Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Forward (+)

38574426 .. 38576138

Gene Structure 1713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1282500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGACTACAGTTTCATTCCTCAATGCCACTTGAACGGTCTAGATGAAGGGTTTAATGCACATGATATTGGCACTGCCCTTGGGGAGAATTTCAAACATTCTTTTTCTGAGAGCTATTCCTCTTACTCAACTTTGACAACCAAAAACACCACCACCACCACGACCATCGCATCAAGTGGTTCATCCATTAATGAGACTTCTCATGGTACCAGCTTTGAGAGCCCAGCCAAACTGCTCAAGACTAGCAGCTGGAACTCTAGCATCACAGAAAATGTTTCACCAAAACCTTGTTCTTCCTCCTCCCAGATTCTTTCTTTTGAGAACTTGAACTCACCACTGCCTTCCAACCCTCAAAAGTTTTGTAATAAATTCGAGCCTGCGTTGAAGTCAAAGGATGAGGCACCATCCCAAATTAACATGCAGTTTTCACATGCTCAAGACTATGAAGCAAAAGGCTGTAGCCAGGGCACTAAGAGGCCTTGCCCAACAAGTAGAACACCTTCACATGCTCAAGACCACATAATGGCTGAAAGAAAGCGGAGAGAAAAGCTCAGCCAGCGCTTCATGGCTCTTTCTGCGATCGTTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGATGCTATAAAGCATGTGAAGCAGCTTCAAGAAAGGGTCAAAGTGCTTGAGGAAAGATCTAAGAAAAGAACTGTGGAATCCGTGGTATTTGTGAAAAAGTCTCAACTCTCCGCTGATGATGACACCTCTTCTTGTGATGAAAACTTTGATGGTTGCAGCCCAGACGAAGCTGCACTCCCAGAAATTGAAGCAAGAGTTTCAGAAAAGGATGTATTGATTCGAATCCACTGCGAGAAACAGAAAGGAGTTGTGGTGAAAATACTAAGCGAAATTGAAAAGCTTCAATTATCTGTGGTTAATAGCAGCATCTTCCCATTTGGGGCCTCCACTCTAGACATAACCATTATGTCTCAGATGGATGATGGATTCAATATGACAGTGAAGGATCTAGCAAGAAAGTTGCGAGTGGCTCTGTTGACGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

351

Amino Acids

38.66

Weight (kDa)

