Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

71468951 .. 71469943

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG414000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAAGAGAGGCAGAGAAGATGATCAGACCCTGGATTTGGTTAGTTGCTTGATGCTGTTATCCAAAGTCGGCCAAAATGATTCATCCCCAATTAAAAAACAGAAGACCTTGGATCGTGCCTTTGTTTGCAAGACGTGTAACCGCGAGTTCTCCTCGTTCCAAGCCCTCGGAGGTCACAGAGCGAGTCACAACAAACCAAAACTAATGGGCCGAAATGGTGCCTCCGACCTCTTACAGTCATCACCGAGCTCCCCGGCCAAGCCCAAGACCCACGAGTGTCCCATCTGCGGGCTTGAATTCGCGATCGGGCAAGCGCTTGGGGGTCACATGAGGAGACACAGGGATGTCATGACTTCCGCTGCTGCGGATCGGGTTCGGAAGGCAGCGGTGCCGGTGCCGGTGTTGAAAAAATCAATTAGTAGTAAATGGGTGTCATGCTTGGATCTGGATTTGAATTTGGCACCACCGGGATATCAACGTCATTACGATTTGACGAAGCTGCAGTTGATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

171

Amino Acids

18.81

Weight (kDa)

9.72

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	40 - 65	1.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	91 - 115	1.9e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	218, 388, 394, 460
AccII	CGCG	2 cut(s)	144, 302
AciI	CCGC	5 cut(s)	142, 288, 357, 365, 386
AclWI	GGATC	3 cut(s)	120, 375, 450
AcoI	YGGCCR	2 cut(s)	70, 255
AcsI	RAATTY	2 cut(s)	296, 454
AfeI	AGCGCT	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	37, 287, 288
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	296, 406, 454
AjiI	CACGTC	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	249, 499
AluI	AGCT	2 cut(s)	249, 499
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	3 cut(s)	120, 375, 450
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	315
AoxI	GGCC	3 cut(s)	70, 208, 255
ApeKI	GCWGC	4 cut(s)	359, 362, 383, 499
ApoI	RAATTY	2 cut(s)	296, 454
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	2 cut(s)	254, 468
AsuHPI	GGTGA	1 cut(s)	234
BanI	GGYRCC	4 cut(s)	218, 388, 394, 460
BanII	GRGCYC	1 cut(s)	251
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	4 cut(s)	346, 349, 395, 486
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	2 cut(s)	254, 468
BcoDI	GTCTC	1 cut(s)	328
BfmI	CTRYAG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	317
BisI	GCNGC	4 cut(s)	360, 363, 384, 500
BlsI	GCNGC	4 cut(s)	361, 364, 385, 501
Bme1390I	CCNGG	3 cut(s)	32, 254, 468
BmgBI	CACGTC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	4 cut(s)	220, 390, 396, 462
BmrFI	CCNGG	3 cut(s)	32, 254, 468
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpuMI	CCSGG	2 cut(s)	254, 468
BsaJI	CCNNGG	4 cut(s)	30, 108, 166, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 287, 288
Bse118I	RCCGGY	2 cut(s)	391, 397
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	4 cut(s)	30, 108, 166, 252
BseGI	GGATG	2 cut(s)	83, 349
BseLI	CCNNNNNNNGG	3 cut(s)	37, 287, 288
BseRI	GAGGAG	2 cut(s)	142, 346
BseXI	GCAGC	4 cut(s)	346, 349, 395, 486
Bsh1236I	CGCG	2 cut(s)	144, 302
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	72, 210, 257
BshNI	GGYRCC	4 cut(s)	218, 388, 394, 460
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	4 cut(s)	254, 392, 398, 467
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	3 cut(s)	37, 287, 288
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	3 cut(s)	72, 210, 257
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	22, 112, 303, 367, 442
Bsp68I	TCGCGA	1 cut(s)	302
BspACI	CCGC	5 cut(s)	142, 288, 357, 365, 386
BspANI	GGCC	3 cut(s)	72, 210, 257
BspFNI	CGCG	2 cut(s)	144, 302
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	4 cut(s)	220, 390, 396, 462
BspMAI	CTGCAG	1 cut(s)	504
BspPI	GGATC	3 cut(s)	120, 375, 450
BspT107I	GGYRCC	4 cut(s)	218, 388, 394, 460
BsrFI	RCCGGY	2 cut(s)	391, 397
BssAI	RCCGGY	2 cut(s)	391, 397
BssECI	CCNNGG	4 cut(s)	30, 108, 166, 252
BssMI	GATC	5 cut(s)	22, 112, 303, 367, 442
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	290, 312
BstF5I	GGATG	2 cut(s)	83, 349
BstFNI	CGCG	2 cut(s)	144, 302
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	5 cut(s)	25, 115, 306, 370, 445
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	5 cut(s)	22, 112, 303, 367, 442
BstMCI	CGRYCG	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	3 cut(s)	30, 252, 466
