Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

8493255 .. 8493776

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1099300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAGAGAAGCAGGCAAGACGAGACCTTAGACATGGTCAATTGTCTAATGCTTTTATCCAAGGTAGGGGAACCCGATTCCTCCCCCATCAAATACGAAAACTCGAAAAATGACCGAGTTTTCGTGTGCAAGACGTGTGATCGGGAGTTCCCGTCGTTCCAAGCCCTCGGAGGCCACAGGGCGAGTCACAAGAAGCCGAAGCTAATGCCCGGTGGGGCTGTTGACCTTTTACATTTGGCGGAGTTCCCGGGGTCGCCGGTGAAGCCCAAGAAGCATGAGTGCCCGATCTGCGGGCTTGAGTTCACGGTCGGACAGGCGCTTGGGGGACACATGAGGAGACATAGGGACGTCATCCAAGCTGCGGCTGTTCGAGCTCAGCCGTCGCCGCCGATGCCTGTTTTGAAGAAGTCAAATAGTAGCAAAAGGGTGTCGTGTTTGAATATGGAGTTGAATTTGGATCTGCATTTGGCACCACCGGGTCATCACCAATACGATTTGACGAAGCTGCAGATGATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

174

Amino Acids

19.23

Weight (kDa)

9.32

Isoelectric Point (pI)

