Rorug06G0411300

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000792
Physical Location & Seq
Reverse (-)
55342678 .. 55343965
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0411300.1

Sequence Viewer

Length: 1158 bp
ATGATATATATTCATACAGGTCTCTGTTTATGGCCGGCCTCAGTCGTAATAAATATCGAACCCCAAATCATCCTTCGAGCATCCCCAACTCTGCAAGCTACCTTCAACCTCAAAACCCTCCGAGGCTTAGACTTGGCCATCTCAATTCCACTTAAGATGGATAAACGATTCAAGCTCAAGCTCAAATTCCCTCGAGTTATTCCTATGATCCACTTTTGCCGTCCTAAACACAACCCCAATAATCCGGCGGTAGTTCCAGCAATTTACCGTCTGTCCCCGATGAACCCGAAAGTCGAGGACATCGGCTACCCCAGCATCATCCTGCCGGGACCACCACCATCAACACCGGAGAACACTTCCGTCAAGCGCCACGTGTCTTCCGGCACCACGGCGGTCGGCTGCGGATGCAGCGGGTCTAGGTCATGGACACGAGACCTCTTGTACTCCAGCATCGAATCACCAGAGTATGAAGTTAATGCAACGCCGCATTTGATGACTGAAAAGTACTACAACGATAAGAAGAACAAGAGCAGCAATGAGAAGAGGAGGAAGAAACCGAAAGCGAAAGCCAGTCTTCCTTCATCGGAAAGCAGTAACCGCTGGTTTAGCAGCGAAGAGGAGAATGAAGAGAGCGAAACCCCAATCTATTCTTCGAGAAGCTTCTCGACAGACTTTTCAGCTGTGCTCGAGACTATAAGCGAGGTATCAGACAAACAAAGTAGCAAAACGAAGAAGAGCAATTATAAGGTTAGGAGACTGAACCGATGCGTGTCAAAGAACTGGAAAGAAGCAGAGAAATCATCAACTGGTGAGATAGGGAAGATCAAGTCGGTGTTCCAGCCGATGAGAGTGTGCAGGAGAAAAGGGATGGTAAAGGACAGCATGGCAGTGGTGAAGAAGTCGGAGGATCCGTTCGAGGACTTCAAGAGGTCGATGATGGAGATGATAATGGAGAAGCAGATTTTCGAGGCAAGAGAATTAGAGGAGCTGCTACACTGCTTCCTGACCTTGAACTCGCGCCATTATCAAGGAGTCATAGTTGAGGCCTTCTCGGAGATATGGAAGCTCGTGTTTTCAGACACACCCTCAACGTCAAGTGAGTTCTACTGTTTTGCGGATAAGTCCCAAACAGACCAACTGTCCAAGTTGAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

385

Amino Acids

43.9

Weight (kDa)

