Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

30232431 .. 30233232

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAGAGAGGCAGAGAAGATGATCAGCAGACCCTGGACTTGGTTAGTTGCTTGATGCTGCTATCCAAAGACGTCGGTCAAACTGGTTCATCCCCAATCAAAAAACAGAAGACGTCAGATCGTGCCTTTGCTTGCAAGACGTGTAACCGCGAGTTCTCCTCGTTCCAAGCCCTCGGAGGTCACAGAGCGAGTCACAATAAACCTAAACTAGTTGCCGGAAATGGTGCCGCCGACCTCTTGCAGCTAGCACAGTCATCTCCGAGCTCGCCGGCCAAGCCCAAGTCCCACGAGTGCCCCATCTGCGGGGTTGAATTCGCAATCGGTCAAGCGCTTGGGGGTCACATGAGGAGACACAGGGACGTCATGATTTCTGCTGCTGCTGATCGGGGTCAGGCGGCAGCCGTGCCGGTGTTGAAGAAATCGAATAGTAGCAAAAGGGTGTCGTGCTTGAATCTGGACTTGAATTTGGCACCACCGGGCTATCAACGTCATTATGATTTGACAAAGTTGCAGTTGATTTCTGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

177

Amino Acids

18.91

Weight (kDa)

9.66

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	42 - 67	3e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	96 - 120	8.5e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	75, 116, 363
AccB1I	GGYRCC	2 cut(s)	224, 469
AccII	CGCG	1 cut(s)	150
AciI	CCGC	4 cut(s)	148, 228, 303, 395
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	311, 463
AcyI	GRCGYC	3 cut(s)	72, 113, 360
AfeI	AGCGCT	1 cut(s)	330
AfiI	CCNNNNNNNGG	3 cut(s)	40, 302, 303
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	311, 415, 451, 463
AhlI	ACTAGT	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	244, 264
AluI	AGCT	2 cut(s)	244, 264
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	34
Aor51HI	AGCGCT	1 cut(s)	330
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	5 cut(s)	58, 241, 374, 377, 398
ApoI	RAATTY	2 cut(s)	311, 463
AspLEI	GCGC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	477
AsuNHI	GCTAGC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	224, 469
BanII	GRGCYC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	5 cut(s)	45, 253, 361, 364, 410
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	386
BciT130I	CCWGG	1 cut(s)	35
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	343
BcuI	ACTAGT	1 cut(s)	208
BfaI	CTAG	2 cut(s)	209, 245
BfoI	RGCGCY	1 cut(s)	332
BisI	GCNGC	7 cut(s)	59, 228, 242, 375, 378, 396, 399
BlsI	GCNGC	7 cut(s)	60, 229, 243, 376, 379, 397, 400
Bme1390I	CCNGG	2 cut(s)	35, 477
BmgBI	CACGTC	1 cut(s)	141
BmiI	GGNNCC	2 cut(s)	226, 471
BmrFI	CCNGG	2 cut(s)	35, 477
BmsI	GCATC	1 cut(s)	45
BmtI	GCTAGC	1 cut(s)	248
BoxI	GACNNNNGTC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuMI	CCSGG	1 cut(s)	477
BsaHI	GRCGYC	3 cut(s)	72, 113, 360
BsaJI	CCNNGG	2 cut(s)	33, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 302, 303
Bse118I	RCCGGY	2 cut(s)	268, 406
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	33, 172
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	3 cut(s)	40, 302, 303
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	2 cut(s)	148, 361
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	5 cut(s)	45, 253, 361, 364, 410
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	2 cut(s)	224, 469
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	4 cut(s)	216, 269, 407, 476
BslFI	GGGAC	2 cut(s)	268, 371
BslI	CCNNNNNNNGG	3 cut(s)	40, 302, 303
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	2 cut(s)	268, 371
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	266, 296
Bsp143I	GATC	3 cut(s)	22, 118, 382
BspACI	CCGC	4 cut(s)	148, 228, 303, 395
BspANI	GGCC	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	226, 471
BspOI	GCTAGC	1 cut(s)	248
BspT107I	GGYRCC	2 cut(s)	224, 469
BsrFI	RCCGGY	2 cut(s)	268, 406
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	2 cut(s)	268, 406
BssECI	CCNNGG	2 cut(s)	33, 172
BssMI	GATC	3 cut(s)	22, 118, 382
BssNI	GRCGYC	3 cut(s)	72, 113, 360
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	252
BstACI	GRCGYC	3 cut(s)	72, 113, 360
BstC8I	GCNNGC	4 cut(s)	133, 246, 266, 270
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	25, 121, 385
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	3 cut(s)	22, 118, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 300
BstNI	CCWGG	1 cut(s)	35
