Rorug05G0353100

Zinc finger protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
44097904 .. 44098338
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0353100.1

Sequence Viewer

Length: 435 bp
ATGCCTCTTAAAAGAAAGAAAGACGCAGAGTTGATTAAATCTTTAAGGAGAAGTCTTGATAGGTTCATTACTAGAGAATTAGAAGGCTTAGGTGAACATTTAGTAAATGAAGAACACACTGATAGAGAGGAATTGGTTGATGATACTGGAGAGAATAGGAATGACAATGAGGGTGTTGATAATGTACATCATGATGAAAATGATAATGATGCTGGACATAATAATAATGGGAATAATGCAGATGCCAGTTATTTTGCTGACAAACTAGCAAGTGATGCGACTTCCATGAACACTTTTTATCCAAGAAATTGGGATAGCTTAGATAAAAAGTTGATAAATCACTTGGTAGTAAAGAATTCTATTAGAGATTTTTCAATAGAAAATGGTTCTCTAGAAAAGTTCAATAGACATTCCAGATCAAAATCTTACATTTGA

Protein Analysis

144

Amino Acids

16.61

Weight (kDa)

5.33

Isoelectric Point (pI)

28.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 355
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 2 cut(s) 375, 403
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
ApoI RAATTY 1 cut(s) 355
AsuHPI GGTGA 1 cut(s) 104
BfaI CTAG 3 cut(s) 72, 266, 392
BmsI GCATC 3 cut(s) 199, 232, 265
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 151, 246
Bse8I GATNNNNATC 1 cut(s) 421
BseJI GATNNNNATC 1 cut(s) 421
BseNI ACTGG 2 cut(s) 151, 246
Bsp1407I TGTACA 1 cut(s) 184
Bsp143I GATC 1 cut(s) 416
BspHI TCATGA 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 184
BsrI ACTGG 2 cut(s) 151, 246
BssMI GATC 1 cut(s) 416
BstAPI GCANNNNNTGC 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 88, 319
BstKTI GATC 1 cut(s) 419
BstMBI GATC 1 cut(s) 416
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstXI CCANNNNNNTGG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 117
CciI TCATGA 1 cut(s) 190
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 191, 286
CviJI RGCY 2 cut(s) 87, 318
CviKI_1 RGCY 2 cut(s) 87, 318
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 88, 319
DpnI GATC 1 cut(s) 418
DpnII GATC 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 355
FaeI CATG 2 cut(s) 194, 289
FaiI YATR 3 cut(s) 192, 219, 287
FatI CATG 2 cut(s) 190, 285
FspBI CTAG 3 cut(s) 72, 266, 392
GsuI CTGGAG 1 cut(s) 168
HgaI GACGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 194, 289
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 95
Hpy188III TCNNGA 4 cut(s) 56, 191, 392, 414
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 88, 319
Hsp92II CATG 2 cut(s) 194, 289
Kzo9I GATC 1 cut(s) 416
LpnPI CCDG 4 cut(s) 132, 198, 259, 427
LweI GCATC 3 cut(s) 199, 232, 265
MaeI CTAG 3 cut(s) 72, 266, 392
MalI GATC 1 cut(s) 418
MboI GATC 1 cut(s) 416
MboII GAAGA 1 cut(s) 122
MluCI AATT 4 cut(s) 77, 131, 307, 355
MnlI CCTC 3 cut(s) 15, 121, 163
MseI TTAA 3 cut(s) 9, 36, 44
MslI CAYNNNNRTG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 1 cut(s) 416
NlaIII CATG 2 cut(s) 194, 289
PagI TCATGA 1 cut(s) 190
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 3 cut(s) 9, 36, 44
Sau3AI GATC 1 cut(s) 416
SetI ASST 3 cut(s) 65, 94, 320
SfaNI GCATC 3 cut(s) 199, 232, 265
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 4 cut(s) 77, 131, 307, 355
SspMI CTAG 3 cut(s) 72, 266, 392
TasI AATT 4 cut(s) 77, 131, 307, 355
TatI WGTACW 1 cut(s) 184
Tru1I TTAA 3 cut(s) 9, 36, 44
Tru9I TTAA 3 cut(s) 9, 36, 44
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 55, 123, 210, 302
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 355
XbaI TCTAGA 1 cut(s) 391
XspI CTAG 3 cut(s) 72, 266, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.