Rh1AG335700

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
56987585 .. 56999265
11681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG335700.1

Sequence Viewer

Length: 948 bp
ATGCCTCCCAGTTGCTCGTCCTCGTCTCGATTGCAAATCCTCCCTCAAAGTCTCACTCTCTCAGTCTCCTTCGATGCGAACACAGCTGAGTGTAGTTCAGCGAACACAGTTGCAACCAGCAACCTGTCTCCGCCAGTCCACCTCTCCGGTCTCCGAGCTCCGCCTTCAGGCTCCAGATGGGGACCGCAGCTAGACCAAGCTACTTACAAGAACTGTCAGCGTCTTTATCTTTCCGAACAGGTTTGTGGGAAACTTGCTAAAAGGGCAGACTGTTGGTGTGATTGGAGCTGGTCGTATAGGGTCTGCATATGCCAGAATGATGTGTGCTTTATTAACTATACTCATGGGACTAAAATCTGGGAATGTAACGTCACCATGAAGAGAAGCATCACAGAGCTCGATCACAGCGTAACCATGGCGAATTGCTTGATGCTGCTCTCTCGAGGCAACGACTACGACTCGTTGATCTCCACCTCATCAGCTTCCTCCCCTAGCCGCGTCTTCGAGTGCAAGACTTGTAATCGTCAGTTCCCTTCGTTCCAGGCGCTTGGAGGACACAGAGCGAGTCACAAGAAGCCGAGGCTAGCCGGAGGAGACGGGTCGAGTTCCGACAGCCAGTCGTCTTCGCCGAGCAAACCCAAGACTCACGAGTGCAACATATGCGGGTTGGAGTTTGCTATAGGTCAGGCCTTGGGGGGTCACATGAGGAGGCACAGAGCAGCCGTGACTCATAATAACAATCATCACCAGAATAATAACGGAGTACAATCGAATTCTATGATGGGTTTGAATTCTAATCTGGGCCAAGTAGTTGTCCCGGTTTTGAAGAAGACGAATAGCAGCAGGAGAATTTTGTGTTTGGATCTCAACTTGACGCCCTTTGAGAATGACATGGAGATTCTTGGAATAGGGAAAAAAACTCCTCCTCTTGTTGAGTTTATTTTCTAG

Protein Analysis

315

Amino Acids

34.53

Weight (kDa)

