Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

23652004 .. 23652594

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1123300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAACATGAAGAGAAGCATCACAGATATGAGAGAGCTTGATCACGGCCTTACCATGGCCAACTGTTTGATGCTACTTTCCCGTGGCATCAACTACAACGCTAATCAATATGACTCCTTCTCTGTCTCCCCTAACCGGGTTTTCGAGTGCAAGACCTGCAATCGCCAGTTCCCTTCGTTCCAAGCGCTTGGAGGTCACCGTGCCAGTCACAAGAAGCCCAGGTTAACCGGATCATCAGGAGAAGGAAACAGCAATAGTTCTGATCAGAGTCTGTCACAAGGTTCACCACCAAAACCTAAGACGCATGAGTGCAACATATGTGGCCTAGAGTTTCCTATAGGGCAGGCCTTGGGGGGTCACATGAGGAGGCACAGGGCAGCCTTGAGCGGTAGCAATACTACTAGCAATGTTCATGAGCGATATTCAAGTTCGAATAGTCTAAATCCTCAGCCTGCGCAAGTATTTCAAGTTTTGAAGAAGACGAATAGCGGTAGGAGAGCTATGTGTTTGGATCTGAACTTAACGCCATTAGAGAATGACTTGGAGACTCTTCAGCTAGGGAAAGCAGCTCCACTTGTTGGGTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

197

Amino Acids

21.48

Weight (kDa)

