Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010322.1

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

52539 .. 56826

Gene Structure 4288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010322.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgcaggtgggcttggacgctgcctattctgatttattctctctggaacagtcggaacgttcaaacttcaaggggtttaggctgcctctaacactcgctctagcaatgtggtgggctggtggtgttactgtgtcattcccattggaaaacaaaattattacaataatacagaacccttcacatgacgctgcctattctgatttattctctctggaacagtcggaacgttcaaacttcaaggggtttaggctgcctctaacactcgctctagcaatgtggtgggctggtggtgttactgtgtcattcccattggaaaacaaaattattacaataatacagaacccttcacatgacttacttgccaagtcttcaagggcaaacccgtacacgtcgttgctactttcgtctcgtatttcatctcgaaagctgatcaaattcgaaactccacaaaccagcttggccatgaaaagaggcagagaagatgagcagaccatggacttggttggttgcttgatgctgctatcaaaagttggccaaaatgattcgtccccaatcaaaaaacaaaagacctctgaccgtgcctttgtttgcaagacatgtaatcgcgagttctcatcgttccaagccctcggaggccacagagcgagccataacaagccgaaaaaaatggccggtggagccacagaccttttacagcttgctcagttggcgcctatttcaccggcaaagcccaagacccacgagtgccctgtctgtgggcttgaattcgcaatcgggcaagcgcttggaggacacatgaggagacatagggacgttatgaattctgcttctgccgatcgagttcgggcagcagccgtgccggtgttgaagaaatccaatagtagcaaaagggtgtcgtgcttgaatctggatttgaatttggcaccacccggatatcaacatcagctattgttggcaggatttcagcaaccagactctggtgaagtttcctatgacttctctctctctctctctctctctctcaccggcgaggtttttagagaagtctggtggatggcaggaggtgatcggattccggcgaccggtagtggaaatcaggctattgttggcaggatttcagcgactggactctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

378

Amino Acids

41.32

Weight (kDa)

