Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

27304356 .. 27304943

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1192900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAACATGAAGAGAAGCATCGCAGATGTGAGAGAGCTTGATCACGGCCTAACCATGGCCAACTGTTTGATGCTACTGTCCCGTGGCATCAACAACAACGATTATCAATATGACTCCTCCGTCTCCCCTAGCCGGGTTTTCGAGTGCAAGACCTGTAACCGCCAGTTCCCTTCGTTCCAAGCGCTCGGAGGTCATCGAGCCAGCCACAAGAAGCCCAGGTTAACCGGACCATCAGGAGATGGAAACAGCAATAGTTCTGACCAGAGCCTGTCACAGGGGTCACCACCAAAGACCAAGACACACGAGTGCAACATATGTGGCCTAGAGTTTGCTATAGGGCAGGCGTTGGGTGGTCACATGAGGAGGCACAGGGCAGCCTTGAGCAGTAGTAATACTACTAGCAATATTCATGATCGATATTCGAGTTCGATGAGTCTGAATCCTCAGCCTGCGCAAGTATTTCAAGTTTTGAAGAAGACGAATAGCGGTAGGAGAGCTATGTGTTTGGATCTGAACTTGACGCCATTAGAGAATGACTTGGAGATTCTTCAGCTAGGGAAAGCAGCTCCACTTGTTGGGTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

196

Amino Acids

21.35

Weight (kDa)

9.3

Isoelectric Point (pI)

