Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

44136163 .. 44136381

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGATGCTTCTTTGGCTAACTTTGAGTGGTAATGATGGAGTAGTAGTGGTGGTGATGGAGTTTATGGTGGTGGAAGATGGTAATTGTGGTGGTGATGATGGAGGAGATGGAGTAGTAAAGGGAGTATGGGTATTATGGGTTTGGATTTTGGGAGGTGAATATGGAGGTTTTGTGGTGGAGATGGAGATAGAAAAGAGATGCAATGGGTGGTATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

72

Amino Acids

7.87

Weight (kDa)

4.05

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AsuHPI	GGTGA	3 cut(s)	64, 104, 167
BccI	CCATC	6 cut(s)	29, 49, 71, 92, 101, 175
BmsI	GCATC	1 cut(s)	188
BsaXI	ACNNNNNCTCC	8 cut(s)	30, 60, 96, 114, 126, 144, 156, 186
Bse3DI	GCAATG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	13
CviJI	RGCY	1 cut(s)	16
CviKI_1	RGCY	1 cut(s)	16
FaiI	YATR	5 cut(s)	65, 127, 136, 162, 213
HphI	GGTGA	3 cut(s)	64, 104, 167
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	188
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	1 cut(s)	82
MnlI	CCTC	3 cut(s)	95, 146, 158
MwoI	GCNNNNNNNGC	1 cut(s)	13
SetI	ASST	2 cut(s)	157, 169
SfaNI	GCATC	1 cut(s)	188
Sse9I	AATT	1 cut(s)	82
TasI	AATT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.