Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Forward (+)

27056304 .. 27058010

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGACGTATCATCAGCCAAATGGTTTTCTGACTTGGGAATGGACTACAGTTTCATTCCTCAATGCCACTTGAACAGTATAGATGAAGGGTTTAATGCACATGATATTGGCACTGCCCTTGGGGAGAATTTCAAACAATCTTTCTCTTCTGAAAGCTATTCCTCTTACTCAACTTTGACAACCAAAAACACCACCACCACCATGACCATCGCATCAAGTGCTGGTTCATCCATTAATGAGACTTCTCATGGCACCAGCTTTGAGAGGCCAGCCAAACTGCTCAAGACTAGCAGCTGGAACTCTAGCATCACAGAAAATGTTTCACCAAAACCTTGTTCTTCCTCCTCCCAGATTCTTTCTTTTGAGAACTTGAACTCACCACTGCCTTCCAACCCTCAAAAGTTTTGTAATAAATTCGAGCCTGCGTTGAAGTCAAAGGATGAGGCACCTTCCCAAATTAACATGCAGTTTTCACATGCTCCAGACTATGAAGCAAAAGGCTGTAGCCAGGGCACCAAGAGGCCTTGCCCAACAAGTAGAACACCTTCACATGCTCAAGACCACATAATGGCCGAAAGAAAGCGGAGAGAAAAGCTCAGCCAGCAGTTCATAGCTCTTTCTGCGATCGATCTTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGATGCTATAAAGCATGCGAAGCAGCTTCAAGAAAGGGTGAAAGTGCTTGAGGAGCGATCTAAGAAAAGAACTGTGGAATCCGTGGTATTTGTGAAAAAGTCTCAACTCTCCGCTGCTGATGACACCTCTTCATGTGATGAAAACTTTGATGGTTGCGGCCCAGACGAATCTGCACTCCCAGAAATTGAAGCTAGAGTTTCAGAAAAGGATGTATTGATTCGAATCCACTGTGAGAAACAGAAAGGAGTTGTGGTGAAAATACTAAGCGAAATTGAAAAGCTTCAATTATCTGTGGTTAATAGCAGCATCTTCCCATTTGGGGCCTCCACTCTAGACATAACCATTACATCTCAGATGGATGATGGATTCAATATGACAGTGAAGGATCTAGCAAGAAAGTTGCGAGTGGCTCTGTTGACGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

366

Amino Acids

40.2

Weight (kDa)

