Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

63015862 .. 63020400

Gene Structure 4539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG452300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAGAGAGGCAGAGAAGATGATCAGCAGACCCTGGATTTGATCAATTGTTTGATGCTACTATCCAAAGTAGACCAAAATGACTCCTCCTCAATCAAAAAACAAAAGATCTCGGACCGTGTCTTTGTTTGTAAGACGTGTAATCGGGAGTTCTCGTCGTTCCAAGCCCTCGGAGGCCATAGAGCGAGCCACAAGAAACCGAGCGGTGCAGACCAGTTACAGCTTGCACAGCCGAGCTCGCCGGCAAAGCCCAAGAAGCACGAGTGTCCGATCTGCAGGATGGAATTCGCAGTTGGTCAAGCGCTTGGGGGACACATGAGGAGACATAGAGATGTTATGAGTTCTGCTGCGGAAAGGATTCGGGCGGCAGCTGTGCCGGTATTGAAGAAATCAAATAGTAGTAAAAGGTTCTCCACCGCCTCCGCCGCCACCACCAGGGTTGTGGCGCTTGGGCTGGGACTGAAGAAAGTGCTGCTCCTGCTCAGCATAAGTCACTGGCATGAAAAAGTTTGGATTTTAATGAGGGAGCTAAGACTGGTGCTGGTTCATGAACAGCTGTGGGTTCAGAATCTGAGGCTTCTCATCTGGGTTCTCAAACTGCTGGTGATTCTGATAAACCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

208

Amino Acids

23.46

Weight (kDa)

