Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

21688838 .. 21689353

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAAAAGAGACAGAGAAGATAAGAAGACCCTGGATTTGGTTAGTTGCTTGATGCTGTTATCCAAAGTCGGCCAAAATGATTCATCCCCAGTCAAAAAACAAAAGACCTCGGACCGTACCTTTGTCTGCAAGACGTGTAATCGCGAGTTCTCATCGTTCCAAGCCCTCGGAGGCCACAGAGCGAGCCACAACAAGCCCAAACTAATGGCAGGCGGAGCTATAGACCTTTTACAGCTTCCTCAGTCAACGCCTAGCTCGCCGGCCAAGCCCAAGACGCACGAGTGCCCCATCTGCGGGCTTGAATTCGCAATTGGGCAAGCGCTTGGAGGACACATGAGGAGACATAGGGATGTTATGAATTCTGCTTCTGCAGATCGAGATCAGGCAGCAACCGTGCCGGTGTTGAAGAAATCTAATAGTAGCAAAAGGGTGTCGTGCTTGAATCTGGATTTGAATTTGGCACCACCGGGATACCAACGTCATTACGATTTGACGAAGCTGCAGTTGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

171

Amino Acids

18.8

Weight (kDa)

9.69

Isoelectric Point (pI)

61.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 65	1.6e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	93 - 117	1.9e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	213, 294
AcoI	YGGCCR	2 cut(s)	70, 261
AcsI	RAATTY	3 cut(s)	302, 358, 454
AfaI	GTAC	1 cut(s)	118
AfeI	AGCGCT	1 cut(s)	321
AfiI	CCNNNNNNNGG	3 cut(s)	37, 293, 294
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	302, 406, 442, 454
AjiI	CACGTC	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	4 cut(s)	218, 235, 255, 499
AluI	AGCT	4 cut(s)	218, 235, 255, 499
Alw26I	GTCTC	2 cut(s)	3, 334
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	3 cut(s)	70, 172, 261
ApeKI	GCWGC	2 cut(s)	386, 499
ApoI	RAATTY	3 cut(s)	302, 358, 454
ArsI	GACNNNNNNTTYG	4 cut(s)	19, 51, 104, 136
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	468
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	287
BaeI	ACNNNNGTAYC	2 cut(s)	463, 496
BanI	GGYRCC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	398, 486
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	3, 334
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	3 cut(s)	219, 369, 500
BfoI	RGCGCY	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	464
BisI	GCNGC	2 cut(s)	387, 500
BlsI	GCNGC	2 cut(s)	388, 501
Bme1390I	CCNGG	2 cut(s)	32, 468
Bme18I	GGWCC	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	2 cut(s)	32, 468
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	30, 108, 166
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 293, 294
Bse118I	RCCGGY	2 cut(s)	259, 397
Bse1I	ACTGG	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	30, 108, 166
BseGI	GGATG	2 cut(s)	83, 355
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	37, 293, 294
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	398, 486
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	72, 174, 263
BshNI	GGYRCC	1 cut(s)	460
BsiSI	CCGG	3 cut(s)	260, 398, 467
BslI	CCNNNNNNNGG	3 cut(s)	37, 293, 294
BsmAI	GTCTC	2 cut(s)	3, 334
BsnI	GGCC	3 cut(s)	72, 174, 263
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	373, 379
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	2 cut(s)	213, 294
BspANI	GGCC	3 cut(s)	72, 174, 263
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	462
BspMAI	CTGCAG	2 cut(s)	373, 504
BspT107I	GGYRCC	1 cut(s)	460
BsrFI	RCCGGY	2 cut(s)	259, 397
BsrI	ACTGG	1 cut(s)	89
BssAI	RCCGGY	2 cut(s)	259, 397
BssECI	CCNNGG	3 cut(s)	30, 108, 166
BssMI	GATC	2 cut(s)	373, 379
BssSI	CACGAG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	116, 394
BstC8I	GCNNGC	6 cut(s)	184, 211, 257, 261, 296, 318
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	83, 355
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	2 cut(s)	376, 382
BstMAI	GTCTC	2 cut(s)	3, 334
BstMBI	GATC	2 cut(s)	373, 379
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 256, 265, 274, 291
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	30, 466
BstSFI	CTRYAG	3 cut(s)	219, 369, 500