9.43

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	709, 922
AccB7I	CCANNNNNTGG	1 cut(s)	977
AccII	CGCG	1 cut(s)	606
AclI	AACGTT	2 cut(s)	58, 226
AcoI	YGGCCR	3 cut(s)	459, 532, 669
AcsI	RAATTY	4 cut(s)	434, 764, 820, 916
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	1 cut(s)	386
AfeI	AGCGCT	1 cut(s)	783
AfiI	CCNNNNNNNGG	3 cut(s)	755, 977, 1082
AflIII	ACRYGT	2 cut(s)	387, 596
AgeI	ACCGGT	1 cut(s)	1082
AgsI	TTSAA	9 cut(s)	63, 70, 231, 238, 372, 764, 868, 904, 916
AjiI	CACGTC	1 cut(s)	390
AluBI	AGCT	4 cut(s)	427, 456, 697, 946
AluI	AGCT	4 cut(s)	427, 456, 697, 946
Alw26I	GTCTC	2 cut(s)	411, 796
AlwNI	CAGNNNCTG	2 cut(s)	977, 1124
Aor51HI	AGCGCT	1 cut(s)	783
AoxI	GGCC	4 cut(s)	459, 532, 634, 669
ApeKI	GCWGC	7 cut(s)	20, 82, 188, 250, 517, 848, 851
ApoI	RAATTY	4 cut(s)	434, 764, 820, 916
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
AsiGI	ACCGGT	1 cut(s)	1082
AspLEI	GCGC	2 cut(s)	712, 784
AsuC2I	CCSGG	1 cut(s)	930
AsuHPI	GGTGA	4 cut(s)	711, 992, 1015, 1076
AsuII	TTCGAA	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	749
BalI	TGGCCA	2 cut(s)	461, 534
BanI	GGYRCC	2 cut(s)	709, 922
BauI	CACGAG	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	7 cut(s)	7, 69, 175, 237, 504, 860, 863
BccI	CCATC	1 cut(s)	1048
BceAI	ACGGC	1 cut(s)	839
BclI	TGATCA	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	930
BcoDI	GTCTC	2 cut(s)	411, 796
BfaI	CTAG	2 cut(s)	101, 269
BfoI	RGCGCY	2 cut(s)	713, 785
BisI	GCNGC	7 cut(s)	21, 83, 189, 251, 518, 849, 852
BlsI	GCNGC	7 cut(s)	22, 84, 190, 252, 519, 850, 853
Bme1390I	CCNGG	1 cut(s)	930
BmgBI	CACGTC	1 cut(s)	390
BmiI	GGNNCC	3 cut(s)	679, 711, 924
BmrFI	CCNGG	1 cut(s)	930
BmsI	GCATC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	930
BsaHI	GRCGYC	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	492, 628
BsaWI	WCCGGW	1 cut(s)	1082
Bsc4I	CCNNNNNNNGG	3 cut(s)	755, 977, 1082
Bse118I	RCCGGY	5 cut(s)	671, 721, 859, 1025, 1082
Bse1I	ACTGG	1 cut(s)	1129
Bse3DI	GCAATG	2 cut(s)	111, 279
BseDI	CCNNGG	2 cut(s)	492, 628
BseGI	GGATG	1 cut(s)	1059
BseLI	CCNNNNNNNGG	3 cut(s)	755, 977, 1082
BseMI	GCAATG	2 cut(s)	111, 279
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	1129
BseRI	GAGGAG	1 cut(s)	814
BseSI	GKGCMC	1 cut(s)	749
BseXI	GCAGC	7 cut(s)	7, 69, 175, 237, 504, 860, 863
Bsh1236I	CGCG	1 cut(s)	606
Bsh1285I	CGRYCG	2 cut(s)	838, 1083
BshFI	GGCC	4 cut(s)	461, 534, 636, 671
BshNI	GGYRCC	2 cut(s)	709, 922
BshTI	ACCGGT	1 cut(s)	1082
BsiEI	CGRYCG	2 cut(s)	838, 1083
BsiSI	CCGG	7 cut(s)	672, 722, 860, 930, 1026, 1076, 1083
BslFI	GGGAC	2 cut(s)	532, 824
BslI	CCNNNNNNNGG	3 cut(s)	755, 977, 1082
BsmAI	GTCTC	2 cut(s)	411, 796
BsmBI	CGTCTC	1 cut(s)	411
BsmFI	GGGAC	2 cut(s)	532, 824
BsnI	GGCC	4 cut(s)	461, 534, 636, 671
Bsp119I	TTCGAA	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	749
Bsp143I	GATC	3 cut(s)	429, 835, 1066
Bsp19I	CCATGG	1 cut(s)	492
Bsp68I	TCGCGA	1 cut(s)	606
BspANI	GGCC	4 cut(s)	461, 534, 636, 671
BspCNI	CTCAG	1 cut(s)	715
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	3 cut(s)	679, 711, 924
BspT104I	TTCGAA	1 cut(s)	438
BspT107I	GGYRCC	2 cut(s)	709, 922
BsrDI	GCAATG	2 cut(s)	111, 279
BsrFI	RCCGGY	5 cut(s)	671, 721, 859, 1025, 1082
BsrI	ACTGG	1 cut(s)	1129
BssAI	RCCGGY	5 cut(s)	671, 721, 859, 1025, 1082
BssECI	CCNNGG	2 cut(s)	492, 628
BssMI	GATC	3 cut(s)	429, 835, 1066
BssNI	GRCGYC	1 cut(s)	710
BssSI	CACGAG	1 cut(s)	740
BssT1I	CCWWGG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	740
Bst4CI	ACNGT	5 cut(s)	51, 130, 219, 298, 578
BstACI	GRCGYC	1 cut(s)	710