7.1

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	173 - 218	8.9e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	273 - 342	1.8e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	2 cut(s)	206, 400
AccB7I	CCANNNNNTGG	1 cut(s)	523
AciI	CCGC	2 cut(s)	538, 735
AclWI	GGATC	1 cut(s)	1017
AcsI	RAATTY	2 cut(s)	88, 368
AfaI	GTAC	1 cut(s)	208
AfeI	AGCGCT	1 cut(s)	560
AfiI	CCNNNNNNNGG	2 cut(s)	523, 943
AgsI	TTSAA	9 cut(s)	34, 94, 328, 385, 653, 812, 899, 908, 994
AjnI	CCWGG	2 cut(s)	462, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AluBI	AGCT	8 cut(s)	114, 213, 249, 550, 611, 649, 794, 904
AluI	AGCT	8 cut(s)	114, 213, 249, 550, 611, 649, 794, 904
Alw26I	GTCTC	3 cut(s)	188, 729, 978
AlwI	GGATC	1 cut(s)	1017
Aor51HI	AGCGCT	1 cut(s)	560
AoxI	GGCC	3 cut(s)	476, 589, 945
ApeKI	GCWGC	5 cut(s)	246, 646, 780, 794, 927
ApoI	RAATTY	2 cut(s)	88, 368
AseI	ATTAAT	1 cut(s)	189
Asp700I	GAANNNNTTC	2 cut(s)	499, 903
Asp718I	GGTACC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	945
AsuHPI	GGTGA	3 cut(s)	270, 324, 889
AsuII	TTCGAA	1 cut(s)	844
BaeGI	GKGCMC	1 cut(s)	470
BanI	GGYRCC	2 cut(s)	206, 400
BanII	GRGCYC	1 cut(s)	224
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
BbvI	GCAGC	5 cut(s)	258, 658, 781, 792, 939
BccI	CCATC	6 cut(s)	173, 412, 595, 767, 973, 980
BcgI	CGANNNNNNTGC	2 cut(s)	834, 868
BciT130I	CCWGG	2 cut(s)	464, 588
BcoDI	GTCTC	3 cut(s)	188, 729, 978
BfaI	CTAG	5 cut(s)	41, 243, 258, 956, 1013
BfmI	CTRYAG	2 cut(s)	7, 457
BfoI	RGCGCY	1 cut(s)	562
BglII	AGATCT	1 cut(s)	680
BisI	GCNGC	5 cut(s)	247, 647, 781, 795, 928
BlpI	GCTNAGC	1 cut(s)	551
BlsI	GCNGC	5 cut(s)	248, 648, 782, 796, 929
Bme1390I	CCNGG	2 cut(s)	464, 588
BmgT120I	GGNCC	1 cut(s)	945
BmiI	GGNNCC	3 cut(s)	208, 402, 946
BmrFI	CCNGG	2 cut(s)	464, 588
BmsI	GCATC	4 cut(s)	179, 270, 616, 939
BplI	GAGNNNNNCTC	2 cut(s)	534, 566
Bpu1102I	GCTNAGC	1 cut(s)	551
Bpu14I	TTCGAA	1 cut(s)	844
BpuEI	CTTGAG	4 cut(s)	221, 420, 495, 692
BsaBI	GATNNNNATC	1 cut(s)	845
BsaJI	CCNNGG	3 cut(s)	79, 463, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	861, 891
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 943
Bse8I	GATNNNNATC	1 cut(s)	845
BseBI	CCWGG	2 cut(s)	464, 588
BseDI	CCNNGG	3 cut(s)	79, 463, 705
BseGI	GGATG	5 cut(s)	182, 400, 404, 838, 988
BseJI	GATNNNNATC	1 cut(s)	845
BseLI	CCNNNNNNNGG	2 cut(s)	523, 943
BseMII	CTCAG	3 cut(s)	99, 565, 989
BseRI	GAGGAG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	5 cut(s)	258, 658, 781, 792, 939
BseYI	CCCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	780
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	3 cut(s)	478, 591, 947
BshNI	GGYRCC	2 cut(s)	206, 400
BsiEI	CGRYCG	1 cut(s)	582
BslI	CCNNNNNNNGG	2 cut(s)	523, 943
BsmAI	GTCTC	3 cut(s)	188, 729, 978
BsnI	GGCC	3 cut(s)	478, 591, 947
Bsp119I	TTCGAA	1 cut(s)	844
Bsp1286I	GDGCHC	2 cut(s)	224, 470
Bsp143I	GATC	3 cut(s)	579, 680, 1009
Bsp1720I	GCTNAGC	1 cut(s)	551
BspACI	CCGC	2 cut(s)	538, 735
BspANI	GGCC	3 cut(s)	478, 591, 947
BspCNI	CTCAG	3 cut(s)	100, 564, 988
BspLI	GGNNCC	3 cut(s)	208, 402, 946
