Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

44104355 .. 44105416

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0353300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGTCTTCCGGGATAACAAGTCTGTAATTTATCGTCCCCATGCTTTTCTTGAGACCAAGGGCTATTTTCTGTTAGACGATGAGAAACTATCAGACGAGAGGTTTGAGTTTGTTTTTGGCCTACGCTCTACATGCCTTCCTATGAGAGCAGATGGCCAGCTTATTTTGGAGTCGTATTATCCCAATAGATTTGCTCGTCAATTCGACTATGATCAGAGTGTTCCCTCAAACCGCCTCTCTTTTAGCGTGTCAAAGAGGAAGCAGTGTTTTGTTGAGGACTTAGCAAGAGCTCAGACTATTCTTTGCCGGAGGAGTACAACTGCTTGTTTTTATATCCCGAGATCAACACGTGAAGGGGAATGCACTTGGTGGTATTGCAAGTGGTGGTTGAAAGCTTTGAACAAACTTGCTAAAGTTTCTGCGGATTTGAGAAAGGAAGTTCAAATTTCATCTTTACCGAGGCAAGAAAGTCAGAATTCTCAAACGAGCATCGACAAGGTGGGGCCAGATGGTAATAACCGTTTTAGTAGGAAGCGCATTGGCCATGAGAAGGTGGCAACTTTTGAAGAGACAGTGTCCAAAGAGGCGAGTCTTCCCAAGATAGGAACTGATACTCAAGATGCACAAAAGGTACTCAAGAAGAAAACTAACAGTTTACATCCTTCTAATCCTTCAACAGTTGTTCCAAATGTCCAGCAAACAGAAACTGGATTTAGCTCTAATACTGATCCTTCTAGAGCAGAAATTGTAGTCCGGACTTTTAAAAGGAAAACTGCAGAGCGTCTGAGCAATGTGCATCCTCGAAGGGTTCAAACTACTATTGATCGGAGTGTTAAGAAAGCAGTTGTGCCGCATGAAGCCCGTATTTCTAGCAAAAATCCTTCGACCAAGTGCATGCCTACTGTAGAGGATGCGGGGAGCTTTCTTTCGACTATACTTGATCCTGGGTTAGCTTTCTTTCGACTATACTTGATCCTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

327

Amino Acids

37.39

Weight (kDa)

