Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

63009649 .. 63015621

Gene Structure 5973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG452200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAAAAGAGGCAGAGAAGATGAGCAGACCATGGACTTGGTTGGTTGCTTGATGCTGCTATCAAAAGTTGGCCAAAATGATTCGTCCCCAATCAAAAAACAAAAGACCTCTGACCGTGCCTTTGTTTGCAAGACATGTAATCGCGAGTTCTCATCGTTCCAAGCCCTCGGAGGCCACAGAGCGAGCCATAACAAGCCGAAAAAAATGGCCGGTGCAGCCACAGACCTTTTACAGCTTGCTCAGTTGGCGCCTATTTCACCGGCAAAGCCCAAGACCCACGAGTGCCCTGTCTGTGGGCTTGAATTCGCAATCGGGCAAGCGCTTGGAGGACACATGAGGAGACATAGGGACGTTATGAATTCTGCTTCTGCCGATCGAGTTCGGGCAGCAGCCGTGCCGGTGTTGAAGAAATCCAATAGTAGCAAAAGGGTGTCGTGCTTGAATCTGGATTTGAATTTGGCACCACCCGGATATCAACATCACCAGGTCCAGAGATTATTAGTTTCATCTAGAGTTCTAGACTATCGGAACGTTCAAAGCACTCTCACTGGGTTGGGCTGCCTAAAACGACCGCTTGACGAAGTTACCACCCTCCAACGCGGTGACGCAAACTTGGCCCACATTGACGGAGTTAACAAATTAAACTACACAATCCTCCTAAATAAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

223

Amino Acids

24.52

Weight (kDa)