60.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	46 - 72	4.6e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	101 - 125	3.3e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
Acc16I	TGCGCA	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	575
AciI	CCGC	2 cut(s)	160, 486
AclWI	GGATC	1 cut(s)	516
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	521
AfeI	AGCGCT	1 cut(s)	183
AfiI	CCNNNNNNNGG	5 cut(s)	55, 132, 133, 274, 575
AgsI	TTSAA	2 cut(s)	464, 472
AjnI	CCWGG	1 cut(s)	215
AleI	CACNNNNGTG	1 cut(s)	304
AluBI	AGCT	4 cut(s)	37, 497, 553, 566
AluI	AGCT	4 cut(s)	37, 497, 553, 566
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	516
AlwNI	CAGNNNCTG	1 cut(s)	268
Aor51HI	AGCGCT	1 cut(s)	183
AoxI	GGCC	3 cut(s)	46, 57, 319
ApeKI	GCWGC	2 cut(s)	374, 563
AspLEI	GCGC	2 cut(s)	184, 454
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	59
BauI	CACGAG	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	386, 575
BccI	CCATC	2 cut(s)	233, 238
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	217
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	4 cut(s)	129, 323, 399, 554
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	2 cut(s)	375, 564
BlsI	GCNGC	2 cut(s)	376, 565
Bme1390I	CCNGG	2 cut(s)	134, 217
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	134, 217
BmsI	GCATC	3 cut(s)	27, 60, 96
BpiI	GAAGAC	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	415
BsaHI	GRCGYC	1 cut(s)	521
BsaJI	CCNNGG	3 cut(s)	54, 82, 215
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 132, 133, 274, 575
Bse1I	ACTGG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	54, 82, 215
BseLI	CCNNNNNNNGG	5 cut(s)	55, 132, 133, 274, 575
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	2 cut(s)	106, 376
BseXI	GCAGC	2 cut(s)	386, 575
BshFI	GGCC	3 cut(s)	48, 59, 321
BshVI	ATCGAT	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	133, 225
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	5 cut(s)	55, 132, 133, 274, 575
BsmAI	GTCTC	1 cut(s)	127
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	48, 59, 321
Bsp143I	GATC	3 cut(s)	40, 412, 508
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	2 cut(s)	160, 486
BspANI	GGCC	3 cut(s)	48, 59, 321
BspCNI	CTCAG	1 cut(s)	457
BspDI	ATCGAT	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	409
BspPI	GGATC	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	54, 82, 215
BssMI	GATC	3 cut(s)	40, 412, 508
BssNI	GRCGYC	1 cut(s)	521
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	65, 78
Bst6I	CTCTTC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	521
BstC8I	GCNNGC	3 cut(s)	202, 342, 450
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	2 cut(s)	54, 82
BstEII	GGTNACC	1 cut(s)	279
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	184, 454
BstKTI	GATC	3 cut(s)	43, 415, 511
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	3 cut(s)	40, 412, 508
BstNI	CCWGG	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	132, 215
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	386, 575
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
Bsu15I	ATCGAT	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	48, 59, 321
BsuTUI	ATCGAT	1 cut(s)	415
BtgI	CCRYGG	2 cut(s)	54, 82
BtgZI	GCGATG	1 cut(s)	4
Cac8I	GCNNGC	3 cut(s)	202, 342, 450
CaiI	CAGNNNCTG	1 cut(s)	268
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	2 cut(s)	184, 454
Cfr13I	GGNCC	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	415
CseI	GACGC	1 cut(s)	529
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	4 cut(s)	7, 55, 358, 410
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	3 cut(s)	42, 414, 510
DpnII	GATC	3 cut(s)	40, 412, 508
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	227
Eco47III	AGCGCT	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	533
Eco91I	GGTNACC	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	4 cut(s)	10, 58, 361, 413
FaiI	YATR	9 cut(s)	8, 56, 111, 314, 316, 335, 359, 411, 500
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	4 cut(s)	6, 54, 357, 409
FauNDI	CATATG	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	375, 564
Fsp4HI	GCNGC	2 cut(s)	375, 564
FspBI	CTAG	4 cut(s)	129, 323, 399, 554
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	2 cut(s)	183, 453
GluI	GCNGC	2 cut(s)	375, 564
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	48, 59, 321
HapII	CCGG	2 cut(s)	133, 225
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	2 cut(s)	184, 454
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	10, 58, 361, 413
Hin6I	GCGC	2 cut(s)	182, 452
HinP1I	GCGC	2 cut(s)	182, 452
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	4 cut(s)	113, 433, 439, 544
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	2 cut(s)	133, 225
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	4 cut(s)	188, 259, 438, 513
Hpy188III	TCNNGA	2 cut(s)	234, 410
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	2 cut(s)	65, 78
HpyCH4V	TGCA	2 cut(s)	147, 309
HpyF3I	CTNAG	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	4 cut(s)	10, 58, 361, 413
HspAI	GCGC	2 cut(s)	182, 452
Ksp22I	TGATCA	1 cut(s)	40
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	40, 412, 508
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	2 cut(s)	386, 575
LweI	GCATC	3 cut(s)	27, 60, 96
MaeI	CTAG	4 cut(s)	129, 323, 399, 554
MaeIII	GTNAC	4 cut(s)	155, 270, 279, 353
MalI	GATC	3 cut(s)	42, 414, 510
MboI	GATC	3 cut(s)	40, 412, 508
MboII	GAAGA	4 cut(s)	22, 484, 487, 539
MflI	RGATCY	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	107, 442
MnlI	CCTC	5 cut(s)	127, 182, 354, 357, 453
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	1 cut(s)	221
MslI	CAYNNNNRTG	1 cut(s)	304
Msp20I	TGGCCA	1 cut(s)	59
MspI	CCGG	2 cut(s)	133, 225
MspR9I	CCNGG	2 cut(s)	134, 217
MvaI	CCWGG	1 cut(s)	217
NciI	CCSGG	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	3 cut(s)	40, 412, 508
NlaIII	CATG	4 cut(s)	10, 58, 361, 413
NmuCI	GTSAC	3 cut(s)	270, 279, 353
NsbI	TGCGCA	1 cut(s)	453
OliI	CACNNNNGTG	1 cut(s)	304
PagI	TCATGA	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	439, 544
PflMI	CCANNNNNTGG	1 cut(s)	575
PkrI	GCNGC	2 cut(s)	376, 565
PleI	GAGTC	2 cut(s)	107, 441
PpsI	GAGTC	2 cut(s)	107, 441
Psp6I	CCWGG	1 cut(s)	215
PspEI	GGTNACC	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	375, 564
Sau3AI	GATC	3 cut(s)	40, 412, 508
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	2 cut(s)	107, 442
ScrFI	CCNGG	2 cut(s)	134, 217
SetI	ASST	7 cut(s)	39, 155, 193, 221, 499, 555, 568
SfaNI	GCATC	3 cut(s)	27, 60, 96
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
SsiI	CCGC	2 cut(s)	160, 486
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	4 cut(s)	129, 323, 399, 554
StyD4I	CCNGG	2 cut(s)	132, 215
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	65, 78
TaqI	TCGA	5 cut(s)	141, 196, 415, 422, 428
TfiI	GAWTC	2 cut(s)	439, 544
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseFI	GTSAC	3 cut(s)	270, 279, 353
TseI	GCWGC	2 cut(s)	374, 563
Tsp45I	GTSAC	3 cut(s)	270, 279, 353
TspDTI	ATGAA	3 cut(s)	17, 23, 398
TspGWI	ACGGA	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	272
XspI	CTAG	4 cut(s)	129, 323, 399, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.