6.72

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	251, 445, 512
AccB7I	CCANNNNNTGG	1 cut(s)	568
AciI	CCGC	3 cut(s)	583, 780, 825
AclWI	GGATC	1 cut(s)	1062
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	2 cut(s)	127, 413
AfiI	CCNNNNNNNGG	2 cut(s)	568, 988
AgsI	TTSAA	9 cut(s)	73, 133, 373, 430, 698, 857, 944, 953, 1039
AjnI	CCWGG	1 cut(s)	507
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AluBI	AGCT	9 cut(s)	156, 258, 294, 595, 614, 656, 694, 860, 949
AluI	AGCT	9 cut(s)	156, 258, 294, 595, 614, 656, 694, 860, 949
Alw26I	GTCTC	2 cut(s)	233, 774
AlwI	GGATC	1 cut(s)	1062
AoxI	GGCC	6 cut(s)	266, 521, 570, 634, 826, 990
ApeKI	GCWGC	4 cut(s)	291, 691, 782, 972
ApoI	RAATTY	2 cut(s)	127, 413
AseI	ATTAAT	1 cut(s)	234
Asp700I	GAANNNNTTC	2 cut(s)	544, 948
AspS9I	GGNCC	2 cut(s)	827, 990
AsuHPI	GGTGA	4 cut(s)	315, 369, 718, 934
AsuII	TTCGAA	1 cut(s)	889
BaeGI	GKGCMC	1 cut(s)	515
BanI	GGYRCC	3 cut(s)	251, 445, 512
BarI	GAAGNNNNNNTAC	2 cut(s)	529, 561
BbvI	GCAGC	4 cut(s)	303, 703, 769, 984
BccI	CCATC	5 cut(s)	215, 640, 812, 1018, 1025
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	233, 774
BfaI	CTAG	5 cut(s)	288, 303, 861, 1001, 1058
BfmI	CTRYAG	2 cut(s)	46, 502
BisI	GCNGC	5 cut(s)	292, 692, 783, 826, 973
BlpI	GCTNAGC	1 cut(s)	596
BlsI	GCNGC	5 cut(s)	293, 693, 784, 827, 974
Bme1390I	CCNGG	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	827, 990
BmiI	GGNNCC	4 cut(s)	253, 447, 514, 991
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	4 cut(s)	221, 315, 661, 984
BplI	GAGNNNNNCTC	2 cut(s)	579, 611
BpmI	CTGGAG	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	596
Bpu14I	TTCGAA	1 cut(s)	889
BpuEI	CTTGAG	3 cut(s)	266, 540, 737
Bsa29I	ATCGAT	1 cut(s)	627
BsaBI	GATNNNNATC	1 cut(s)	890
BsaJI	CCNNGG	3 cut(s)	118, 508, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	2 cut(s)	568, 988
Bse8I	GATNNNNATC	1 cut(s)	890
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	3 cut(s)	118, 508, 750
BseGI	GGATG	4 cut(s)	227, 445, 883, 1033
BseJI	GATNNNNATC	1 cut(s)	890
BseLI	CCNNNNNNNGG	2 cut(s)	568, 988
BseMII	CTCAG	2 cut(s)	610, 1034
BseRI	GAGGAG	2 cut(s)	334, 734
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	4 cut(s)	303, 703, 769, 984
BsgI	GTGCAG	1 cut(s)	825
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	6 cut(s)	268, 523, 572, 636, 828, 992
BshNI	GGYRCC	3 cut(s)	251, 445, 512
BshVI	ATCGAT	1 cut(s)	627
BsiEI	CGRYCG	1 cut(s)	627
BslI	CCNNNNNNNGG	2 cut(s)	568, 988
BsmAI	GTCTC	2 cut(s)	233, 774
BsnI	GGCC	6 cut(s)	268, 523, 572, 636, 828, 992
Bsp119I	TTCGAA	1 cut(s)	889
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	4 cut(s)	624, 628, 725, 1054
Bsp1720I	GCTNAGC	1 cut(s)	596
BspACI	CCGC	3 cut(s)	583, 780, 825
BspANI	GGCC	6 cut(s)	268, 523, 572, 636, 828, 992
BspCNI	CTCAG	2 cut(s)	609, 1033
BspDI	ATCGAT	1 cut(s)	627
BspLI	GGNNCC	4 cut(s)	253, 447, 514, 991
BspPI	GGATC	1 cut(s)	1062