58.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	40 - 66	3.6e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	92 - 116	2.2e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	469
AciI	CCGC	4 cut(s)	239, 291, 362, 386
AclWI	GGATC	1 cut(s)	465
AcsI	RAATTY	1 cut(s)	451
AcyI	GRCGYC	1 cut(s)	348
AfiI	CCNNNNNNNGG	3 cut(s)	66, 290, 361
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	403, 439, 451
AjiI	CACGTC	1 cut(s)	135
AluBI	AGCT	4 cut(s)	202, 359, 374, 505
AluI	AGCT	4 cut(s)	202, 359, 374, 505
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	17, 331
AlwI	GGATC	1 cut(s)	465
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	359, 505
ApoI	RAATTY	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	1 cut(s)	319
AsuC2I	CCSGG	4 cut(s)	210, 248, 249, 477
AsuHPI	GGTGA	2 cut(s)	271, 476
AvaI	CYCGRG	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	346, 492
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BcnI	CCSGG	4 cut(s)	210, 248, 249, 477
BcoDI	GTCTC	2 cut(s)	17, 331
BfmI	CTRYAG	1 cut(s)	506
BfoI	RGCGCY	1 cut(s)	320
BisI	GCNGC	4 cut(s)	360, 363, 386, 506
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	4 cut(s)	361, 364, 387, 507
Bme1390I	CCNGG	4 cut(s)	210, 248, 249, 477
BmeT110I	CYCGRG	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	72, 471
BmrFI	CCNGG	4 cut(s)	210, 248, 249, 477
BmsI	GCATC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	4 cut(s)	210, 248, 249, 477
BsaHI	GRCGYC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	4 cut(s)	60, 166, 247, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 290, 361
Bse118I	RCCGGY	1 cut(s)	256
BseDI	CCNNGG	4 cut(s)	60, 166, 247, 248
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	3 cut(s)	66, 290, 361
BseMII	CTCAG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	346, 492
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	4 cut(s)	210, 248, 257, 476
BslFI	GGGAC	2 cut(s)	339, 359
BslI	CCNNNNNNNGG	3 cut(s)	66, 290, 361
BsmAI	GTCTC	2 cut(s)	17, 331
BsmFI	GGGAC	2 cut(s)	339, 359
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	284, 376
Bsp143I	GATC	3 cut(s)	139, 285, 457
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	4 cut(s)	239, 291, 362, 386
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	72, 471
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	4 cut(s)	60, 166, 247, 248
BssMI	GATC	3 cut(s)	139, 285, 457
BssNI	GRCGYC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	14, 293
BstDEI	CTNAG	2 cut(s)	28, 375
BstF5I	GGATG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	3 cut(s)	142, 288, 460
BstMAI	GTCTC	2 cut(s)	17, 331
BstMBI	GATC	3 cut(s)	139, 285, 457
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	6 cut(s)	262, 271, 288, 371, 385, 391
BstSCI	CCNGG	4 cut(s)	208, 246, 247, 475
BstSFI	CTRYAG	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	346, 492
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	174
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	14, 293
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	256
Cfr9I	CCCGGG	1 cut(s)	247
CviAII	CATG	3 cut(s)	34, 275, 331
DdeI	CTNAG	2 cut(s)	28, 375
DpnI	GATC	3 cut(s)	141, 287, 459
DpnII	GATC	3 cut(s)	139, 285, 457
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	3 cut(s)	37, 278, 334
FaiI	YATR	5 cut(s)	35, 276, 332, 342, 443
FaqI	GGGAC	2 cut(s)	339, 359
FatI	CATG	3 cut(s)	33, 274, 330
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	4 cut(s)	360, 363, 386, 506
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	4 cut(s)	360, 363, 386, 506
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	4 cut(s)	360, 363, 386, 506
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	4 cut(s)	210, 248, 257, 476
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	37, 278, 334
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	77, 184
HpaII	CCGG	4 cut(s)	210, 248, 257, 476
HphI	GGTGA	2 cut(s)	271, 476
Hpy166II	GTNNAC	2 cut(s)	223, 303
Hpy188I	TCNGA	2 cut(s)	170, 311
Hpy188III	TCNNGA	2 cut(s)	143, 519
Hpy8I	GTNNAC	2 cut(s)	223, 303
Hpy99I	CGWCG	2 cut(s)	157, 385
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	134, 348
HpyCH4V	TGCA	3 cut(s)	129, 463, 508
HpyF10VI	GCNNNNNNNGC	6 cut(s)	262, 271, 288, 371, 385, 391
HpyF3I	CTNAG	2 cut(s)	28, 375
HpySE526I	ACGT	2 cut(s)	134, 348
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	37, 278, 334
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	3 cut(s)	139, 285, 457
LpnPI	CCDG	7 cut(s)	163, 223, 261, 270, 299, 408, 489
Lsp1109I	GCAGC	2 cut(s)	346, 492
LweI	GCATC	1 cut(s)	381
MaeII	ACGT	2 cut(s)	134, 348
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	141, 287, 459
MboI	GATC	3 cut(s)	139, 285, 457
MboII	GAAGA	2 cut(s)	16, 415
MfeI	CAATTG	1 cut(s)	40
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	284, 376
MluCI	AATT	2 cut(s)	40, 451
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	91, 164, 176, 327
MspI	CCGG	4 cut(s)	210, 248, 257, 476
MspR9I	CCNGG	4 cut(s)	210, 248, 249, 477
MunI	CAATTG	1 cut(s)	40
MwoI	GCNNNNNNNGC	6 cut(s)	262, 271, 288, 371, 385, 391
NciI	CCSGG	4 cut(s)	210, 248, 249, 477
NdeII	GATC	3 cut(s)	139, 285, 457
NlaIII	CATG	3 cut(s)	37, 278, 334
NlaIV	GGNNCC	2 cut(s)	72, 471
NmuCI	GTSAC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	4 cut(s)	361, 364, 387, 507
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	72, 471
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	457
PsyI	GACNNNGTC	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	376
SatI	GCNGC	4 cut(s)	360, 363, 386, 506
Sau3AI	GATC	3 cut(s)	139, 285, 457
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	4 cut(s)	210, 248, 249, 477
SduI	GDGCHC	2 cut(s)	284, 376
SetI	ASST	9 cut(s)	29, 66, 137, 204, 228, 351, 361, 376, 507
SfaNI	GCATC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	506
SgrAI	CRCCGGYG	1 cut(s)	256
SmaI	CCCGGG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	40, 451
SsiI	CCGC	4 cut(s)	239, 291, 362, 386
SstI	GAGCTC	1 cut(s)	376
StyD4I	CCNGG	4 cut(s)	208, 246, 247, 475
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	137, 351
TaqI	TCGA	2 cut(s)	104, 370
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	40, 451
TauI	GCSGC	2 cut(s)	365, 388
TfiI	GAWTC	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	359, 505
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	451
XmaI	CCCGGG	1 cut(s)	247
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.