8.86

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 167 - 193 8.9e-13 C2H2-type zinc finger
zf-C2H2_6 PF13912 216 - 240 6.3e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 498
AciI CCGC 5 cut(s) 131, 161, 185, 496, 663
AclWI GGATC 1 cut(s) 870
AcsI RAATTY 3 cut(s) 772, 790, 849
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 875
AfaI GTAC 1 cut(s) 765
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 2 cut(s) 790, 826
AhdI GACNNNNNGTC 1 cut(s) 616
AjnI CCWGG 1 cut(s) 540
AluBI AGCT 7 cut(s) 86, 158, 190, 200, 288, 397, 482
AluI AGCT 7 cut(s) 86, 158, 190, 200, 288, 397, 482
Alw21I GWGCWC 2 cut(s) 160, 399
Alw26I GTCTC 6 cut(s) 30, 56, 70, 132, 155, 588
AlwI GGATC 1 cut(s) 870
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 2 cut(s) 687, 802
ApeKI GCWGC 4 cut(s) 187, 433, 719, 840
ApoI RAATTY 3 cut(s) 772, 790, 849
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 2 cut(s) 182, 802
AsuC2I CCSGG 1 cut(s) 818
AsuHPI GGTGA 2 cut(s) 364, 737
AsuNHI GCTAGC 1 cut(s) 583
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 1 cut(s) 182
BanII GRGCYC 2 cut(s) 160, 399
BauI CACGAG 1 cut(s) 647
BbsI GAAGAC 3 cut(s) 493, 615, 836
Bbv12I GWGCWC 2 cut(s) 160, 399
BbvI GCAGC 4 cut(s) 199, 420, 731, 852
BccI CCATC 2 cut(s) 171, 775
BceAI ACGGC 1 cut(s) 707
BciT130I CCWGG 1 cut(s) 542
BcnI CCSGG 1 cut(s) 818
BcoDI GTCTC 6 cut(s) 30, 56, 70, 132, 155, 588
BfaI CTAG 4 cut(s) 191, 492, 584, 946
BfmI CTRYAG 1 cut(s) 678
BfoI RGCGCY 1 cut(s) 548
BisI GCNGC 5 cut(s) 188, 434, 496, 720, 841
BlsI GCNGC 5 cut(s) 189, 435, 497, 721, 842
Bme1390I CCNGG 2 cut(s) 542, 818
Bme18I GGWCC 1 cut(s) 182
BmeRI GACNNNNNGTC 1 cut(s) 616
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 2 cut(s) 182, 802
BmiI GGNNCC 2 cut(s) 172, 183
BmrFI CCNGG 2 cut(s) 542, 818
BmrI ACTGGG 1 cut(s) 3
BmsI GCATC 3 cut(s) 64, 396, 420
BmtI GCTAGC 1 cut(s) 587
BmuI ACTGGG 1 cut(s) 3
BpiI GAAGAC 3 cut(s) 493, 615, 836
BpmI CTGGAG 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 818
BsaHI GRCGYC 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 414, 578, 690
BsaWI WCCGGW 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 3 cut(s) 9, 134, 616
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 3 cut(s) 414, 578, 690
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 75, 78
BseNI ACTGG 3 cut(s) 9, 134, 616
BseRI GAGGAG 4 cut(s) 606, 721, 912, 915
BseXI GCAGC 4 cut(s) 199, 420, 731, 852
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 2 cut(s) 689, 804
BsiHKAI GWGCWC 2 cut(s) 160, 399
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 3 cut(s) 147, 588, 818
BslFI GGGAC 3 cut(s) 195, 361, 800
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 6 cut(s) 30, 56, 70, 132, 155, 588
BsmBI CGTCTC 2 cut(s) 30, 588
BsmFI GGGAC 3 cut(s) 195, 361, 800
BsnI GGCC 2 cut(s) 689, 804
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 160, 399
Bsp143I GATC 3 cut(s) 400, 465, 862
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 5 cut(s) 131, 161, 185, 496, 663
BspANI GGCC 2 cut(s) 689, 804
BspCNI CTCAG 2 cut(s) 74, 79
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 172, 183
BspOI GCTAGC 1 cut(s) 587
BspPI GGATC 1 cut(s) 870
BspTNI GGTCTC 1 cut(s) 155
BsrI ACTGG 3 cut(s) 9, 134, 616
BssECI CCNNGG 3 cut(s) 414, 578, 690
BssMI GATC 3 cut(s) 400, 465, 862
BssNI GRCGYC 1 cut(s) 875
BssSI CACGAG 1 cut(s) 647
BssT1I CCWWGG 2 cut(s) 414, 690
Bst2BI CACGAG 1 cut(s) 647
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 3 cut(s) 109, 215, 272
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 875
BstAPI GCANNNNNTGC 1 cut(s) 660
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 2 cut(s) 61, 87
BstDSI CCRYGG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 498
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 3 cut(s) 403, 468, 865
BstMAI GTCTC 6 cut(s) 30, 56, 70, 132, 155, 588
BstMBI GATC 3 cut(s) 400, 465, 862
BstMWI GCNNNNNNNGC 3 cut(s) 83, 263, 660
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 540, 816
BstSFI CTRYAG 1 cut(s) 678
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 4 cut(s) 199, 420, 731, 852
BstV2I GAAGAC 3 cut(s) 493, 615, 836
BstX2I RGATCY 1 cut(s) 862
BstXI CCANNNNNNTGG 1 cut(s) 548
BstYI RGATCY 1 cut(s) 862
BsuRI GGCC 2 cut(s) 689, 804
BtgI CCRYGG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 585
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 182, 802
CseI GACGC 3 cut(s) 209, 487, 883
Csp6I GTAC 1 cut(s) 764
CviAII CATG 5 cut(s) 344, 376, 415, 703, 892
CviQI GTAC 1 cut(s) 764
DdeI CTNAG 2 cut(s) 61, 87
DpnI GATC 3 cut(s) 402, 467, 864
DpnII GATC 3 cut(s) 400, 465, 862
DriI GACNNNNNGTC 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 374
Eam1105I GACNNNNNGTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 374