9.37

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 301 - 355 6.7e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
AccB1I GGYRCC 1 cut(s) 383
AccII CGCG 1 cut(s) 1018
AciI CCGC 7 cut(s) 248, 392, 402, 411, 485, 598, 1115
AclWI GGATC 3 cut(s) 202, 902, 915
AcoI YGGCCR 2 cut(s) 32, 135
AcsI RAATTY 1 cut(s) 185
AcvI CACGTG 1 cut(s) 373
AfaI GTAC 2 cut(s) 443, 506
AflII CTTAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 5 cut(s) 106, 172, 925, 1012, 1150
AhdI GACNNNNNGTC 1 cut(s) 1138
AjuI GAANNNNNNNTTGG 4 cut(s) 57, 89, 634, 666
AloI GAACNNNNNNTCC 2 cut(s) 896, 928
AluBI AGCT 7 cut(s) 98, 175, 181, 660, 680, 988, 1066
AluI AGCT 7 cut(s) 98, 175, 181, 660, 680, 988, 1066
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 4 cut(s) 26, 426, 683, 748
AlwI GGATC 3 cut(s) 202, 902, 915
Ama87I CYCGRG 2 cut(s) 192, 686
AoxI GGCC 4 cut(s) 32, 36, 135, 1044
ApeKI GCWGC 5 cut(s) 399, 408, 531, 609, 988
ApoI RAATTY 1 cut(s) 185
AspLEI GCGC 2 cut(s) 369, 1020
AspS9I GGNCC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 3 cut(s) 450, 821, 904
AvaI CYCGRG 2 cut(s) 192, 686
AvaII GGWCC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 137
BamHI GGATCC 1 cut(s) 907
BanI GGYRCC 1 cut(s) 383
BauI CACGAG 2 cut(s) 429, 1067
BbrPI CACGTG 1 cut(s) 373
BbsI GAAGAC 2 cut(s) 369, 566
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 5 cut(s) 386, 420, 543, 621, 975
BccI CCATC 5 cut(s) 146, 151, 346, 862, 931
BceAI ACGGC 2 cut(s) 204, 405
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 4 cut(s) 26, 426, 683, 748
BfaI CTAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 370
BfrI CTTAAG 1 cut(s) 152
BglII AGATCT 1 cut(s) 1152
BisI GCNGC 6 cut(s) 400, 409, 485, 532, 610, 989
BlsI GCNGC 6 cut(s) 401, 410, 486, 533, 611, 990
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 329
BmeRI GACNNNNNGTC 1 cut(s) 1138
BmeT110I CYCGRG 2 cut(s) 192, 686
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 3 cut(s) 330, 385, 909
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 5 cut(s) 89, 324, 395, 459, 755
BpiI GAAGAC 2 cut(s) 369, 566
BplI GAGNNNNNCTC 2 cut(s) 1034, 1066
BpmI CTGGAG 1 cut(s) 430
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 373
BsaI GGTCTC 2 cut(s) 26, 426
BsaJI CCNNGG 2 cut(s) 121, 387
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 4 cut(s) 896, 926, 1023, 1053
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 570, 785, 811
Bse3DI GCAATG 1 cut(s) 541
BseDI CCNNGG 2 cut(s) 121, 387
BseGI GGATG 5 cut(s) 69, 80, 318, 410, 873
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 3 cut(s) 570, 785, 811
BseRI GAGGAG 3 cut(s) 559, 632, 998
BseXI GCAGC 5 cut(s) 386, 420, 543, 621, 975
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 874
Bsh1236I CGCG 1 cut(s) 1018
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 4 cut(s) 34, 38, 137, 1046
BshNI GGYRCC 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 687
BsiHKCI CYCGRG 2 cut(s) 192, 686
BsiSI CCGG 5 cut(s) 35, 245, 326, 347, 381
BslFI GGGAC 3 cut(s) 259, 342, 1108
BsmAI GTCTC 4 cut(s) 26, 426, 683, 748
BsmFI GGGAC 3 cut(s) 259, 342, 1108
BsnI GGCC 4 cut(s) 34, 38, 137, 1046
Bso31I GGTCTC 2 cut(s) 26, 426
BsoBI CYCGRG 2 cut(s) 192, 686
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 4 cut(s) 207, 822, 907, 1152
BspACI CCGC 7 cut(s) 248, 392, 402, 411, 485, 598, 1115
BspANI GGCC 4 cut(s) 34, 38, 137, 1046