BstSFI	CTRYAG	1 cut(s)	500
BstUI	CGCG	2 cut(s)	144, 302
BstV1I	GCAGC	4 cut(s)	346, 349, 395, 486
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	72, 210, 257
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	83, 349
BtuMI	TCGCGA	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	290, 312
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	2 cut(s)	391, 397
Cfr13I	GGNCC	1 cut(s)	208
CviAII	CATG	3 cut(s)	328, 349, 435
CviJI	RGCY	8 cut(s)	72, 164, 210, 249, 257, 262, 292, 499
CviKI_1	RGCY	8 cut(s)	72, 164, 210, 249, 257, 262, 292, 499
DpnI	GATC	5 cut(s)	24, 114, 305, 369, 444
DpnII	GATC	5 cut(s)	22, 112, 303, 367, 442
EaeI	YGGCCR	2 cut(s)	70, 255
Ecl136II	GAGCTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	473
Eco47III	AGCGCT	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	331, 352, 438
FaiI	YATR	3 cut(s)	329, 350, 436
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	3 cut(s)	327, 348, 434
FauI	CCCGC	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	360, 363, 384, 500
FokI	GGATG	2 cut(s)	70, 356
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	360, 363, 384, 500
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	4 cut(s)	360, 363, 384, 500
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	72, 210, 257
HapII	CCGG	4 cut(s)	254, 392, 398, 467
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	331, 352, 438
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	2 cut(s)	80, 184
HpaII	CCGG	4 cut(s)	254, 392, 398, 467
HphI	GGTGA	1 cut(s)	234
Hpy188I	TCNGA	4 cut(s)	27, 170, 226, 378
Hpy188III	TCNNGA	4 cut(s)	301, 349, 446, 513
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	2 cut(s)	134, 478
HpyCH4V	TGCA	2 cut(s)	129, 502
HpySE526I	ACGT	2 cut(s)	134, 478
Hsp92II	CATG	3 cut(s)	331, 352, 438
HspAI	GCGC	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	22, 112, 303, 367, 442
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	8 cut(s)	17, 44, 267, 325, 405, 411, 431, 480
Lsp1109I	GCAGC	4 cut(s)	346, 349, 395, 486
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	2 cut(s)	134, 478
MaeIII	GTNAC	4 cut(s)	137, 173, 185, 323
MalI	GATC	5 cut(s)	24, 114, 305, 369, 444
MboI	GATC	5 cut(s)	22, 112, 303, 367, 442
MboII	GAAGA	3 cut(s)	16, 29, 115
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	4 cut(s)	90, 296, 414, 454
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	6 cut(s)	163, 164, 176, 232, 239, 324
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	2 cut(s)	359, 386
MspI	CCGG	4 cut(s)	254, 392, 398, 467
MspR9I	CCNGG	3 cut(s)	32, 254, 468
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	2 cut(s)	144, 302
NciI	CCSGG	2 cut(s)	254, 468
NdeII	GATC	5 cut(s)	22, 112, 303, 367, 442
NlaIII	CATG	3 cut(s)	331, 352, 438
NlaIV	GGNNCC	4 cut(s)	220, 390, 396, 462
NmuCI	GTSAC	3 cut(s)	173, 185, 323
NruI	TCGCGA	1 cut(s)	302
PagI	TCATGA	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	361, 364, 385, 501
Ple19I	CGATCG	1 cut(s)	306
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	4 cut(s)	220, 390, 396, 462
PspPI	GGNCC	1 cut(s)	208
PstI	CTGCAG	1 cut(s)	504
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	442
PvuI	CGATCG	1 cut(s)	306
RruI	TCGCGA	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	4 cut(s)	360, 363, 384, 500
Sau3AI	GATC	5 cut(s)	22, 112, 303, 367, 442
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	32, 254, 468
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	7 cut(s)	110, 137, 175, 231, 251, 481, 501
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	4 cut(s)	90, 296, 414, 454
SsiI	CCGC	5 cut(s)	142, 288, 357, 365, 386
SstI	GAGCTC	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	30, 252, 466
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	2 cut(s)	137, 481
TasI	AATT	4 cut(s)	90, 296, 414, 454
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	3 cut(s)	173, 185, 323
TseI	GCWGC	4 cut(s)	359, 362, 383, 499
Tsp45I	GTSAC	3 cut(s)	173, 185, 323
TspDTI	ATGAA	2 cut(s)	17, 72
XapI	RAATTY	2 cut(s)	296, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.