Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8212408.1

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

360 .. 671

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8212408.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggcaggcggagctatagaccttttacagcttcctcagtcgacgcctagctcgccggccaagcccaagacccacgagtgctccatctgcgggcttgaattcccaattgggcaagcgcttggaggacacatgaggagacatagggatgttatgaattctgcttctgcagatcgagatcgggcagcagccatgccggtgttgaagaaatccaatagcagcaaaagggtgtcgtgcttgaatctggatttgaatttggcaccaccgggataccaacgtcattacgatttgacgaagctgcagttgattgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

103

Amino Acids

11.14

Weight (kDa)

9.45

Isoelectric Point (pI)

72.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	41
AciI	CCGC	2 cut(s)	9, 90
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	3 cut(s)	98, 154, 250
AcyI	GRCGYC	1 cut(s)	44
AfeI	AGCGCT	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	4 cut(s)	98, 202, 238, 250
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	4 cut(s)	14, 31, 51, 295
AluI	AGCT	4 cut(s)	14, 31, 51, 295
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	130
Aor51HI	AGCGCT	1 cut(s)	117
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	4 cut(s)	182, 185, 216, 295
ApoI	RAATTY	3 cut(s)	98, 154, 250
AspLEI	GCGC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	259, 292
BanI	GGYRCC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	194, 197, 228, 282
BccI	CCATC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	3 cut(s)	15, 165, 296
BfoI	RGCGCY	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	4 cut(s)	183, 186, 217, 296
BlsI	GCNGC	4 cut(s)	184, 187, 218, 297
Bme1390I	CCNGG	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse118I	RCCGGY	2 cut(s)	55, 193
Bse8I	GATNNNNATC	1 cut(s)	174
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	194, 197, 228, 282
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	3 cut(s)	56, 194, 263
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	169, 175
BspACI	CCGC	2 cut(s)	9, 90
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	258
BspMAI	CTGCAG	2 cut(s)	169, 300
BspT107I	GGYRCC	1 cut(s)	256
BsrFI	RCCGGY	2 cut(s)	55, 193
BssAI	RCCGGY	2 cut(s)	55, 193
BssMI	GATC	2 cut(s)	169, 175
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	5 cut(s)	7, 53, 57, 92, 114
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	2 cut(s)	172, 178
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	169, 175
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 52, 61, 87
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	3 cut(s)	15, 165, 296
BstV1I	GCAGC	4 cut(s)	194, 197, 228, 282
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	5 cut(s)	7, 53, 57, 92, 114
CfoI	GCGC	1 cut(s)	118
Cfr10I	RCCGGY	2 cut(s)	55, 193
CseI	GACGC	1 cut(s)	52
CviAII	CATG	2 cut(s)	130, 190
CviJI	RGCY	8 cut(s)	14, 31, 51, 59, 64, 94, 188, 295
CviKI_1	RGCY	8 cut(s)	14, 31, 51, 59, 64, 94, 188, 295
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	2 cut(s)	171, 177
DpnII	GATC	2 cut(s)	169, 175
EaeI	YGGCCR	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	24
Eco47III	AGCGCT	1 cut(s)	117
EcoRI	GAATTC	2 cut(s)	98, 154
FaeI	CATG	2 cut(s)	133, 193
FaiI	YATR	5 cut(s)	17, 131, 141, 152, 191
FatI	CATG	2 cut(s)	129, 189
FauI	CCCGC	1 cut(s)	83
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	4 cut(s)	183, 186, 217, 296
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	4 cut(s)	183, 186, 217, 296
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	4 cut(s)	183, 186, 217, 296
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	3 cut(s)	56, 194, 263
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	133, 193
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	3 cut(s)	56, 194, 263
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	173, 242
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	167, 298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 52, 61, 87
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	133, 193
HspAI	GCGC	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	169, 175
LmnI	GCTCC	2 cut(s)	11, 86
LpnPI	CCDG	4 cut(s)	69, 207, 227, 276
Lsp1109I	GCAGC	4 cut(s)	194, 197, 228, 282
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	274
MalI	GATC	2 cut(s)	171, 177
MboI	GATC	2 cut(s)	169, 175
MboII	GAAGA	1 cut(s)	214
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	4 cut(s)	98, 105, 154, 250
MnlI	CCTC	3 cut(s)	45, 116, 126
MroNI	GCCGGC	1 cut(s)	55
MslI	CAYNNNNRTG	2 cut(s)	144, 194
MspI	CCGG	3 cut(s)	56, 194, 263
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	11, 52, 61, 87
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	169, 175
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	133, 193
NlaIV	GGNNCC	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	184, 187, 218, 297
PspN4I	GGNNCC	1 cut(s)	258
PstI	CTGCAG	2 cut(s)	169, 300
RseI	CAYNNNNRTG	2 cut(s)	144, 194
SalI	GTCGAC	1 cut(s)	40
SatI	GCNGC	4 cut(s)	183, 186, 217, 296
Sau3AI	GATC	2 cut(s)	169, 175
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	6 cut(s)	16, 24, 33, 53, 277, 297
SfcI	CTRYAG	3 cut(s)	15, 165, 296
SmiMI	CAYNNNNRTG	2 cut(s)	144, 194
Sse9I	AATT	4 cut(s)	98, 105, 154, 250
SsiI	CCGC	2 cut(s)	9, 90
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	41, 172
TasI	AATT	4 cut(s)	98, 105, 154, 250
TfiI	GAWTC	1 cut(s)	238
TseI	GCWGC	4 cut(s)	182, 185, 216, 295
TspDTI	ATGAA	1 cut(s)	167
XapI	RAATTY	3 cut(s)	98, 154, 250
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.