Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

12322386 .. 12323584

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAAGGGGAAGATCAGATATGGAGATGATAAACAACATGGCAAATTGCTTGATTCTTCTATCAAAGGCCCATCAAAACGACACCAAAAGCCGTGTTTTCGCGTGCAAGACATGCAACAAAGAGTTCCCGTCGTTCCAAGCCTTGGGAGGTCACCGAGCCAGCCACCGGCGATCCGCAGCGCTTGAAGGCCACGCACCTCCTTCTCCTAAGAGAGTCAAACCGGTGAAACACGAGTGTCCCATATGTGGTGCTGAGTTCGCGGTAGGGCAGGCCTTAGGTGGTCACATGAGGAAGCATAGAGGTGGATCAGGAGGAGGAGGTGGCCGGAGTTTGGCGCCGGCTACAGCGCCGGTGACGATGAAGAAATCAGGCGGTGGTAATGGAAAAAGAGTTTTGTGTTTGGACTTGAACTTGACGCCTTTAGAGAACGAAGATTTGAAGTTGGAGCTTGGGAGGTTTATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

156

Amino Acids

16.73

Weight (kDa)

9.81

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	33 - 58	4.3e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	78 - 101	9.6e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccII	CGCG	2 cut(s)	104, 263
AciI	CCGC	3 cut(s)	177, 263, 375
AclWI	GGATC	2 cut(s)	168, 316
AcoI	YGGCCR	1 cut(s)	325
AcyI	GRCGYC	2 cut(s)	338, 419
AfeI	AGCGCT	1 cut(s)	183
AfiI	CCNNNNNNNGG	4 cut(s)	145, 168, 248, 334
AgeI	ACCGGT	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	188, 412, 442
AluBI	AGCT	1 cut(s)	451
AluI	AGCT	1 cut(s)	451
AlwI	GGATC	2 cut(s)	168, 316
Aor51HI	AGCGCT	1 cut(s)	183
AoxI	GGCC	4 cut(s)	69, 190, 273, 325
ApeKI	GCWGC	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	223
AspLEI	GCGC	3 cut(s)	184, 340, 352
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	146, 238, 367
AxyI	CCTNAGG	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	3 cut(s)	185, 341, 353
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	339
BsaHI	GRCGYC	2 cut(s)	338, 419
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 168, 248, 334
Bse118I	RCCGGY	4 cut(s)	168, 223, 340, 352
Bse21I	CCTNAGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	4 cut(s)	145, 168, 248, 334
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	2 cut(s)	330, 333
BseXI	GCAGC	1 cut(s)	191
Bsh1236I	CGCG	2 cut(s)	104, 263
BshFI	GGCC	4 cut(s)	71, 192, 275, 327
BshNI	GGYRCC	1 cut(s)	337
BshTI	ACCGGT	1 cut(s)	223
BsiSI	CCGG	5 cut(s)	169, 224, 328, 341, 353
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	145, 168, 248, 334
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	4 cut(s)	71, 192, 275, 327
Bsp143I	GATC	3 cut(s)	14, 173, 308
BspACI	CCGC	3 cut(s)	177, 263, 375
BspANI	GGCC	4 cut(s)	71, 192, 275, 327
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	2 cut(s)	104, 263
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	168, 316
BspT107I	GGYRCC	1 cut(s)	337
BsrFI	RCCGGY	4 cut(s)	168, 223, 340, 352
BssAI	RCCGGY	4 cut(s)	168, 223, 340, 352
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	14, 173, 308
BssNI	GRCGYC	2 cut(s)	338, 419
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	233
BstACI	GRCGYC	2 cut(s)	338, 419
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	4 cut(s)	106, 163, 273, 342
BstDEI	CTNAG	3 cut(s)	210, 255, 277
BstEII	GGTNACC	1 cut(s)	152
BstFNI	CGCG	2 cut(s)	104, 263
BstH2I	RGCGCY	3 cut(s)	185, 341, 353
BstHHI	GCGC	3 cut(s)	184, 340, 352
BstKTI	GATC	3 cut(s)	17, 176, 311
BstMBI	GATC	3 cut(s)	14, 173, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 260
BstNSI	RCATGY	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	2 cut(s)	104, 263
BstV1I	GCAGC	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	277
BsuRI	GGCC	4 cut(s)	71, 192, 275, 327
Cac8I	GCNNGC	4 cut(s)	106, 163, 273, 342
CfoI	GCGC	3 cut(s)	184, 340, 352
Cfr10I	RCCGGY	4 cut(s)	168, 223, 340, 352
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	427
CspAI	ACCGGT	1 cut(s)	223
