Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

43235399 .. 43235932

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG297100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGAATTGCTTGATGCTGCTCTCTCGAGGCAACGACTACGACTCGTTGATCTCCACCTCATCATCTTCCTCCCCTAGCCGCGTCTTCGAGTGCAAGACTTGTAATCGTCAGTTCCCTTCGTTCCAGGCGCTTGGAGGACACAGAGCGAGTCACAAGAAGCCGAGGCTAGCTGGAGGAGACGGGTCGAGTTCCGACAGCCAGTCGTCTTCGCCGAGCAAACCCAAGACTCACGAGTGCAACATATGCGGGTTGGAGTTTGCTATAGGTCAGGCCTTGGGGGGTCACATGAGGAGGCACAGAGCAGCCGTGACTGATAATAACAATCATCACCAGAATAATAACGGAGTACAATCGAATTCTATGATGGGTTTGAATTCTAATCTGGGCCAAGTAGTTGTCCCGGTTTTGAAGAAGACGAATAGCAGCAGGAGAGTTTTGTGTTTGGATCTCAACTTGACGCCCTTTGAGAATGACATGGAGATTCTTGGAATAGGGAAAACAACTCCTCCTCTTGTTGAGTTTATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

177

Amino Acids

19.16

Weight (kDa)

9.04

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	29 - 55	4e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	78 - 102	2.8e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	2 cut(s)	82, 249
AclWI	GGATC	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	358, 376
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	376, 412
AhdI	GACNNNNNGTC	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	456
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	2 cut(s)	273, 388
ApeKI	GCWGC	3 cut(s)	19, 305, 426
ApoI	RAATTY	2 cut(s)	358, 376
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	323
AsuNHI	GCTAGC	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	27
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	3 cut(s)	79, 201, 422
BbvI	GCAGC	3 cut(s)	6, 317, 438
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	3 cut(s)	78, 170, 532
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	4 cut(s)	20, 82, 306, 427
BlsI	GCNGC	4 cut(s)	21, 83, 307, 428
Bme1390I	CCNGG	2 cut(s)	128, 404
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	388
BmrFI	CCNGG	2 cut(s)	128, 404
BmsI	GCATC	1 cut(s)	6
BmtI	GCTAGC	1 cut(s)	173
BpiI	GAAGAC	3 cut(s)	79, 201, 422
BpmI	CTGGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	164, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	164, 276
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	4 cut(s)	192, 307, 498, 501
BseXI	GCAGC	3 cut(s)	6, 317, 438
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	275, 390
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	275, 390
BsoBI	CYCGRG	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	51, 448
BspACI	CCGC	2 cut(s)	82, 249
BspANI	GGCC	2 cut(s)	275, 390
BspFNI	CGCG	1 cut(s)	84
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	164, 276
BssMI	GATC	2 cut(s)	51, 448
BssNI	GRCGYC	1 cut(s)	461
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	54, 451
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	51, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	126, 402
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	6, 317, 438
BstV2I	GAAGAC	3 cut(s)	79, 201, 422
BstX2I	RGATCY	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	275, 390
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	2 cut(s)	73, 469
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	289, 478
CviJI	RGCY	8 cut(s)	81, 163, 169, 173, 201, 275, 308, 390
CviKI_1	RGCY	8 cut(s)	81, 163, 169, 173, 201, 275, 308, 390
CviQI	GTAC	1 cut(s)	350
DpnI	GATC	2 cut(s)	53, 450
DpnII	GATC	2 cut(s)	51, 448
DriI	GACNNNNNGTC	1 cut(s)	202
Eam1105I	GACNNNNNGTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	27
EcoRI	GAATTC	2 cut(s)	358, 376
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	292, 481
FaiI	YATR	6 cut(s)	245, 247, 266, 290, 365, 479
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	2 cut(s)	288, 477
FauI	CCCGC	1 cut(s)	242
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	4 cut(s)	20, 82, 306, 427
Fsp4HI	GCNGC	4 cut(s)	20, 82, 306, 427
FspBI	CTAG	3 cut(s)	78, 170, 532
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	4 cut(s)	20, 82, 306, 427
GsuI	CTGGAG	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	275, 390
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	2 cut(s)	73, 469
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	2 cut(s)	292, 481
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	4 cut(s)	44, 151, 229, 484
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	27, 233
HpyAV	CCTTC	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	96, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	2 cut(s)	292, 481
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	51, 448
LpnPI	CCDG	9 cut(s)	113, 140, 159, 215, 257, 347, 371, 415, 417
Lsp1109I	GCAGC	3 cut(s)	6, 317, 438
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	3 cut(s)	78, 170, 532
MaeIII	GTNAC	3 cut(s)	152, 284, 310
MalI	GATC	2 cut(s)	53, 450
MboI	GATC	2 cut(s)	51, 448
MboII	GAAGA	5 cut(s)	60, 79, 201, 424, 427
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	3 cut(s)	7, 358, 376
MlyI	GAGTC	3 cut(s)	38, 160, 223
MmeI	TCCRAC	2 cut(s)	219, 234
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	128, 404
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	404
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	2 cut(s)	51, 448
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	292, 481
NmeAIII	GCCGAG	2 cut(s)	189, 240
NmuCI	GTSAC	3 cut(s)	152, 284, 310
PaeR7I	CTCGAG	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	21, 83, 307, 428
PleI	GAGTC	3 cut(s)	38, 159, 223
PpsI	GAGTC	3 cut(s)	38, 159, 223
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SatI	GCNGC	4 cut(s)	20, 82, 306, 427
Sau3AI	GATC	2 cut(s)	51, 448
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	3 cut(s)	38, 160, 223
ScrFI	CCNGG	2 cut(s)	128, 404
SetI	ASST	3 cut(s)	62, 175, 271
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	264
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	3 cut(s)	7, 358, 376
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	2 cut(s)	82, 249
SspMI	CTAG	3 cut(s)	78, 170, 532
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	126, 402
StyI	CCWWGG	1 cut(s)	276
TaqI	TCGA	4 cut(s)	28, 90, 188, 356
TasI	AATT	3 cut(s)	7, 358, 376
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	484
TseFI	GTSAC	3 cut(s)	152, 284, 310
TseI	GCWGC	3 cut(s)	19, 305, 426
Tsp45I	GTSAC	3 cut(s)	152, 284, 310
TspGWI	ACGGA	1 cut(s)	360
XapI	RAATTY	2 cut(s)	358, 376
XhoI	CTCGAG	1 cut(s)	27
XspI	CTAG	3 cut(s)	78, 170, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.