Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

69309030 .. 69320302

Gene Structure 11273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG428800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAGAGAGGCAGAGAAGATGATCAGCAGACCCTGGATTTGATCAATTGTTTGATGCTACTATCCAAAGTAGACCAAAATGACTCCTCCTCAATCAAAAAACAAAAGATCTCGGACCGTGTCTTTGTTTGTAAGACGTGTAATCGGGAGTTCTCGTCGTTCCAAGCCCTCGGAGGCCATAGAGCGAGCCACAAGAAACCGAGCGGTGCAGACCAGTTACAGCTTGCACAGCCGAGCTCGCCGGCAAAGCCCAAGAAGCACGAGTGTCCGATCTGCAGGATGGAATTCGCAGTTGGTCAAGCGCTTGGGGGACACATGAGGAGACATAGAGATGTTATGAGTTCTGCTGCGGAAAGGATTCGGGCGGCAGCTGTGCCGGTATTGAAGAAATCAAATAGTAGTAAAAGGGTATCGTGCTTGAATCTGGATTTGAATTTGGCACCGCCGGGATATCCGCATCTTTATGATTTGACAGAGTTGCATCATGGAGAGTGCCCAAGATGTCCTCCTCCCGATACAAATGGAACCTGCAAAAGTCTTGTGGGCAAACCCACAAGAAATCCAAAAGTCAAAACCATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

194

Amino Acids

21.45

Weight (kDa)

9.6

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 67	2.5e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	87 - 111	8e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	5 cut(s)	204, 350, 365, 443, 455
AcsI	RAATTY	2 cut(s)	284, 433
AfeI	AGCGCT	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	385, 421, 433
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	3 cut(s)	223, 237, 371
AluI	AGCT	3 cut(s)	223, 237, 371
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	34
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	347, 368
ApoI	RAATTY	2 cut(s)	284, 433
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 107, 139
AseI	ATTAAT	1 cut(s)	579
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	239
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	334, 380
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	35
BclI	TGATCA	2 cut(s)	22, 42
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	316
BfmI	CTRYAG	1 cut(s)	274
BfoI	RGCGCY	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	108
BisI	GCNGC	3 cut(s)	348, 366, 369
BlsI	GCNGC	3 cut(s)	349, 367, 370
Bme1390I	CCNGG	2 cut(s)	35, 447
Bme18I	GGWCC	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	441, 526
BmrFI	CCNGG	2 cut(s)	35, 447
BmsI	GCATC	3 cut(s)	45, 466, 490
BpuMI	CCSGG	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	33, 169
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bse118I	RCCGGY	2 cut(s)	241, 376
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	33, 169
BseGI	GGATG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	4 cut(s)	76, 79, 334, 498
BseSI	GKGCMC	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	334, 380
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	242, 377, 446
BslFI	GGGAC	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	239, 497
Bsp143I	GATC	4 cut(s)	22, 42, 108, 270
BspACI	CCGC	5 cut(s)	204, 350, 365, 443, 455
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	441, 526
BspMAI	CTGCAG	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	439
BsrBI	CCGCTC	1 cut(s)	204
BsrFI	RCCGGY	2 cut(s)	241, 376
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	2 cut(s)	241, 376
BssECI	CCNNGG	2 cut(s)	33, 169
BssMI	GATC	4 cut(s)	22, 42, 108, 270
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	187, 225, 239, 243
BstF5I	GGATG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	4 cut(s)	25, 45, 111, 273
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	4 cut(s)	22, 42, 108, 270
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 238, 247, 256
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	33, 445
BstSFI	CTRYAG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	334, 380
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	4 cut(s)	187, 225, 239, 243
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	241, 376
Cfr13I	GGNCC	1 cut(s)	115
CpoI	CGGWCCG	1 cut(s)	115
CspI	CGGWCCG	1 cut(s)	115
CviAII	CATG	2 cut(s)	316, 485
CviJI	RGCY	8 cut(s)	167, 177, 189, 223, 232, 237, 250, 371
CviKI_1	RGCY	8 cut(s)	167, 177, 189, 223, 232, 237, 250, 371
DpnI	GATC	4 cut(s)	24, 44, 110, 272
DpnII	GATC	4 cut(s)	22, 42, 108, 270
Ecl136II	GAGCTC	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	115
Eco47III	AGCGCT	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	452
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	2 cut(s)	319, 488
FaiI	YATR	6 cut(s)	180, 317, 327, 338, 465, 486
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	2 cut(s)	315, 484
FbaI	TGATCA	2 cut(s)	22, 42
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	348, 366, 369
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	348, 366, 369
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	3 cut(s)	348, 366, 369
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	3 cut(s)	242, 377, 446
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	2 cut(s)	319, 488
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	3 cut(s)	83, 358, 421
HpaII	CCGG	3 cut(s)	242, 377, 446
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	115, 173, 270
Hpy188III	TCNNGA	3 cut(s)	146, 425, 512
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	209, 227, 276, 481, 531
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 238, 247, 256
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	319, 488
HspAI	GCGC	1 cut(s)	302
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	2 cut(s)	22, 42
Kzo9I	GATC	4 cut(s)	22, 42, 108, 270
LpnPI	CCDG	9 cut(s)	20, 47, 227, 255, 262, 390, 410, 459, 541
Lsp1109I	GCAGC	2 cut(s)	334, 380
LweI	GCATC	3 cut(s)	45, 466, 490
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	4 cut(s)	24, 44, 110, 272
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	4 cut(s)	22, 42, 108, 270
MboII	GAAGA	3 cut(s)	16, 29, 397
MfeI	CAATTG	1 cut(s)	46
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	239, 497
MluCI	AATT	4 cut(s)	46, 284, 433, 580
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	7 cut(s)	97, 100, 167, 179, 312, 516, 519
MroNI	GCCGGC	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	579, 583
MslI	CAYNNNNRTG	2 cut(s)	330, 462
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	3 cut(s)	242, 377, 446
MspR9I	CCNGG	2 cut(s)	35, 447
MunI	CAATTG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	229, 238, 247, 256
NaeI	GCCGGC	1 cut(s)	243
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	4 cut(s)	22, 42, 108, 270
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	319, 488
NlaIV	GGNNCC	2 cut(s)	441, 526
NmeAIII	GCCGAG	1 cut(s)	258
PacI	TTAATTAA	1 cut(s)	583
PdiI	GCCGGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	358, 421
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	349, 367, 370
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	579
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	441, 526
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	108
PsyI	GACNNNGTC	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	371
RseI	CAYNNNNRTG	2 cut(s)	330, 462
Rsr2I	CGGWCCG	1 cut(s)	115
RsrII	CGGWCCG	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	579, 583
SatI	GCNGC	3 cut(s)	348, 366, 369
Sau3AI	GATC	4 cut(s)	22, 42, 108, 270
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	35, 447
SduI	GDGCHC	2 cut(s)	239, 497
SetI	ASST	5 cut(s)	140, 225, 239, 373, 530
SfaNI	GCATC	3 cut(s)	45, 466, 490
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	2 cut(s)	330, 462
Sse9I	AATT	4 cut(s)	46, 284, 433, 580
SsiI	CCGC	5 cut(s)	204, 350, 365, 443, 455
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	33, 445
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	140
TasI	AATT	4 cut(s)	46, 284, 433, 580
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	358, 421
Tru1I	TTAA	2 cut(s)	579, 583
Tru9I	TTAA	2 cut(s)	579, 583
TseI	GCWGC	2 cut(s)	347, 368
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	2 cut(s)	284, 433
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.