EciI GGCGGA 2 cut(s) 120, 150
Ecl136II GAGCTC 2 cut(s) 158, 397
Eco130I CCWWGG 2 cut(s) 414, 690
Eco147I AGGCCT 1 cut(s) 689
Eco24I GRGCYC 2 cut(s) 160, 399
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 182
Eco53kI GAGCTC 2 cut(s) 158, 397
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 441
EcoICRI GAGCTC 2 cut(s) 158, 397
EcoRI GAATTC 2 cut(s) 772, 790
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 414, 690
EcoT38I GRGCYC 2 cut(s) 160, 399
ErhI CCWWGG 2 cut(s) 414, 690
Esp3I CGTCTC 2 cut(s) 30, 588
FaeI CATG 5 cut(s) 347, 379, 418, 706, 895
FaqI GGGAC 3 cut(s) 195, 361, 800
FatI CATG 5 cut(s) 343, 375, 414, 702, 891
FauI CCCGC 1 cut(s) 656
FauNDI CATATG 2 cut(s) 308, 659
Fnu4HI GCNGC 5 cut(s) 188, 434, 496, 720, 841
FriOI GRGCYC 2 cut(s) 160, 399
Fsp4HI GCNGC 5 cut(s) 188, 434, 496, 720, 841
FspBI CTAG 4 cut(s) 191, 492, 584, 946
GlaI GCGC 1 cut(s) 546
GluI GCNGC 5 cut(s) 188, 434, 496, 720, 841
GsuI CTGGAG 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 2 cut(s) 689, 804
HapII CCGG 3 cut(s) 147, 588, 818
HgaI GACGC 3 cut(s) 209, 487, 883
HhaI GCGC 1 cut(s) 547
Hin1I GRCGYC 1 cut(s) 875
Hin1II CATG 5 cut(s) 347, 379, 418, 706, 895
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HinfI GANTC 5 cut(s) 458, 565, 643, 727, 898
HpaII CCGG 3 cut(s) 147, 588, 818
HphI GGTGA 2 cut(s) 364, 737
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 155, 235, 610
Hpy188III TCNNGA 4 cut(s) 27, 174, 441, 647
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 79, 174, 543
HpyCH4III ACNGT 3 cut(s) 109, 215, 272
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 5 cut(s) 34, 113, 306, 510, 654
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 263, 660
HpyF3I CTNAG 2 cut(s) 61, 87
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 875
Hsp92II CATG 5 cut(s) 347, 379, 418, 706, 895
HspAI GCGC 1 cut(s) 545
Kzo9I GATC 3 cut(s) 400, 465, 862
LmnI GCTCC 3 cut(s) 163, 176, 285
Lsp1109I GCAGC 4 cut(s) 199, 420, 731, 852
LweI GCATC 3 cut(s) 64, 396, 420
MaeI CTAG 4 cut(s) 191, 492, 584, 946
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 6 cut(s) 365, 370, 409, 566, 698, 724
MalI GATC 3 cut(s) 402, 467, 864
MboI GATC 3 cut(s) 400, 465, 862
MboII GAAGA 5 cut(s) 391, 493, 615, 838, 841
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 2 cut(s) 160, 399
MluCI AATT 4 cut(s) 421, 772, 790, 849
MlyI GAGTC 4 cut(s) 452, 574, 637, 721
MmeI TCCRAC 2 cut(s) 633, 648
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 3 cut(s) 147, 588, 818
MspR9I CCNGG 2 cut(s) 542, 818
MvaI CCWGG 1 cut(s) 542
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 3 cut(s) 83, 263, 660
NciI CCSGG 1 cut(s) 818
NcoI CCATGG 1 cut(s) 414
NdeI CATATG 2 cut(s) 308, 659
NdeII GATC 3 cut(s) 400, 465, 862
NheI GCTAGC 1 cut(s) 583
NlaIII CATG 5 cut(s) 347, 379, 418, 706, 895
NlaIV GGNNCC 2 cut(s) 172, 183
NmeAIII GCCGAG 2 cut(s) 603, 654
NmuCI GTSAC 4 cut(s) 370, 566, 698, 724
PaeR7I CTCGAG 1 cut(s) 441
PceI AGGCCT 1 cut(s) 689
PcsI WCGNNNNNNNCGW 2 cut(s) 405, 626
PfeI GAWTC 1 cut(s) 898
PkrI GCNGC 5 cut(s) 189, 435, 497, 721, 842
PleI GAGTC 4 cut(s) 452, 573, 637, 721
PpsI GAGTC 4 cut(s) 452, 573, 637, 721
Psp124BI GAGCTC 2 cut(s) 160, 399
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 2 cut(s) 172, 183
PspPI GGNCC 2 cut(s) 182, 802
PsuI RGATCY 1 cut(s) 862
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 765
RsaNI GTAC 1 cut(s) 764
SacI GAGCTC 2 cut(s) 160, 399
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 5 cut(s) 188, 434, 496, 720, 841
Sau3AI GATC 3 cut(s) 400, 465, 862
Sau96I GGNCC 2 cut(s) 182, 802
SchI GAGTC 4 cut(s) 452, 574, 637, 721
ScrFI CCNGG 2 cut(s) 542, 818
SduI GDGCHC 2 cut(s) 160, 399
SfaNI GCATC 3 cut(s) 64, 396, 420
SfcI CTRYAG 1 cut(s) 678
Sfr274I CTCGAG 1 cut(s) 441
SinI GGWCC 1 cut(s) 182
SlaI CTCGAG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 4 cut(s) 421, 772, 790, 849
SseBI AGGCCT 1 cut(s) 689
SsiI CCGC 5 cut(s) 131, 161, 185, 496, 663
SspMI CTAG 4 cut(s) 191, 492, 584, 946
SstI GAGCTC 2 cut(s) 160, 399
StuI AGGCCT 1 cut(s) 689
StyD4I CCNGG 2 cut(s) 540, 816
StyI CCWWGG 2 cut(s) 414, 690
TaaI ACNGT 3 cut(s) 109, 215, 272
TaiI ACGT 1 cut(s) 372
TaqI TCGA 7 cut(s) 28, 72, 399, 442, 504, 602, 770
TasI AATT 4 cut(s) 421, 772, 790, 849
TatI WGTACW 1 cut(s) 763
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 1 cut(s) 898
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 4 cut(s) 370, 566, 698, 724
TseI GCWGC 4 cut(s) 187, 433, 719, 840
Tsp45I GTSAC 4 cut(s) 370, 566, 698, 724
TspDTI ATGAA 1 cut(s) 392
TspGWI ACGGA 1 cut(s) 774
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 3 cut(s) 772, 790, 849
XhoI CTCGAG 1 cut(s) 441
XspI CTAG 4 cut(s) 191, 492, 584, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.