9.81

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	40 - 65	1.6e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	93 - 117	1.6e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	247, 460
AccII	CGCG	2 cut(s)	144, 600
AciI	CCGC	2 cut(s)	572, 600
AclI	AACGTT	1 cut(s)	531
AcoI	YGGCCR	2 cut(s)	70, 207
AcsI	RAATTY	3 cut(s)	302, 358, 454
AcyI	GRCGYC	1 cut(s)	248
AfeI	AGCGCT	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	5 cut(s)	302, 406, 442, 454, 536
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	334
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	4 cut(s)	70, 172, 207, 615
ApeKI	GCWGC	5 cut(s)	55, 215, 386, 389, 558
ApoI	RAATTY	3 cut(s)	302, 358, 454
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	2 cut(s)	250, 322
AspS9I	GGNCC	2 cut(s)	487, 616
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	3 cut(s)	249, 473, 614
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	2 cut(s)	247, 460
BauI	CACGAG	1 cut(s)	278
BbvI	GCAGC	5 cut(s)	42, 227, 398, 401, 545
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	485
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	2 cut(s)	510, 518
BfoI	RGCGCY	2 cut(s)	251, 323
BisI	GCNGC	5 cut(s)	56, 216, 387, 390, 559
BlsI	GCNGC	5 cut(s)	57, 217, 388, 391, 560
Bme1390I	CCNGG	2 cut(s)	468, 485
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	487, 616
BmiI	GGNNCC	2 cut(s)	249, 462
BmrFI	CCNGG	2 cut(s)	468, 485
BmrI	ACTGGG	1 cut(s)	558
BmsI	GCATC	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	30, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	3 cut(s)	209, 259, 397
Bse1I	ACTGG	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	30, 166
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	5 cut(s)	42, 227, 398, 401, 545
BsgI	GTGCAG	1 cut(s)	234
Bsh1236I	CGCG	2 cut(s)	144, 600
Bsh1285I	CGRYCG	2 cut(s)	376, 572
BshFI	GGCC	4 cut(s)	72, 174, 209, 617
BshNI	GGYRCC	2 cut(s)	247, 460
BsiEI	CGRYCG	2 cut(s)	376, 572
BsiSI	CCGG	4 cut(s)	210, 260, 398, 468
BslFI	GGGAC	2 cut(s)	70, 362
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	70, 362
BsnI	GGCC	4 cut(s)	72, 174, 209, 617
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	30
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	2 cut(s)	572, 600
BspANI	GGCC	4 cut(s)	72, 174, 209, 617
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	2 cut(s)	144, 600
BspLI	GGNNCC	2 cut(s)	249, 462
BspT107I	GGYRCC	2 cut(s)	247, 460
BsrFI	RCCGGY	3 cut(s)	209, 259, 397
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	3 cut(s)	209, 259, 397
BssECI	CCNNGG	2 cut(s)	30, 166
BssMI	GATC	1 cut(s)	373
BssNI	GRCGYC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	184, 237, 318
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	30
BstFNI	CGCG	2 cut(s)	144, 600
BstH2I	RGCGCY	2 cut(s)	251, 323
BstHHI	GCGC	2 cut(s)	250, 322
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	373
BstMCI	CGRYCG	2 cut(s)	376, 572
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 245, 614
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	466, 483
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	2 cut(s)	144, 600
BstV1I	GCAGC	5 cut(s)	42, 227, 398, 401, 545
BstXI	CCANNNNNNTGG	1 cut(s)	37
BsuRI	GGCC	4 cut(s)	72, 174, 209, 617
BtgI	CCRYGG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	546
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	184, 237, 318
CfoI	GCGC	2 cut(s)	250, 322
Cfr10I	RCCGGY	3 cut(s)	209, 259, 397
Cfr13I	GGNCC	2 cut(s)	487, 616
CseI	GACGC	1 cut(s)	614
CsiI	ACCWGGT	1 cut(s)	483
CviAII	CATG	3 cut(s)	31, 135, 334
DdeI	CTNAG	1 cut(s)	240
DinI	GGCGCC	1 cut(s)	249
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	70, 207
Eco130I	CCWWGG	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	487
Eco47III	AGCGCT	1 cut(s)	321
EcoRI	GAATTC	2 cut(s)	302, 358
EcoRII	CCWGG	1 cut(s)	483
EcoRV	GATATC	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	34, 138, 337
FaiI	YATR	6 cut(s)	32, 136, 189, 335, 345, 356
FaqI	GGGAC	2 cut(s)	70, 362
FatI	CATG	3 cut(s)	30, 134, 333
Fnu4HI	GCNGC	5 cut(s)	56, 216, 387, 390, 559
Fsp4HI	GCNGC	5 cut(s)	56, 216, 387, 390, 559
FspBI	CTAG	2 cut(s)	510, 518
GlaI	GCGC	2 cut(s)	249, 321
GluI	GCNGC	5 cut(s)	56, 216, 387, 390, 559
HaeII	RGCGCY	2 cut(s)	251, 323
HaeIII	GGCC	4 cut(s)	72, 174, 209, 617
HapII	CCGG	4 cut(s)	210, 260, 398, 468
HgaI	GACGC	1 cut(s)	614
HhaI	GCGC	2 cut(s)	250, 322
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	34, 138, 337
Hin6I	GCGC	2 cut(s)	248, 320
HinP1I	GCGC	2 cut(s)	248, 320
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	2 cut(s)	80, 442
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	4 cut(s)	210, 260, 398, 468
HphI	GGTGA	3 cut(s)	249, 473, 614
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	3 cut(s)	112, 170, 528
Hpy188III	TCNNGA	5 cut(s)	143, 446, 490, 510, 518
Hpy8I	GTNNAC	1 cut(s)	634
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	2 cut(s)	351, 531
HpyCH4V	TGCA	2 cut(s)	129, 215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 245, 614
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	2 cut(s)	351, 531
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	34, 138, 337
HspAI	GCGC	2 cut(s)	248, 320
KasI	GGCGCC	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	373
Lsp1109I	GCAGC	5 cut(s)	42, 227, 398, 401, 545
LweI	GCATC	1 cut(s)	42
MabI	ACCWGGT	1 cut(s)	483
MaeI	CTAG	2 cut(s)	510, 518
MaeII	ACGT	2 cut(s)	351, 531
MaeIII	GTNAC	2 cut(s)	583, 602
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	2 cut(s)	29, 418
MhlI	GDGCHC	1 cut(s)	287
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	4 cut(s)	302, 358, 454, 638
MluNI	TGGCCA	1 cut(s)	72
Mly113I	GGCGCC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	7 cut(s)	118, 164, 176, 320, 330, 602, 665
Mox20I	TGGCCA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	2 cut(s)	633, 641
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	4 cut(s)	210, 260, 398, 468
MspR9I	CCNGG	2 cut(s)	468, 485
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	2 cut(s)	144, 600
MwoI	GCNNNNNNNGC	3 cut(s)	215, 245, 614
NarI	GGCGCC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	468
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	34, 138, 337
NlaIV	GGNNCC	2 cut(s)	249, 462
NmuCI	GTSAC	1 cut(s)	602
NruI	TCGCGA	1 cut(s)	144
NspI	RCATGY	1 cut(s)	138
PciI	ACATGT	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	80, 442
PkrI	GCNGC	5 cut(s)	57, 217, 388, 391, 560
Ple19I	CGATCG	1 cut(s)	376
PluTI	GGCGCC	1 cut(s)	251
PscI	ACATGT	1 cut(s)	134
Psp1406I	AACGTT	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	249, 462
PspPI	GGNCC	2 cut(s)	487, 616
PvuI	CGATCG	1 cut(s)	376
RruI	TCGCGA	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	633, 641
SatI	GCNGC	5 cut(s)	56, 216, 387, 390, 559
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	487, 616
ScrFI	CCNGG	2 cut(s)	468, 485
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	6 cut(s)	110, 228, 237, 354, 489, 534
SexAI	ACCWGGT	1 cut(s)	483
SfaNI	GCATC	1 cut(s)	42
SfoI	GGCGCC	1 cut(s)	249
SinI	GGWCC	1 cut(s)	487
Sse9I	AATT	4 cut(s)	302, 358, 454, 638
SsiI	CCGC	2 cut(s)	572, 600
SspDI	GGCGCC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	510, 518
StyD4I	CCNGG	2 cut(s)	466, 483
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	2 cut(s)	354, 534
TaqI	TCGA	1 cut(s)	376
TasI	AATT	4 cut(s)	302, 358, 454, 638
TfiI	GAWTC	2 cut(s)	80, 442
Tru1I	TTAA	2 cut(s)	633, 641
Tru9I	TTAA	2 cut(s)	633, 641
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	5 cut(s)	55, 215, 386, 389, 558
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	3 cut(s)	17, 371, 495
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	3 cut(s)	302, 358, 454
XbaI	TCTAGA	2 cut(s)	509, 517
XceI	RCATGY	1 cut(s)	138
XspI	CTAG	2 cut(s)	510, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.