BspPI	GGATC	1 cut(s)	1017
BspT104I	TTCGAA	1 cut(s)	844
BspT107I	GGYRCC	2 cut(s)	206, 400
BssECI	CCNNGG	3 cut(s)	79, 463, 705
BssMI	GATC	3 cut(s)	579, 680, 1009
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	464, 588
Bst4CI	ACNGT	4 cut(s)	11, 38, 697, 1003
Bst6I	CTCTTC	1 cut(s)	757
BstBI	TTCGAA	1 cut(s)	844
BstC8I	GCNNGC	2 cut(s)	378, 557
BstDEI	CTNAG	6 cut(s)	108, 471, 551, 684, 887, 975
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	5 cut(s)	182, 400, 404, 838, 988
BstH2I	RGCGCY	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	3 cut(s)	582, 683, 1012
BstMAI	GTCTC	3 cut(s)	188, 729, 978
BstMBI	GATC	3 cut(s)	579, 680, 1009
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 556, 575, 643
BstNI	CCWGG	2 cut(s)	464, 588
BstNSI	RCATGY	4 cut(s)	421, 434, 509, 641
BstSCI	CCNGG	2 cut(s)	462, 586
BstSFI	CTRYAG	2 cut(s)	7, 457
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	5 cut(s)	258, 658, 781, 792, 939
BstX2I	RGATCY	2 cut(s)	680, 1009
BstYI	RGATCY	2 cut(s)	680, 1009
BsuRI	GGCC	3 cut(s)	478, 591, 947
BtgI	CCRYGG	1 cut(s)	705
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	5 cut(s)	182, 400, 404, 838, 988
BtsI	GCAGTG	3 cut(s)	72, 335, 850
BtsIMutI	CAGTG	4 cut(s)	72, 335, 850, 1008
Cac8I	GCNNGC	2 cut(s)	378, 557
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	1 cut(s)	945
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	8 cut(s)	62, 203, 418, 431, 506, 565, 638, 1048
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	6 cut(s)	108, 471, 551, 684, 887, 975
DpnI	GATC	3 cut(s)	581, 682, 1011
DpnII	GATC	3 cut(s)	579, 680, 1009
Eam1104I	CTCTTC	1 cut(s)	757
EarI	CTCTTC	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	224
Eco47III	AGCGCT	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	945
EcoRII	CCWGG	2 cut(s)	462, 586
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	8 cut(s)	65, 206, 421, 434, 509, 568, 641, 1051
FatI	CATG	8 cut(s)	61, 202, 417, 430, 505, 564, 637, 1047
Fnu4HI	GCNGC	5 cut(s)	247, 647, 781, 795, 928
FokI	GGATG	5 cut(s)	169, 391, 407, 845, 995
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	5 cut(s)	247, 647, 781, 795, 928
FspBI	CTAG	5 cut(s)	41, 243, 258, 956, 1013
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	5 cut(s)	247, 647, 781, 795, 928
GsaI	CCCAGC	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	562
HaeIII	GGCC	3 cut(s)	478, 591, 947
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	8 cut(s)	65, 206, 421, 434, 509, 568, 641, 1051
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HincII	GTYRAC	1 cut(s)	1041
HindII	GTYRAC	1 cut(s)	1041
HindIII	AAGCTT	2 cut(s)	609, 902
HinfI	GANTC	5 cut(s)	307, 701, 841, 846, 990
HphI	GGTGA	3 cut(s)	270, 324, 889
Hpy166II	GTNNAC	1 cut(s)	1041
Hpy188I	TCNGA	3 cut(s)	109, 826, 978
Hpy188III	TCNNGA	6 cut(s)	41, 238, 437, 512, 653, 956
Hpy8I	GTNNAC	1 cut(s)	1041
HpyAV	CCTTC	4 cut(s)	41, 351, 510, 1000
HpyCH4III	ACNGT	4 cut(s)	11, 38, 697, 1003
HpyCH4IV	ACGT	1 cut(s)	1043
HpyCH4V	TGCA	4 cut(s)	59, 421, 780, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 556, 575, 643