BspCNI CTCAG 1 cut(s) 53
BspFNI CGCG 1 cut(s) 1018
BspLI GGNNCC 3 cut(s) 330, 385, 909
BspPI GGATC 3 cut(s) 202, 902, 915
BspQI GCTCTTC 1 cut(s) 728
BspT107I GGYRCC 1 cut(s) 383
BspTI CTTAAG 1 cut(s) 152
BspTNI GGTCTC 2 cut(s) 26, 426
BsrDI GCAATG 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 3 cut(s) 570, 785, 811
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 121, 387
BssMI GATC 4 cut(s) 207, 822, 907, 1152
BssSI CACGAG 2 cut(s) 429, 1067
Bst2BI CACGAG 2 cut(s) 429, 1067
Bst4CI ACNGT 3 cut(s) 269, 1109, 1140
Bst6I CTCTTC 4 cut(s) 536, 609, 621, 728
BstAFI CTTAAG 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 373
BstC8I GCNNGC 2 cut(s) 36, 96
BstDEI CTNAG 2 cut(s) 40, 127
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 5 cut(s) 69, 80, 318, 410, 873
BstFNI CGCG 1 cut(s) 1018
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 2 cut(s) 369, 1020
BstKTI GATC 4 cut(s) 210, 825, 910, 1155
BstMAI GTCTC 4 cut(s) 26, 426, 683, 748
BstMBI GATC 4 cut(s) 207, 822, 907, 1152
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 5 cut(s) 312, 405, 408, 597, 606
BstSCI CCNGG 1 cut(s) 325
BstUI CGCG 1 cut(s) 1018
BstV1I GCAGC 5 cut(s) 386, 420, 543, 621, 975
BstV2I GAAGAC 2 cut(s) 369, 566
BstX2I RGATCY 2 cut(s) 907, 1152
BstYI RGATCY 2 cut(s) 907, 1152
BsuRI GGCC 4 cut(s) 34, 38, 137, 1046
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 5 cut(s) 69, 80, 318, 410, 873
BtsI GCAGTG 2 cut(s) 894, 994
BtsIMutI CAGTG 2 cut(s) 894, 994
Cac8I GCNNGC 2 cut(s) 36, 96
CfoI GCGC 2 cut(s) 369, 1020
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 442, 505
CviAII CATG 2 cut(s) 423, 883
CviQI GTAC 2 cut(s) 442, 505
DdeI CTNAG 2 cut(s) 40, 127
DpnI GATC 4 cut(s) 209, 824, 909, 1154
DpnII GATC 4 cut(s) 207, 822, 907, 1152
DriI GACNNNNNGTC 1 cut(s) 1138
EaeI YGGCCR 2 cut(s) 32, 135
Eam1104I CTCTTC 4 cut(s) 536, 609, 621, 728
Eam1105I GACNNNNNGTC 1 cut(s) 1138
EarI CTCTTC 4 cut(s) 536, 609, 621, 728
Eco147I AGGCCT 1 cut(s) 1046
Eco31I GGTCTC 2 cut(s) 26, 426
Eco47I GGWCC 1 cut(s) 329
Eco72I CACGTG 1 cut(s) 373
Eco88I CYCGRG 2 cut(s) 192, 686
FaeI CATG 2 cut(s) 426, 886
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 3 cut(s) 259, 342, 1108
FatI CATG 2 cut(s) 422, 882
FauI CCCGC 1 cut(s) 404
Fnu4HI GCNGC 6 cut(s) 400, 409, 485, 532, 610, 989
FokI GGATG 5 cut(s) 56, 67, 305, 417, 880
FseI GGCCGGCC 1 cut(s) 38
Fsp4HI GCNGC 6 cut(s) 400, 409, 485, 532, 610, 989
FspBI CTAG 1 cut(s) 417
GlaI GCGC 2 cut(s) 368, 1019
GluI GCNGC 6 cut(s) 400, 409, 485, 532, 610, 989
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 430
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 4 cut(s) 34, 38, 137, 1046
HapII CCGG 5 cut(s) 35, 245, 326, 347, 381
HhaI GCGC 2 cut(s) 369, 1020
Hin1II CATG 2 cut(s) 426, 886
Hin6I GCGC 2 cut(s) 367, 1018
HinP1I GCGC 2 cut(s) 367, 1018
HindIII AAGCTT 1 cut(s) 658
HinfI GANTC 3 cut(s) 168, 455, 1032
HpaII CCGG 5 cut(s) 35, 245, 326, 347, 381
HphI GGTGA 3 cut(s) 450, 821, 904
Hpy188I TCNGA 7 cut(s) 122, 586, 709, 904, 1054, 1078, 1157
Hpy188III TCNNGA 5 cut(s) 654, 664, 688, 925, 1003
HpyAV CCTTC 4 cut(s) 83, 112, 588, 1057
HpyCH4III ACNGT 3 cut(s) 269, 1109, 1140
HpyCH4IV ACGT 2 cut(s) 372, 1091
HpyCH4V TGCA 4 cut(s) 94, 408, 479, 855
HpyF10VI GCNNNNNNNGC 5 cut(s) 312, 405, 408, 597, 606
HpyF3I CTNAG 2 cut(s) 40, 127
HpySE526I ACGT 2 cut(s) 372, 1091
Hsp92II CATG 2 cut(s) 426, 886
HspAI GCGC 2 cut(s) 367, 1018
