(s)	780, 813
TasI	AATT	8 cut(s)	35, 112, 297, 310, 391, 397, 427, 949
TatI	WGTACW	2 cut(s)	738, 993
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	3 cut(s)	64, 676, 849
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TscAI	CASTG	6 cut(s)	358, 630, 720, 860, 973, 1011
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	4 cut(s)	488, 658, 786, 930
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	6 cut(s)	74, 87, 92, 198, 562, 686
TspRI	CASTG	6 cut(s)	358, 630, 720, 860, 973, 1011
VpaK11BI	GGWCC	2 cut(s)	373, 793
XapI	RAATTY	2 cut(s)	391, 397
XbaI	TCTAGA	1 cut(s)	679
XceI	RCATGY	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
XspI	CTAG	5 cut(s)	501, 533, 590, 680, 819
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.