BspT104I	TTCGAA	1 cut(s)	889
BspT107I	GGYRCC	3 cut(s)	251, 445, 512
BssECI	CCNNGG	3 cut(s)	118, 508, 750
BssMI	GATC	4 cut(s)	624, 628, 725, 1054
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	5 cut(s)	50, 77, 742, 899, 1048
Bst6I	CTCTTC	2 cut(s)	151, 802
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	889
BstC8I	GCNNGC	4 cut(s)	270, 423, 602, 684
BstDEI	CTNAG	4 cut(s)	596, 729, 932, 1020
BstDSI	CCRYGG	1 cut(s)	750
BstF5I	GGATG	4 cut(s)	227, 445, 883, 1033
BstKTI	GATC	4 cut(s)	627, 631, 728, 1057
BstMAI	GTCTC	2 cut(s)	233, 774
BstMBI	GATC	4 cut(s)	624, 628, 725, 1054
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 601, 620, 688, 721
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	4 cut(s)	466, 479, 554, 686
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	2 cut(s)	46, 502
BstSLI	GKGCMC	1 cut(s)	515
BstV1I	GCAGC	4 cut(s)	303, 703, 769, 984
BstX2I	RGATCY	1 cut(s)	1054
BstYI	RGATCY	1 cut(s)	1054
Bsu15I	ATCGAT	1 cut(s)	627
BsuRI	GGCC	6 cut(s)	268, 523, 572, 636, 828, 992
BsuTUI	ATCGAT	1 cut(s)	627
BtgI	CCRYGG	1 cut(s)	750
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	227, 445, 883, 1033
BtsI	GCAGTG	2 cut(s)	111, 380
BtsIMutI	CAGTG	4 cut(s)	111, 380, 895, 1053
Cac8I	GCNNGC	4 cut(s)	270, 423, 602, 684
Cfr13I	GGNCC	2 cut(s)	827, 990
ClaI	ATCGAT	1 cut(s)	627
CviAII	CATG	9 cut(s)	101, 202, 248, 463, 476, 551, 683, 801, 1093
DdeI	CTNAG	4 cut(s)	596, 729, 932, 1020
DpnI	GATC	4 cut(s)	626, 630, 727, 1056
DpnII	GATC	4 cut(s)	624, 628, 725, 1054
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	151, 802
EarI	CTCTTC	2 cut(s)	151, 802
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	990
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	9 cut(s)	104, 205, 251, 466, 479, 554, 686, 804, 1096
FatI	CATG	9 cut(s)	100, 201, 247, 462, 475, 550, 682, 800, 1092
Fnu4HI	GCNGC	5 cut(s)	292, 692, 783, 826, 973
FokI	GGATG	4 cut(s)	214, 452, 890, 1040
Fsp4HI	GCNGC	5 cut(s)	292, 692, 783, 826, 973
FspBI	CTAG	5 cut(s)	288, 303, 861, 1001, 1058
GluI	GCNGC	5 cut(s)	292, 692, 783, 826, 973
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	6 cut(s)	268, 523, 572, 636, 828, 992
Hin1II	CATG	9 cut(s)	104, 205, 251, 466, 479, 554, 686, 804, 1096
HincII	GTYRAC	1 cut(s)	1086
HindII	GTYRAC	1 cut(s)	1086
HindIII	AAGCTT	2 cut(s)	654, 947
HinfI	GANTC	6 cut(s)	352, 746, 836, 886, 891, 1035
HphI	GGTGA	4 cut(s)	315, 369, 718, 934
Hpy166II	GTNNAC	1 cut(s)	1086
Hpy188I	TCNGA	4 cut(s)	31, 151, 871, 1023
Hpy188III	TCNNGA	5 cut(s)	283, 482, 557, 698, 1001
Hpy8I	GTNNAC	1 cut(s)	1086
HpyAV	CCTTC	5 cut(s)	80, 396, 459, 555, 1045
HpyCH4III	ACNGT	5 cut(s)	50, 77, 742, 899, 1048
HpyCH4IV	ACGT	2 cut(s)	6, 1088
HpyCH4V	TGCA	3 cut(s)	98, 466, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 601, 620, 688, 721
HpyF3I	CTNAG	4 cut(s)	596, 729, 932, 1020
HpySE526I	ACGT	2 cut(s)	6, 1088
Hsp92II	CATG	9 cut(s)	104, 205, 251, 466, 479, 554, 686, 804, 1096
