Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

16925881 .. 16926883

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTTGCGAGAAGTGAGGAAATTGTGATAGTGGAAGAAGATACGACTGCGAAATGTTTGATGTTGTTATCAAGAGTCGGAGAATGCGGCGGCGGCTGCGGGGGAGATGAACGTGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTCTCATCGTTTCAAGCTTTGGGAGGTCATCGTGCAAGCCACAAGAAACTTATCAACAGTGACAATCCATCACTTCTTGGATCCTTGTCCAACAAGAAAACTAAAACGTCTCATCCTTGTCCGATATGTGGAGTGAAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAGACATAGGAACGAGAAAGTCTCAGGCTCGTTGGTTACACGTTCTTTTCTACCGGAGACGACGACGGTGACGGCTTTGAAGAAATTTAGTAGTGGGAAGAGAGTGGCTTGTTTGGATTTGGACTTAGATTCGATGGAGAGTTTGGTCAATTGGAAGTTGGAGTTGGGAAGAACGATTTCTTGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

168

Amino Acids

18.36

Weight (kDa)

9.22

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	39 - 64	4e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	86 - 109	3.6e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	87, 90, 93, 99
AclWI	GGATC	2 cut(s)	219, 232
AcsI	RAATTY	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	2 cut(s)	112, 356
AgsI	TTSAA	2 cut(s)	158, 397
AjuI	GAANNNNNNNTTGG	3 cut(s)	464, 481, 496
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	2 cut(s)	161, 299
AluI	AGCT	2 cut(s)	161, 299
Alw26I	GTCTC	4 cut(s)	258, 313, 343, 368
AlwI	GGATC	2 cut(s)	219, 232
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	3 cut(s)	220, 283, 445
BceAI	ACGGC	1 cut(s)	405
BcoDI	GTCTC	4 cut(s)	258, 313, 343, 368
BisI	GCNGC	4 cut(s)	88, 91, 94, 97
BlsI	GCNGC	4 cut(s)	89, 92, 95, 98
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	4 cut(s)	258, 313, 343, 368
BsmBI	CGTCTC	2 cut(s)	258, 368
BsmFI	GGGAC	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	4 cut(s)	87, 90, 93, 99
BspCNI	CTCAG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	2 cut(s)	219, 232
BssMI	GATC	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	203, 385
Bst6I	CTCTTC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	340, 442
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	4 cut(s)	258, 313, 343, 368
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 96
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	181
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	7 cut(s)	96, 161, 183, 299, 345, 392, 425
CviKI_1	RGCY	7 cut(s)	96, 161, 183, 299, 345, 392, 425
DdeI	CTNAG	2 cut(s)	340, 442
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Esp3I	CGTCTC	2 cut(s)	258, 368
FaeI	CATG	1 cut(s)	316
FaiI	YATR	3 cut(s)	271, 314, 324
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	4 cut(s)	88, 91, 94, 97
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	4 cut(s)	88, 91, 94, 97
GluI	GCNGC	4 cut(s)	88, 91, 94, 97
HapII	CCGG	1 cut(s)	371
Hin1II	CATG	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	2 cut(s)	75, 446
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	397
Hpy188I	TCNGA	4 cut(s)	80, 122, 267, 288
Hpy188III	TCNNGA	1 cut(s)	72
Hpy99I	CGWCG	2 cut(s)	382, 385
HpyCH4III	ACNGT	2 cut(s)	203, 385
HpyCH4IV	ACGT	3 cut(s)	112, 251, 358
HpyCH4V	TGCA	2 cut(s)	126, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 96
HpyF3I	CTNAG	2 cut(s)	340, 442
HpySE526I	ACGT	3 cut(s)	112, 251, 358
Hsp92II	CATG	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	224
LpnPI	CCDG	2 cut(s)	327, 384
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	113
MaeII	ACGT	3 cut(s)	112, 251, 358
MaeIII	GTNAC	4 cut(s)	203, 308, 352, 385
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	5 cut(s)	47, 50, 409, 427, 498
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	1 cut(s)	224
MluCI	AATT	3 cut(s)	21, 401, 466
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	3 cut(s)	58, 258, 456
MnlI	CCTC	3 cut(s)	10, 161, 309
MroXI	GAANNNNTTC	1 cut(s)	493
MseI	TTAA	2 cut(s)	138, 505
MspI	CCGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	93, 96
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	3 cut(s)	203, 308, 385
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	89, 92, 95, 98
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	138, 505
SatI	GCNGC	4 cut(s)	88, 91, 94, 97
Sau3AI	GATC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	84
SetI	ASST	6 cut(s)	115, 163, 172, 254, 301, 361
SfaNI	GCATC	1 cut(s)	113
Sse9I	AATT	3 cut(s)	21, 401, 466
SsiI	CCGC	4 cut(s)	87, 90, 93, 99
TaaI	ACNGT	2 cut(s)	203, 385
TaiI	ACGT	3 cut(s)	115, 254, 361
TaqI	TCGA	1 cut(s)	449
TasI	AATT	3 cut(s)	21, 401, 466
TauI	GCSGC	3 cut(s)	90, 93, 96
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	2 cut(s)	138, 505
Tru9I	TTAA	2 cut(s)	138, 505
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	3 cut(s)	203, 308, 385
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	3 cut(s)	203, 308, 385
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.