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Kzo9I GATC 4 cut(s) 207, 822, 907, 1152
LguI GCTCTTC 1 cut(s) 728
LmnI GCTCC 1 cut(s) 985
Lsp1109I GCAGC 5 cut(s) 386, 420, 543, 621, 975
LweI GCATC 5 cut(s) 89, 324, 395, 459, 755
MaeI CTAG 1 cut(s) 417
MaeII ACGT 2 cut(s) 372, 1091
MaeIII GTNAC 1 cut(s) 593
MalI GATC 4 cut(s) 209, 824, 909, 1154
MboI GATC 4 cut(s) 207, 822, 907, 1152
MflI RGATCY 2 cut(s) 907, 1152
MhlI GDGCHC 1 cut(s) 687
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 5 cut(s) 144, 185, 261, 739, 977
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 1 cut(s) 1041
MmeI TCCRAC 1 cut(s) 882
Mox20I TGGCCA 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 34
MscI TGGCCA 1 cut(s) 137
MseI TTAA 2 cut(s) 153, 474
MslI CAYNNNNRTG 1 cut(s) 887
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 3 cut(s) 411, 600, 680
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 5 cut(s) 35, 245, 326, 347, 381
MspR9I CCNGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 1018
MwoI GCNNNNNNNGC 5 cut(s) 312, 405, 408, 597, 606
NaeI GCCGGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 327
NdeII GATC 4 cut(s) 207, 822, 907, 1152
NgoMIV GCCGGC 1 cut(s) 34
NlaIII CATG 2 cut(s) 426, 886
NlaIV GGNNCC 3 cut(s) 330, 385, 909
PaeR7I CTCGAG 2 cut(s) 192, 686
PceI AGGCCT 1 cut(s) 1046
PciSI GCTCTTC 1 cut(s) 728
PcsI WCGNNNNNNNCGW 1 cut(s) 908
PdiI GCCGGC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 168, 455
PkrI GCNGC 6 cut(s) 401, 410, 486, 533, 611, 990
PleI GAGTC 1 cut(s) 1040
PmaCI CACGTG 1 cut(s) 373
PmlI CACGTG 1 cut(s) 373
PpsI GAGTC 1 cut(s) 1040
Ppu21I YACGTR 1 cut(s) 373
PsiI TTATAA 1 cut(s) 744
PspCI CACGTG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 311
PspN4I GGNNCC 3 cut(s) 330, 385, 909
PspPI GGNCC 1 cut(s) 329
PspXI VCTCGAGB 1 cut(s) 192
PsuI RGATCY 2 cut(s) 907, 1152
PvuII CAGCTG 1 cut(s) 680
RigI GGCCGGCC 1 cut(s) 38
RsaI GTAC 2 cut(s) 443, 506
RsaNI GTAC 2 cut(s) 442, 505
RseI CAYNNNNRTG 1 cut(s) 887
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 2 cut(s) 153, 474
SatI GCNGC 6 cut(s) 400, 409, 485, 532, 610, 989
Sau3AI GATC 4 cut(s) 207, 822, 907, 1152
Sau96I GGNCC 1 cut(s) 329
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 1 cut(s) 1041
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 687
SfaNI GCATC 5 cut(s) 89, 324, 395, 459, 755
Sfr274I CTCGAG 2 cut(s) 192, 686
SinI GGWCC 1 cut(s) 329
SlaI CTCGAG 2 cut(s) 192, 686
SmiMI CAYNNNNRTG 1 cut(s) 887
SmlI CTYRAG 4 cut(s) 152, 176, 192, 686
SmoI CTYRAG 4 cut(s) 152, 176, 192, 686
Sse9I AATT 5 cut(s) 144, 185, 261, 739, 977
SseBI AGGCCT 1 cut(s) 1046
SsiI CCGC 7 cut(s) 248, 392, 402, 411, 485, 598, 1115
SspMI CTAG 1 cut(s) 417
StuI AGGCCT 1 cut(s) 1046
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 3 cut(s) 269, 1109, 1140
TaiI ACGT 2 cut(s) 375, 1094
TasI AATT 5 cut(s) 144, 185, 261, 739, 977
TatI WGTACW 2 cut(s) 441, 504
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 2 cut(s) 168, 455
Tru1I TTAA 2 cut(s) 153, 474
Tru9I TTAA 2 cut(s) 153, 474
TscAI CASTG 2 cut(s) 894, 1001
TseI GCWGC 5 cut(s) 399, 408, 531, 609, 988
TspDTI ATGAA 4 cut(s) 296, 483, 570, 639
TspGWI ACGGA 2 cut(s) 349, 900
TspRI CASTG 2 cut(s) 894, 1001
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 185
XhoI CTCGAG 2 cut(s) 192, 686
XspI CTAG 1 cut(s) 417
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.