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	398, 486
BstV2I	GAAGAC	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	3 cut(s)	72, 174, 263
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	83, 355
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	6 cut(s)	184, 211, 257, 261, 296, 318
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	2 cut(s)	259, 397
Cfr13I	GGNCC	1 cut(s)	112
CpoI	CGGWCCG	1 cut(s)	112
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	117
CspI	CGGWCCG	1 cut(s)	112
CviAII	CATG	1 cut(s)	334
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	375, 381
DpnII	GATC	2 cut(s)	373, 379
EaeI	YGGCCR	2 cut(s)	70, 261
EciI	GGCGGA	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	112
Eco47III	AGCGCT	1 cut(s)	321
EcoRI	GAATTC	2 cut(s)	302, 358
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	337
FaiI	YATR	4 cut(s)	221, 335, 345, 356
FatI	CATG	1 cut(s)	333
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	387, 500
FokI	GGATG	2 cut(s)	70, 362
Fsp4HI	GCNGC	2 cut(s)	387, 500
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	2 cut(s)	387, 500
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	72, 174, 263
HapII	CCGG	3 cut(s)	260, 398, 467
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	80, 442
HpaII	CCGG	3 cut(s)	260, 398, 467
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	112, 170
Hpy188III	TCNNGA	3 cut(s)	143, 377, 446
Hpy8I	GTNNAC	1 cut(s)	246
HpyCH4III	ACNGT	2 cut(s)	116, 394
HpyCH4IV	ACGT	2 cut(s)	134, 478
HpyCH4V	TGCA	3 cut(s)	129, 371, 502
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 256, 265, 274, 291
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	2 cut(s)	134, 478
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	1 cut(s)	320
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	373, 379
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	9 cut(s)	17, 44, 102, 195, 273, 368, 411, 431, 480
Lsp1109I	GCAGC	2 cut(s)	398, 486
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	2 cut(s)	134, 478
MalI	GATC	2 cut(s)	375, 381
MboI	GATC	2 cut(s)	373, 379
MboII	GAAGA	3 cut(s)	29, 37, 418
MfeI	CAATTG	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	4 cut(s)	302, 309, 358, 454
MnlI	CCTC	6 cut(s)	118, 164, 176, 249, 320, 330
MroNI	GCCGGC	1 cut(s)	259
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	3 cut(s)	260, 398, 467
MspR9I	CCNGG	2 cut(s)	32, 468
MunI	CAATTG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	215, 256, 265, 274, 291
NaeI	GCCGGC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	373, 379
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	462
NruI	TCGCGA	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	80, 442
PkrI	GCNGC	2 cut(s)	388, 501
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	112
PstI	CTGCAG	2 cut(s)	373, 504
RruI	TCGCGA	1 cut(s)	144
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	348
Rsr2I	CGGWCCG	1 cut(s)	112
RsrII	CGGWCCG	1 cut(s)	112
SatI	GCNGC	2 cut(s)	387, 500
Sau3AI	GATC	2 cut(s)	373, 379
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	32, 468
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	9 cut(s)	110, 122, 137, 220, 228, 237, 257, 481, 501
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	3 cut(s)	219, 369, 500
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	4 cut(s)	302, 309, 358, 454
SsiI	CCGC	2 cut(s)	213, 294
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	30, 466
TaaI	ACNGT	2 cut(s)	116, 394
TaiI	ACGT	2 cut(s)	137, 481
TaqI	TCGA	1 cut(s)	376
TasI	AATT	4 cut(s)	302, 309, 358, 454
TfiI	GAWTC	2 cut(s)	80, 442
TseI	GCWGC	2 cut(s)	386, 499
TspDTI	ATGAA	3 cut(s)	17, 72, 371
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	3 cut(s)	302, 358, 454
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.