CviAII	CATG	3 cut(s)	40, 114, 289
DdeI	CTNAG	3 cut(s)	210, 255, 277
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	3 cut(s)	16, 175, 310
DpnII	GATC	3 cut(s)	14, 173, 308
EaeI	YGGCCR	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	275
Eco47III	AGCGCT	1 cut(s)	183
Eco81I	CCTNAGG	1 cut(s)	277
Eco91I	GGTNACC	1 cut(s)	152
EcoO65I	GGTNACC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	144
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	43, 117, 292
FaiI	YATR	7 cut(s)	23, 41, 115, 245, 247, 290, 300
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	3 cut(s)	39, 113, 288
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
GlaI	GCGC	3 cut(s)	183, 339, 351
GluI	GCNGC	1 cut(s)	180
HaeII	RGCGCY	3 cut(s)	185, 341, 353
HaeIII	GGCC	4 cut(s)	71, 192, 275, 327
HapII	CCGG	5 cut(s)	169, 224, 328, 341, 353
HgaI	GACGC	1 cut(s)	427
HhaI	GCGC	3 cut(s)	184, 340, 352
Hin1I	GRCGYC	2 cut(s)	338, 419
Hin1II	CATG	3 cut(s)	43, 117, 292
Hin6I	GCGC	3 cut(s)	182, 338, 350
HinP1I	GCGC	3 cut(s)	182, 338, 350
HinfI	GANTC	2 cut(s)	55, 216
HpaII	CCGG	5 cut(s)	169, 224, 328, 341, 353
HphI	GGTGA	3 cut(s)	146, 238, 367
Hpy188I	TCNGA	2 cut(s)	19, 470
Hpy188III	TCNNGA	1 cut(s)	312
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	182, 213
HpyCH4V	TGCA	2 cut(s)	108, 117
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 260
HpyF3I	CTNAG	3 cut(s)	210, 255, 277
Hsp92I	GRCGYC	2 cut(s)	338, 419
Hsp92II	CATG	3 cut(s)	43, 117, 292
HspAI	GCGC	3 cut(s)	182, 338, 350
KasI	GGCGCC	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	14, 173, 308
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	9 cut(s)	175, 182, 237, 257, 297, 341, 354, 357, 366
Lsp1109I	GCAGC	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	152, 284, 355
MalI	GATC	3 cut(s)	16, 175, 310
MboI	GATC	3 cut(s)	14, 173, 308
MboII	GAAGA	4 cut(s)	24, 50, 376, 446
MluCI	AATT	1 cut(s)	46
Mly113I	GGCGCC	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	8 cut(s)	143, 210, 285, 296, 308, 311, 314, 450
MroNI	GCCGGC	1 cut(s)	340
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	5 cut(s)	169, 224, 328, 341, 353
MvnI	CGCG	2 cut(s)	104, 263
MwoI	GCNNNNNNNGC	2 cut(s)	114, 260
NaeI	GCCGGC	1 cut(s)	342
NarI	GGCGCC	1 cut(s)	338
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	3 cut(s)	14, 173, 308
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	3 cut(s)	43, 117, 292
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	3 cut(s)	152, 284, 355
NspI	RCATGY	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	275
PdiI	GCCGGC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	145
PinAI	ACCGGT	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	224
PluTI	GGCGCC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	224
PspEI	GGTNACC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	303
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	14, 173, 308
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	225
SetI	ASST	7 cut(s)	154, 202, 283, 307, 325, 453, 461
SfcI	CTRYAG	1 cut(s)	345
SfoI	GGCGCC	1 cut(s)	339
SgrAI	CRCCGGYG	2 cut(s)	168, 352
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	46
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	3 cut(s)	177, 263, 375
SspDI	GGCGCC	1 cut(s)	337
StuI	AGGCCT	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	144
TasI	AATT	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	55
TseFI	GTSAC	3 cut(s)	152, 284, 355
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	3 cut(s)	152, 284, 355
TspDTI	ATGAA	1 cut(s)	377
Van91I	CCANNNNNTGG	1 cut(s)	145
XceI	RCATGY	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.