Kzo9I	GATC	4 cut(s)	624, 628, 725, 1054
LmnI	GCTCC	2 cut(s)	484, 721
Lsp1109I	GCAGC	4 cut(s)	303, 703, 769, 984
LweI	GCATC	4 cut(s)	221, 315, 661, 984
MaeI	CTAG	5 cut(s)	288, 303, 861, 1001, 1058
MaeII	ACGT	2 cut(s)	6, 1088
MalI	GATC	4 cut(s)	626, 630, 727, 1056
MboI	GATC	4 cut(s)	624, 628, 725, 1054
MboII	GAAGA	5 cut(s)	138, 330, 655, 789, 970
MflI	RGATCY	1 cut(s)	1054
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	6 cut(s)	127, 413, 456, 852, 939, 953
MmeI	TCCRAC	1 cut(s)	414
MroXI	GAANNNNTTC	2 cut(s)	544, 948
MseI	TTAA	4 cut(s)	93, 234, 459, 966
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	294, 782
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	5 cut(s)	218, 601, 620, 688, 721
NdeII	GATC	4 cut(s)	624, 628, 725, 1054
NlaIII	CATG	9 cut(s)	104, 205, 251, 466, 479, 554, 686, 804, 1096
NlaIV	GGNNCC	4 cut(s)	253, 447, 514, 991
NspI	RCATGY	4 cut(s)	466, 479, 554, 686
NspV	TTCGAA	1 cut(s)	889
PaeI	GCATGC	1 cut(s)	686
PceI	AGGCCT	1 cut(s)	523
PdmI	GAANNNNTTC	2 cut(s)	544, 948
PfeI	GAWTC	6 cut(s)	352, 746, 836, 886, 891, 1035
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	5 cut(s)	293, 693, 784, 827, 974
Ple19I	CGATCG	1 cut(s)	627
PshBI	ATTAAT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	4 cut(s)	253, 447, 514, 991
PspPI	GGNCC	2 cut(s)	827, 990
PsuI	RGATCY	1 cut(s)	1054
PvuI	CGATCG	1 cut(s)	627
PvuII	CAGCTG	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	4 cut(s)	93, 234, 459, 966
SatI	GCNGC	5 cut(s)	292, 692, 783, 826, 973
Sau3AI	GATC	4 cut(s)	624, 628, 725, 1054
Sau96I	GGNCC	2 cut(s)	827, 990
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	4 cut(s)	221, 315, 661, 984
SfcI	CTRYAG	2 cut(s)	46, 502
SfuI	TTCGAA	1 cut(s)	889
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	3 cut(s)	281, 555, 716
SmoI	CTYRAG	3 cut(s)	281, 555, 716
SphI	GCATGC	1 cut(s)	686
Sse9I	AATT	6 cut(s)	127, 413, 456, 852, 939, 953
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	3 cut(s)	583, 780, 825
SspMI	CTAG	5 cut(s)	288, 303, 861, 1001, 1058
StuI	AGGCCT	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	5 cut(s)	50, 77, 742, 899, 1048
TaiI	ACGT	2 cut(s)	9, 1091
TaqI	TCGA	3 cut(s)	417, 627, 889
TasI	AATT	6 cut(s)	127, 413, 456, 852, 939, 953
TauI	GCSGC	1 cut(s)	828
TfiI	GAWTC	6 cut(s)	352, 746, 836, 886, 891, 1035
Tru1I	TTAA	4 cut(s)	93, 234, 459, 966
Tru9I	TTAA	4 cut(s)	93, 234, 459, 966
TscAI	CASTG	4 cut(s)	118, 387, 902, 1053
TseI	GCWGC	4 cut(s)	291, 691, 782, 972
TspDTI	ATGAA	8 cut(s)	43, 99, 216, 504, 598, 789, 822, 1081
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	4 cut(s)	118, 387, 902, 1053
Van91I	CCANNNNNTGG	1 cut(s)	568
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	2 cut(s)	127, 413
XbaI	TCTAGA	1 cut(s)	1000
XceI	RCATGY	4 cut(s)	466, 479, 554, 686
XmnI	GAANNNNTTC	2 cut(s)	544, 948
XspI	CTAG	5 cut(s)	288, 303, 861, 1001, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.