10.29

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 67	2.7e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	87 - 111	8.8e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	6 cut(s)	204, 350, 365, 417, 423, 426
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	482
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	435
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	385
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	2 cut(s)	33, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	5 cut(s)	223, 237, 371, 529, 556
AluI	AGCT	5 cut(s)	223, 237, 371, 529, 556
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	316
AlwNI	CAGNNNCTG	2 cut(s)	34, 571
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	3 cut(s)	347, 368, 472
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 107, 139
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	304, 448
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	239
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	334, 380, 459
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	2 cut(s)	35, 436
BclI	TGATCA	2 cut(s)	22, 42
BcoDI	GTCTC	1 cut(s)	316
BfmI	CTRYAG	1 cut(s)	274
BfoI	RGCGCY	2 cut(s)	305, 449
BglII	AGATCT	1 cut(s)	108
BisI	GCNGC	5 cut(s)	348, 366, 369, 426, 473
BlpI	GCTNAGC	1 cut(s)	482
BlsI	GCNGC	5 cut(s)	349, 367, 370, 427, 474
Bme1390I	CCNGG	2 cut(s)	35, 436
Bme18I	GGWCC	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	35, 436
BmsI	GCATC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	33, 169, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse118I	RCCGGY	2 cut(s)	241, 376
Bse1I	ACTGG	3 cut(s)	214, 500, 540
BseBI	CCWGG	2 cut(s)	35, 436
BseDI	CCNNGG	3 cut(s)	33, 169, 435
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	496, 563
BseNI	ACTGG	3 cut(s)	214, 500, 540
BseRI	GAGGAG	3 cut(s)	76, 79, 334
BseXI	GCAGC	3 cut(s)	334, 380, 459
BseYI	CCCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	242, 377
BslFI	GGGAC	2 cut(s)	324, 471
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	324, 471
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	4 cut(s)	22, 42, 108, 270
Bsp1720I	GCTNAGC	1 cut(s)	482
BspACI	CCGC	6 cut(s)	204, 350, 365, 417, 423, 426
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	495, 564
BspHI	TCATGA	2 cut(s)	547, 623
BspMAI	CTGCAG	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	204
BsrFI	RCCGGY	2 cut(s)	241, 376
BsrI	ACTGG	3 cut(s)	214, 500, 540
BssAI	RCCGGY	2 cut(s)	241, 376
BssECI	CCNNGG	3 cut(s)	33, 169, 435
BssMI	GATC	4 cut(s)	22, 42, 108, 270
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	35, 436
Bst4CI	ACNGT	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	187, 225, 239, 243
BstDEI	CTNAG	3 cut(s)	482, 530, 572
BstF5I	GGATG	1 cut(s)	285
BstH2I	RGCGCY	2 cut(s)	305, 449
BstHHI	GCGC	2 cut(s)	304, 448
BstKTI	GATC	4 cut(s)	25, 45, 111, 273
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	4 cut(s)	22, 42, 108, 270
BstMWI	GCNNNNNNNGC	6 cut(s)	229, 238, 247, 256, 425, 478
BstNI	CCWGG	2 cut(s)	35, 436
BstSCI	CCNGG	2 cut(s)	33, 434
BstSFI	CTRYAG	1 cut(s)	274
BstV1I	GCAGC	3 cut(s)	334, 380, 459
BstX2I	RGATCY	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	4 cut(s)	187, 225, 239, 243
CaiI	CAGNNNCTG	2 cut(s)	34, 571
CciI	TCATGA	2 cut(s)	547, 623
CfoI	GCGC	2 cut(s)	304, 448
Cfr10I	RCCGGY	2 cut(s)	241, 376
Cfr13I	GGNCC	1 cut(s)	115
CpoI	CGGWCCG	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CspI	CGGWCCG	1 cut(s)	115
CviAII	CATG	4 cut(s)	316, 500, 548, 624
DdeI	CTNAG	3 cut(s)	482, 530, 572
DpnI	GATC	4 cut(s)	24, 44, 110, 272
DpnII	GATC	4 cut(s)	22, 42, 108, 270
EciI	GGCGGA	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	115
Eco47III	AGCGCT	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	33, 434
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	4 cut(s)	319, 503, 551, 627
FaiI	YATR	8 cut(s)	180, 317, 327, 338, 488, 501, 549, 625
FaqI	GGGAC	2 cut(s)	324, 471
FatI	CATG	4 cut(s)	315, 499, 547, 623
FbaI	TGATCA	2 cut(s)	22, 42
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	348, 366, 369, 426, 473
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	5 cut(s)	348, 366, 369, 426, 473
GlaI	GCGC	2 cut(s)	303, 447
GluI	GCNGC	5 cut(s)	348, 366, 369, 426, 473
GsaI	CCCAGC	1 cut(s)	458
HaeII	RGCGCY	2 cut(s)	305, 449
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	242, 377
HhaI	GCGC	2 cut(s)	304, 448
Hin1II	CATG	4 cut(s)	319, 503, 551, 627
Hin6I	GCGC	2 cut(s)	302, 446
HinP1I	GCGC	2 cut(s)	302, 446
HinfI	GANTC	4 cut(s)	83, 358, 568, 607
HpaII	CCGG	2 cut(s)	242, 377
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	6 cut(s)	115, 173, 270, 567, 573, 612
Hpy188III	TCNNGA	3 cut(s)	146, 548, 624
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	209, 227, 276
HpyF10VI	GCNNNNNNNGC	6 cut(s)	229, 238, 247, 256, 425, 478
HpyF3I	CTNAG	3 cut(s)	482, 530, 572
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	4 cut(s)	319, 503, 551, 627
HspAI	GCGC	2 cut(s)	302, 446
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	2 cut(s)	22, 42
Kzo9I	GATC	4 cut(s)	22, 42, 108, 270
LmnI	GCTCC	2 cut(s)	480, 526
Lsp1109I	GCAGC	3 cut(s)	334, 380, 459
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	216, 491
MalI	GATC	4 cut(s)	24, 44, 110, 272
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	4 cut(s)	22, 42, 108, 270
MboII	GAAGA	4 cut(s)	16, 29, 397, 475
MfeI	CAATTG	1 cut(s)	46
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	2 cut(s)	46, 284
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	8 cut(s)	97, 100, 167, 179, 312, 430, 516, 567
MroNI	GCCGGC	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	2 cut(s)	330, 498
MspA1I	CMGCKG	2 cut(s)	371, 556
MspI	CCGG	2 cut(s)	242, 377
MspR9I	CCNGG	2 cut(s)	35, 436
MunI	CAATTG	1 cut(s)	46
MvaI	CCWGG	2 cut(s)	35, 436
MwoI	GCNNNNNNNGC	6 cut(s)	229, 238, 247, 256, 425, 478
NaeI	GCCGGC	1 cut(s)	243
NdeII	GATC	4 cut(s)	22, 42, 108, 270
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	4 cut(s)	319, 503, 551, 627
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	491
PagI	TCATGA	2 cut(s)	547, 623
PdiI	GCCGGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	358, 568, 607
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	5 cut(s)	349, 367, 370, 427, 474
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	33, 434
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	2 cut(s)	33, 434
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	278
PstNI	CAGNNNCTG	2 cut(s)	34, 571
PsuI	RGATCY	1 cut(s)	108
PsyI	GACNNNGTC	1 cut(s)	119
PvuII	CAGCTG	2 cut(s)	371, 556
RseI	CAYNNNNRTG	2 cut(s)	330, 498
Rsr2I	CGGWCCG	1 cut(s)	115
RsrII	CGGWCCG	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	5 cut(s)	348, 366, 369, 426, 473
Sau3AI	GATC	4 cut(s)	22, 42, 108, 270
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	35, 436
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	7 cut(s)	140, 225, 239, 373, 410, 531, 558
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	2 cut(s)	330, 498
Sse9I	AATT	2 cut(s)	46, 284
SsiI	CCGC	6 cut(s)	204, 350, 365, 417, 423, 426
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	33, 434
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	140
TasI	AATT	2 cut(s)	46, 284
TauI	GCSGC	2 cut(s)	368, 428
TfiI	GAWTC	3 cut(s)	358, 568, 607
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	1 cut(s)	500
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	3 cut(s)	347, 368, 472
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	5 cut(s)	17, 516, 536, 564, 612
TspRI	CASTG	1 cut(s)	500
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.