9.44

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	47 - 73	4.6e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	102 - 126	8.8e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	456
Acc36I	ACCTGC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	387
AciI	CCGC	2 cut(s)	387, 489
AclWI	GGATC	2 cut(s)	238, 519
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	536
AfeI	AGCGCT	1 cut(s)	186
AfiI	CCNNNNNNNGG	4 cut(s)	55, 135, 136, 578
AgsI	TTSAA	3 cut(s)	426, 467, 475
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	4 cut(s)	37, 500, 556, 569
AluI	AGCT	4 cut(s)	37, 500, 556, 569
Alw26I	GTCTC	2 cut(s)	130, 539
AlwI	GGATC	2 cut(s)	238, 519
AlwNI	CAGNNNCTG	1 cut(s)	271
Aor51HI	AGCGCT	1 cut(s)	186
AoxI	GGCC	4 cut(s)	46, 57, 322, 345
ApeKI	GCWGC	2 cut(s)	377, 566
AspLEI	GCGC	2 cut(s)	187, 457
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	188, 276
AsuII	TTCGAA	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	485
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	389, 578
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	220
BclI	TGATCA	2 cut(s)	40, 262
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	130, 539
BfaI	CTAG	3 cut(s)	326, 402, 557
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	378, 567
BlsI	GCNGC	2 cut(s)	379, 568
Bme1390I	CCNGG	2 cut(s)	137, 220
BmrFI	CCNGG	2 cut(s)	137, 220
BmsI	GCATC	3 cut(s)	27, 60, 96
BpiI	GAAGAC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	4 cut(s)	54, 82, 218, 348
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 135, 136, 578
Bse1I	ACTGG	2 cut(s)	166, 204
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	4 cut(s)	54, 82, 218, 348
BseLI	CCNNNNNNNGG	4 cut(s)	55, 135, 136, 578
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	166, 204
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	389, 578
BshFI	GGCC	4 cut(s)	48, 59, 324, 347
BsiSI	CCGG	2 cut(s)	136, 228
BslI	CCNNNNNNNGG	4 cut(s)	55, 135, 136, 578
BsmAI	GTCTC	2 cut(s)	130, 539
BsnI	GGCC	4 cut(s)	48, 59, 324, 347
Bsp119I	TTCGAA	1 cut(s)	431
Bsp143I	GATC	4 cut(s)	40, 230, 262, 511
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	2 cut(s)	387, 489
BspANI	GGCC	4 cut(s)	48, 59, 324, 347
BspCNI	CTCAG	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	238, 519
BspT104I	TTCGAA	1 cut(s)	431
BsrBI	CCGCTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	166, 204
BssECI	CCNNGG	4 cut(s)	54, 82, 218, 348
BssMI	GATC	4 cut(s)	40, 230, 262, 511
BssT1I	CCWWGG	2 cut(s)	54, 348
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	65, 200
Bst6I	CTCTTC	2 cut(s)	5, 555
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	345, 453
BstDEI	CTNAG	2 cut(s)	297, 447
BstDSI	CCRYGG	2 cut(s)	54, 82
BstEII	GGTNACC	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	187, 457
BstKTI	GATC	4 cut(s)	43, 233, 265, 514
BstMAI	GTCTC	2 cut(s)	130, 539
BstMBI	GATC	4 cut(s)	40, 230, 262, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	220
BstPI	GGTNACC	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	135, 218
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	389, 578
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	4 cut(s)	48, 59, 324, 347
BtgI	CCRYGG	2 cut(s)	54, 82
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	345, 453
CaiI	CAGNNNCTG	1 cut(s)	271
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	187, 457
CseI	GACGC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	5 cut(s)	7, 55, 305, 361, 413
DdeI	CTNAG	2 cut(s)	297, 447
DpnI	GATC	4 cut(s)	42, 232, 264, 513
DpnII	GATC	4 cut(s)	40, 230, 262, 511
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	5, 555
EarI	CTCTTC	2 cut(s)	5, 555
Eco130I	CCWWGG	2 cut(s)	54, 348
Eco147I	AGGCCT	1 cut(s)	347
Eco47III	AGCGCT	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	194
EcoO65I	GGTNACC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	54, 348
ErhI	CCWWGG	2 cut(s)	54, 348
FaeI	CATG	5 cut(s)	10, 58, 308, 364, 416
FatI	CATG	5 cut(s)	6, 54, 304, 360, 412
FauNDI	CATATG	1 cut(s)	317
FbaI	TGATCA	2 cut(s)	40, 262
Fnu4HI	GCNGC	2 cut(s)	378, 567
Fsp4HI	GCNGC	2 cut(s)	378, 567
FspBI	CTAG	3 cut(s)	326, 402, 557
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	2 cut(s)	186, 456
GluI	GCNGC	2 cut(s)	378, 567
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	4 cut(s)	48, 59, 324, 347
HapII	CCGG	2 cut(s)	136, 228
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	2 cut(s)	187, 457
Hin1II	CATG	5 cut(s)	10, 58, 308, 364, 416
Hin6I	GCGC	2 cut(s)	185, 455
HinP1I	GCGC	2 cut(s)	185, 455
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	3 cut(s)	113, 268, 547
HpaI	GTTAAC	1 cut(s)	225
HpaII	CCGG	2 cut(s)	136, 228
HphI	GGTGA	2 cut(s)	188, 276
Hpy166II	GTNNAC	2 cut(s)	225, 284
Hpy188I	TCNGA	3 cut(s)	262, 267, 516
Hpy188III	TCNNGA	2 cut(s)	237, 413
Hpy8I	GTNNAC	2 cut(s)	225, 284
HpyAV	CCTTC	3 cut(s)	127, 183, 236
HpyCH4III	ACNGT	2 cut(s)	65, 200
HpyCH4V	TGCA	3 cut(s)	150, 159, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	297, 447
Hsp92II	CATG	5 cut(s)	10, 58, 308, 364, 416
HspAI	GCGC	2 cut(s)	185, 455
Ksp22I	TGATCA	2 cut(s)	40, 262
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	40, 230, 262, 511
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	2 cut(s)	389, 578
LweI	GCATC	3 cut(s)	27, 60, 96
MaeI	CTAG	3 cut(s)	326, 402, 557
MaeIII	GTNAC	4 cut(s)	194, 206, 273, 356
MalI	GATC	4 cut(s)	42, 232, 264, 513
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	4 cut(s)	40, 230, 262, 511
MboII	GAAGA	4 cut(s)	22, 487, 490, 542
MflI	RGATCY	1 cut(s)	511
MlsI	TGGCCA	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	3 cut(s)	107, 277, 541
MnlI	CCTC	4 cut(s)	185, 357, 360, 456
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	224, 521
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	59
MspI	CCGG	2 cut(s)	136, 228
MspR9I	CCNGG	2 cut(s)	137, 220
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	317
NdeII	GATC	4 cut(s)	40, 230, 262, 511
NlaIII	CATG	5 cut(s)	10, 58, 308, 364, 416
NmuCI	GTSAC	4 cut(s)	194, 206, 273, 356
NsbI	TGCGCA	1 cut(s)	456
NspV	TTCGAA	1 cut(s)	431
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	379, 568
PleI	GAGTC	3 cut(s)	107, 276, 541
PpsI	GAGTC	3 cut(s)	107, 276, 541
Psp6I	CCWGG	1 cut(s)	218
PspEI	GGTNACC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	224, 521
SatI	GCNGC	2 cut(s)	378, 567
Sau3AI	GATC	4 cut(s)	40, 230, 262, 511
SchI	GAGTC	3 cut(s)	107, 277, 541
ScrFI	CCNGG	2 cut(s)	137, 220
SetI	ASST	9 cut(s)	39, 158, 196, 224, 283, 298, 502, 558, 571
SfaNI	GCATC	3 cut(s)	27, 60, 96
SfcI	CTRYAG	1 cut(s)	336
SfuI	TTCGAA	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	2 cut(s)	387, 489
SspMI	CTAG	3 cut(s)	326, 402, 557
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	135, 218
StyI	CCWWGG	2 cut(s)	54, 348
TaaI	ACNGT	2 cut(s)	65, 200
TaqI	TCGA	2 cut(s)	144, 431
Tru1I	TTAA	2 cut(s)	224, 521
Tru9I	TTAA	2 cut(s)	224, 521
TseFI	GTSAC	4 cut(s)	194, 206, 273, 356
TseI	GCWGC	2 cut(s)	377, 566
Tsp45I	GTSAC	4 cut(s)	194, 206, 273, 356
TspDTI	ATGAA	3 cut(s)	17, 23, 401
Van91I	CCANNNNNTGG	1 cut(s)	578
XspI	CTAG	3 cut(s)	326, 402, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.