9.65

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	9 - 129	3.1e-08	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	753
AciI	CCGC	4 cut(s)	232, 422, 851, 914
AclWI	GGATC	3 cut(s)	722, 935, 967
AcoI	YGGCCR	2 cut(s)	154, 541
AcsI	RAATTY	2 cut(s)	444, 475
AcvI	CACGTG	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	316, 633
AfiI	CCNNNNNNNGG	2 cut(s)	550, 602
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	6 cut(s)	391, 400, 443, 566, 675, 812
AjnI	CCWGG	2 cut(s)	943, 975
AluBI	AGCT	6 cut(s)	160, 290, 395, 717, 921, 953
AluI	AGCT	6 cut(s)	160, 290, 395, 717, 921, 953
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	47, 563
AlwI	GGATC	3 cut(s)	722, 935, 967
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	337
Aor13HI	TCCGGA	1 cut(s)	753
AoxI	GGCC	4 cut(s)	118, 154, 503, 541
ApoI	RAATTY	2 cut(s)	444, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	337
BalI	TGGCCA	2 cut(s)	156, 543
BanII	GRGCYC	1 cut(s)	292
BbrPI	CACGTG	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	292
BccI	CCATC	2 cut(s)	146, 503
BciT130I	CCWGG	2 cut(s)	945, 977
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	2 cut(s)	47, 563
BfaI	CTAG	2 cut(s)	735, 870
BfmI	CTRYAG	2 cut(s)	774, 903
BisI	GCNGC	1 cut(s)	851
BlsI	GCNGC	1 cut(s)	852
Bme1390I	CCNGG	3 cut(s)	11, 945, 977
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	3 cut(s)	11, 945, 977
BmsI	GCATC	4 cut(s)	498, 610, 805, 901
BpiI	GAAGAC	1 cut(s)	584
BpuEI	CTTGAG	3 cut(s)	71, 600, 620
BpuMI	CCSGG	1 cut(s)	11
BsaAI	YACGTR	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	57, 458, 944, 976
BsaWI	WCCGGW	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 602
Bse1I	ACTGG	1 cut(s)	712
Bse3DI	GCAATG	1 cut(s)	796
BseAI	TCCGGA	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	945, 977
BseDI	CCNNGG	4 cut(s)	57, 458, 944, 976
BseGI	GGATG	3 cut(s)	658, 796, 916
BseLI	CCNNNNNNNGG	2 cut(s)	550, 602
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	2 cut(s)	305, 776
BseNI	ACTGG	1 cut(s)	712
BseRI	GAGGAG	1 cut(s)	325
BshFI	GGCC	4 cut(s)	120, 156, 505, 543
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	3 cut(s)	10, 307, 754
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	550, 602
BsmAI	GTCTC	2 cut(s)	47, 563
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	4 cut(s)	120, 156, 505, 543
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp13I	TCCGGA	1 cut(s)	753
Bsp143I	GATC	6 cut(s)	211, 341, 727, 823, 940, 972
BspACI	CCGC	4 cut(s)	232, 422, 851, 914
BspANI	GGCC	4 cut(s)	120, 156, 505, 543
BspCNI	CTCAG	2 cut(s)	304, 777
BspEI	TCCGGA	1 cut(s)	753
BspLI	GGNNCC	1 cut(s)	504
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	3 cut(s)	722, 935, 967
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	796
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	4 cut(s)	57, 458, 944, 976
BssMI	GATC	6 cut(s)	211, 341, 727, 823, 940, 972
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	945, 977
Bst4CI	ACNGT	5 cut(s)	521, 574, 653, 679, 904
Bst6I	CTCTTC	1 cut(s)	561
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	158, 896
BstDEI	CTNAG	3 cut(s)	280, 291, 785
BstF5I	GGATG	3 cut(s)	658, 796, 916
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	6 cut(s)	214, 344, 730, 826, 943, 975
BstMAI	GTCTC	2 cut(s)	47, 563
BstMBI	GATC	6 cut(s)	211, 341, 727, 823, 940, 972
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	2 cut(s)	945, 977
BstNSI	RCATGY	2 cut(s)	135, 898
BstSCI	CCNGG	3 cut(s)	9, 943, 975
BstSFI	CTRYAG	2 cut(s)	774, 903
BstV2I	GAAGAC	1 cut(s)	584
BsuRI	GGCC	4 cut(s)	120, 156, 505, 543
BtsCI	GGATG	3 cut(s)	658, 796, 916
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	269, 579
Cac8I	GCNNGC	2 cut(s)	158, 896
CaiI	CAGNNNCTG	1 cut(s)	707
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	770
Csp6I	GTAC	2 cut(s)	315, 632
CviAII	CATG	5 cut(s)	41, 132, 545, 854, 895
CviQI	GTAC	2 cut(s)	315, 632
DdeI	CTNAG	3 cut(s)	280, 291, 785
DpnI	GATC	6 cut(s)	213, 343, 729, 825, 942, 974
DpnII	GATC	6 cut(s)	211, 341, 727, 823, 940, 972
DraI	TTTAAA	1 cut(s)	763
DraIII	CACNNNGTG	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	154, 541
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Ecl136II	GAGCTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	290