HpyF3I	CTNAG	6 cut(s)	108, 471, 551, 684, 887, 975
HpySE526I	ACGT	1 cut(s)	1043
Hsp92II	CATG	8 cut(s)	65, 206, 421, 434, 509, 568, 641, 1051
HspAI	GCGC	1 cut(s)	559
KpnI	GGTACC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	579, 680, 1009
Lsp1109I	GCAGC	5 cut(s)	258, 658, 781, 792, 939
LweI	GCATC	4 cut(s)	179, 270, 616, 939
MaeI	CTAG	5 cut(s)	41, 243, 258, 956, 1013
MaeII	ACGT	1 cut(s)	1043
MalI	GATC	3 cut(s)	581, 682, 1011
MboI	GATC	3 cut(s)	579, 680, 1009
MboII	GAAGA	4 cut(s)	285, 610, 744, 925
MflI	RGATCY	2 cut(s)	680, 1009
MhlI	GDGCHC	2 cut(s)	224, 470
MluCI	AATT	6 cut(s)	88, 368, 411, 807, 894, 908
MmeI	TCCRAC	1 cut(s)	369
MroXI	GAANNNNTTC	2 cut(s)	499, 903
MseI	TTAA	4 cut(s)	54, 189, 414, 921
MspA1I	CMGCKG	2 cut(s)	249, 737
MspR9I	CCNGG	2 cut(s)	464, 588
MvaI	CCWGG	2 cut(s)	464, 588
MwoI	GCNNNNNNNGC	4 cut(s)	219, 556, 575, 643
NdeII	GATC	3 cut(s)	579, 680, 1009
NlaIII	CATG	8 cut(s)	65, 206, 421, 434, 509, 568, 641, 1051
NlaIV	GGNNCC	3 cut(s)	208, 402, 946
NspI	RCATGY	4 cut(s)	421, 434, 509, 641
NspV	TTCGAA	1 cut(s)	844
PceI	AGGCCT	1 cut(s)	478
PdmI	GAANNNNTTC	2 cut(s)	499, 903
PfeI	GAWTC	5 cut(s)	307, 701, 841, 846, 990
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	5 cut(s)	248, 648, 782, 796, 929
Ple19I	CGATCG	1 cut(s)	582
PshBI	ATTAAT	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	462, 586
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	2 cut(s)	462, 586
PspN4I	GGNNCC	3 cut(s)	208, 402, 946
PspPI	GGNCC	1 cut(s)	945
PsuI	RGATCY	2 cut(s)	680, 1009
PvuI	CGATCG	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	249
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	54, 189, 414, 921
SatI	GCNGC	5 cut(s)	247, 647, 781, 795, 928
Sau3AI	GATC	3 cut(s)	579, 680, 1009
Sau96I	GGNCC	1 cut(s)	945
ScrFI	CCNGG	2 cut(s)	464, 588
SduI	GDGCHC	2 cut(s)	224, 470
SfaNI	GCATC	4 cut(s)	179, 270, 616, 939
SfcI	CTRYAG	2 cut(s)	7, 457
SfuI	TTCGAA	1 cut(s)	844
SmlI	CTYRAG	4 cut(s)	236, 435, 510, 671
SmoI	CTYRAG	4 cut(s)	236, 435, 510, 671
Sse9I	AATT	6 cut(s)	88, 368, 411, 807, 894, 908
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	2 cut(s)	538, 735
SspMI	CTAG	5 cut(s)	41, 243, 258, 956, 1013
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	462, 586
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	4 cut(s)	11, 38, 697, 1003
TaiI	ACGT	1 cut(s)	1046
TaqI	TCGA	2 cut(s)	372, 844
TasI	AATT	6 cut(s)	88, 368, 411, 807, 894, 908
TfiI	GAWTC	5 cut(s)	307, 701, 841, 846, 990
Tru1I	TTAA	4 cut(s)	54, 189, 414, 921
Tru9I	TTAA	4 cut(s)	54, 189, 414, 921
TscAI	CASTG	4 cut(s)	79, 342, 857, 1008
TseI	GCWGC	5 cut(s)	246, 646, 780, 794, 927
TspDTI	ATGAA	7 cut(s)	4, 60, 171, 459, 553, 777, 1036
TspGWI	ACGGA	1 cut(s)	694
TspRI	CASTG	4 cut(s)	79, 342, 857, 1008
Van91I	CCANNNNNTGG	1 cut(s)	523
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	2 cut(s)	88, 368
XbaI	TCTAGA	2 cut(s)	40, 955
XceI	RCATGY	4 cut(s)	421, 434, 509, 641
XmnI	GAANNNNTTC	2 cut(s)	499, 903
XspI	CTAG	5 cut(s)	41, 243, 258, 956, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.