BstPAI	GACNNNNGTC	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	33, 475
BstSLI	GKGCMC	1 cut(s)	296
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	5 cut(s)	45, 253, 361, 364, 410
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	4 cut(s)	133, 246, 266, 270
CaiI	CAGNNNCTG	1 cut(s)	34
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	2 cut(s)	268, 406
CviAII	CATG	2 cut(s)	343, 364
CviJI	RGCY	7 cut(s)	170, 244, 264, 272, 277, 401, 480
CviKI_1	RGCY	7 cut(s)	170, 244, 264, 272, 277, 401, 480
DpnI	GATC	3 cut(s)	24, 120, 384
DpnII	GATC	3 cut(s)	22, 118, 382
EaeI	YGGCCR	1 cut(s)	270
Ecl136II	GAGCTC	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	266
Eco47III	AGCGCT	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	2 cut(s)	346, 367
FaiI	YATR	3 cut(s)	344, 365, 495
FaqI	GGGAC	2 cut(s)	268, 371
FatI	CATG	2 cut(s)	342, 363
FauI	CCCGC	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	7 cut(s)	59, 228, 242, 375, 378, 396, 399
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	7 cut(s)	59, 228, 242, 375, 378, 396, 399
FspBI	CTAG	2 cut(s)	209, 245
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	7 cut(s)	59, 228, 242, 375, 378, 396, 399
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	4 cut(s)	216, 269, 407, 476
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	3 cut(s)	72, 113, 360
Hin1II	CATG	2 cut(s)	346, 367
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	2 cut(s)	190, 451
HpaII	CCGG	4 cut(s)	216, 269, 407, 476
Hpy188I	TCNGA	3 cut(s)	118, 176, 261
Hpy188III	TCNNGA	3 cut(s)	364, 455, 522
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	5 cut(s)	72, 113, 140, 360, 487
HpyCH4V	TGCA	3 cut(s)	135, 241, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 300
HpySE526I	ACGT	5 cut(s)	72, 113, 140, 360, 487
Hsp92I	GRCGYC	3 cut(s)	72, 113, 360
Hsp92II	CATG	2 cut(s)	346, 367
HspAI	GCGC	1 cut(s)	329
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	22, 118, 382
Lsp1109I	GCAGC	5 cut(s)	45, 253, 361, 364, 410
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	2 cut(s)	209, 245
MaeII	ACGT	5 cut(s)	72, 113, 140, 360, 487
MaeIII	GTNAC	4 cut(s)	143, 179, 191, 338
MalI	GATC	3 cut(s)	24, 120, 384
MboI	GATC	3 cut(s)	22, 118, 382
MboII	GAAGA	4 cut(s)	16, 29, 121, 427
MhlI	GDGCHC	2 cut(s)	266, 296
MluCI	AATT	2 cut(s)	311, 463
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	169, 170, 182, 245, 339
MroNI	GCCGGC	1 cut(s)	268
MspI	CCGG	4 cut(s)	216, 269, 407, 476
MspR9I	CCNGG	2 cut(s)	35, 477
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	274, 300
NaeI	GCCGGC	1 cut(s)	270
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	3 cut(s)	22, 118, 382
NgoMIV	GCCGGC	1 cut(s)	268
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	346, 367
NlaIV	GGNNCC	2 cut(s)	226, 471
NmuCI	GTSAC	3 cut(s)	179, 191, 338
PagI	TCATGA	1 cut(s)	363
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	451
PkrI	GCNGC	7 cut(s)	60, 229, 243, 376, 379, 397, 400
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PshAI	GACNNNNGTC	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	226, 471
PstNI	CAGNNNCTG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	266
SatI	GCNGC	7 cut(s)	59, 228, 242, 375, 378, 396, 399
Sau3AI	GATC	3 cut(s)	22, 118, 382
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	35, 477
SduI	GDGCHC	2 cut(s)	266, 296
SfaNI	GCATC	1 cut(s)	45
SpeI	ACTAGT	1 cut(s)	208
Sse9I	AATT	2 cut(s)	311, 463
SsiI	CCGC	4 cut(s)	148, 228, 303, 395
SspMI	CTAG	2 cut(s)	209, 245
SstI	GAGCTC	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	33, 475
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	5 cut(s)	75, 116, 143, 363, 490
TaqI	TCGA	1 cut(s)	422
TaqII	GACCGA	2 cut(s)	65, 311
TasI	AATT	2 cut(s)	311, 463
TauI	GCSGC	2 cut(s)	230, 398
TfiI	GAWTC	1 cut(s)	451
TseFI	GTSAC	3 cut(s)	179, 191, 338
TseI	GCWGC	5 cut(s)	58, 241, 374, 377, 398
Tsp45I	GTSAC	3 cut(s)	179, 191, 338
TspDTI	ATGAA	2 cut(s)	17, 78
XapI	RAATTY	2 cut(s)	311, 463
XspI	CTAG	2 cut(s)	209, 245
ZraI	GACGTC	3 cut(s)	73, 114, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.