Eco72I	CACGTG	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	2 cut(s)	943, 975
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	5 cut(s)	44, 135, 548, 857, 898
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	5 cut(s)	40, 131, 544, 853, 894
FauI	CCCGC	1 cut(s)	907
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	851
FokI	GGATG	3 cut(s)	645, 783, 923
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	851
FspBI	CTAG	2 cut(s)	735, 870
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	1 cut(s)	851
HaeIII	GGCC	4 cut(s)	120, 156, 505, 543
HapII	CCGG	3 cut(s)	10, 307, 754
HgaI	GACGC	1 cut(s)	770
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	5 cut(s)	44, 135, 548, 857, 898
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	2 cut(s)	170, 589
HpaII	CCGG	3 cut(s)	10, 307, 754
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188I	TCNGA	6 cut(s)	94, 216, 294, 474, 786, 828
Hpy188III	TCNNGA	6 cut(s)	50, 337, 617, 637, 735, 754
Hpy8I	GTNNAC	1 cut(s)	656
HpyAV	CCTTC	8 cut(s)	146, 347, 544, 672, 681, 741, 798, 891
HpyCH4III	ACNGT	5 cut(s)	521, 574, 653, 679, 904
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	6 cut(s)	363, 378, 623, 776, 796, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	280, 291, 785
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	5 cut(s)	44, 135, 548, 857, 898
HspAI	GCGC	1 cut(s)	535
Kpn2I	TCCGGA	1 cut(s)	753
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	6 cut(s)	211, 341, 727, 823, 940, 972
LmnI	GCTCC	1 cut(s)	918
LweI	GCATC	4 cut(s)	498, 610, 805, 901
MaeI	CTAG	2 cut(s)	735, 870
MaeII	ACGT	1 cut(s)	349
MalI	GATC	6 cut(s)	213, 343, 729, 825, 942, 974
MboI	GATC	6 cut(s)	211, 341, 727, 823, 940, 972
MboII	GAAGA	3 cut(s)	578, 584, 652
MhlI	GDGCHC	1 cut(s)	292
MlsI	TGGCCA	2 cut(s)	156, 543
MluCI	AATT	5 cut(s)	27, 200, 444, 475, 744
MluNI	TGGCCA	2 cut(s)	156, 543
MlyI	GAGTC	2 cut(s)	179, 598
Mox20I	TGGCCA	2 cut(s)	156, 543
MroI	TCCGGA	1 cut(s)	753
MscI	TGGCCA	2 cut(s)	156, 543
MseI	TTAA	2 cut(s)	762, 834
Msp20I	TGGCCA	2 cut(s)	156, 543
MspI	CCGG	3 cut(s)	10, 307, 754
MspR9I	CCNGG	3 cut(s)	11, 945, 977
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	2 cut(s)	945, 977
MwoI	GCNNNNNNNGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	6 cut(s)	211, 341, 727, 823, 940, 972
NlaIII	CATG	5 cut(s)	44, 135, 548, 857, 898
NlaIV	GGNNCC	1 cut(s)	504
NspI	RCATGY	2 cut(s)	135, 898
PaeI	GCATGC	1 cut(s)	898
PctI	GAATGC	1 cut(s)	365
PflFI	GACNNNGTC	1 cut(s)	574
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	852
PleI	GAGTC	2 cut(s)	178, 597
PmaCI	CACGTG	1 cut(s)	350
PmlI	CACGTG	1 cut(s)	350
PpsI	GAGTC	2 cut(s)	178, 597
Ppu21I	YACGTR	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	943, 975
PspCI	CACGTG	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	943, 975
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	707
PsyI	GACNNNGTC	1 cut(s)	574
RsaI	GTAC	2 cut(s)	316, 633
RsaNI	GTAC	2 cut(s)	315, 632
SacI	GAGCTC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	762, 834
SatI	GCNGC	1 cut(s)	851
Sau3AI	GATC	6 cut(s)	211, 341, 727, 823, 940, 972
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	2 cut(s)	179, 598
ScrFI	CCNGG	3 cut(s)	11, 945, 977
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	4 cut(s)	498, 610, 805, 901
SfcI	CTRYAG	2 cut(s)	774, 903
SmlI	CTYRAG	3 cut(s)	50, 615, 635
SmoI	CTYRAG	3 cut(s)	50, 615, 635
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	5 cut(s)	27, 200, 444, 475, 744
SsiI	CCGC	4 cut(s)	232, 422, 851, 914
SspMI	CTAG	2 cut(s)	735, 870
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	3 cut(s)	9, 943, 975
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	5 cut(s)	521, 574, 653, 679, 904
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	6 cut(s)	204, 492, 802, 884, 929, 961
TasI	AATT	5 cut(s)	27, 200, 444, 475, 744
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	1 cut(s)	853
Tru1I	TTAA	2 cut(s)	762, 834
Tru9I	TTAA	2 cut(s)	762, 834
TscAI	CASTG	2 cut(s)	269, 579
TspDTI	ATGAA	2 cut(s)	438, 870
TspRI	CASTG	2 cut(s)	269, 579
Tth111I	GACNNNGTC	1 cut(s)	574
XapI	RAATTY	2 cut(s)	444, 475
XbaI	TCTAGA	1 cut(s)	734
XceI	RCATGY	2 cut(s)	135, 898
XspI	CTAG	2 cut(s)	735, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.