BstBI	TTCGAA	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	646, 699, 780
BstDEI	CTNAG	1 cut(s)	702
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	1059
BstFNI	CGCG	1 cut(s)	606
BstH2I	RGCGCY	2 cut(s)	713, 785
BstHHI	GCGC	2 cut(s)	712, 784
BstKTI	GATC	3 cut(s)	432, 838, 1069
BstMAI	GTCTC	2 cut(s)	411, 796
BstMBI	GATC	3 cut(s)	429, 835, 1066
BstMCI	CGRYCG	2 cut(s)	838, 1083
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 707
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	928
BstSLI	GKGCMC	1 cut(s)	749
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	7 cut(s)	7, 69, 175, 237, 504, 860, 863
BstV2I	GAAGAC	1 cut(s)	360
BstXI	CCANNNNNNTGG	1 cut(s)	499
BsuRI	GGCC	4 cut(s)	461, 534, 636, 671
BtgI	CCRYGG	1 cut(s)	492
BtrI	CACGTC	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	1059
BtuMI	TCGCGA	1 cut(s)	606
Cac8I	GCNNGC	3 cut(s)	646, 699, 780
CaiI	CAGNNNCTG	2 cut(s)	977, 1124
CfoI	GCGC	2 cut(s)	712, 784
Cfr10I	RCCGGY	5 cut(s)	671, 721, 859, 1025, 1082
CseI	GACGC	2 cut(s)	26, 194
Csp6I	GTAC	1 cut(s)	385
CspAI	ACCGGT	1 cut(s)	1082
CviAII	CATG	6 cut(s)	182, 350, 463, 493, 597, 796
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	1 cut(s)	702
DinI	GGCGCC	1 cut(s)	711
DpnI	GATC	3 cut(s)	431, 837, 1068
DpnII	GATC	3 cut(s)	429, 835, 1066
EaeI	YGGCCR	3 cut(s)	459, 532, 669
Eco130I	CCWWGG	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	935
Eco47III	AGCGCT	1 cut(s)	783
EcoRI	GAATTC	2 cut(s)	764, 820
EcoRV	GATATC	1 cut(s)	935
EcoT14I	CCWWGG	1 cut(s)	492
EgeI	GGCGCC	1 cut(s)	711
EheI	GGCGCC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	6 cut(s)	185, 353, 466, 496, 600, 799
FaqI	GGGAC	2 cut(s)	532, 824
FatI	CATG	6 cut(s)	181, 349, 462, 492, 596, 795
FbaI	TGATCA	1 cut(s)	429
Fnu4HI	GCNGC	7 cut(s)	21, 83, 189, 251, 518, 849, 852
FokI	GGATG	1 cut(s)	1066
Fsp4HI	GCNGC	7 cut(s)	21, 83, 189, 251, 518, 849, 852
FspBI	CTAG	2 cut(s)	101, 269
GlaI	GCGC	2 cut(s)	711, 783
GluI	GCNGC	7 cut(s)	21, 83, 189, 251, 518, 849, 852
HaeII	RGCGCY	2 cut(s)	713, 785
HaeIII	GGCC	4 cut(s)	461, 534, 636, 671
HapII	CCGG	7 cut(s)	672, 722, 860, 930, 1026, 1076, 1083
HgaI	GACGC	2 cut(s)	26, 194
HhaI	GCGC	2 cut(s)	712, 784
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	6 cut(s)	185, 353, 466, 496, 600, 799
Hin6I	GCGC	2 cut(s)	710, 782
HinP1I	GCGC	2 cut(s)	710, 782
HinfI	GANTC	5 cut(s)	542, 904, 974, 1072, 1128
HpaII	CCGG	7 cut(s)	672, 722, 860, 930, 1026, 1076, 1083
HphI	GGTGA	4 cut(s)	711, 992, 1015, 1076
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	7 cut(s)	31, 55, 199, 223, 574, 632, 1071
Hpy188III	TCNNGA	5 cut(s)	44, 212, 420, 605, 908
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	2 cut(s)	186, 354
HpyCH4III	ACNGT	5 cut(s)	51, 130, 219, 298, 578
HpyCH4IV	ACGT	4 cut(s)	58, 226, 389, 813
HpyCH4V	TGCA	2 cut(s)	4, 591
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 707
HpyF3I	CTNAG	1 cut(s)	702
HpySE526I	ACGT	4 cut(s)	58, 226, 389, 813
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	6 cut(s)	185, 353, 466, 496, 600, 799
HspAI	GCGC	2 cut(s)	710, 782
KasI	GGCGCC	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	429, 835, 1066
LmnI	GCTCC	1 cut(s)	677
Lsp1109I	GCAGC	7 cut(s)	7, 69, 175, 237, 504, 860, 863
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	2 cut(s)	101, 269
MaeII	ACGT	4 cut(s)	58, 226, 389, 813
MaeIII	GTNAC	2 cut(s)	124, 292
MalI	GATC	3 cut(s)	431, 837, 1068
MboI	GATC	3 cut(s)	429, 835, 1066
MboII	GAAGA	3 cut(s)	360, 491, 880
MhlI	GDGCHC	1 cut(s)	749
MlsI	TGGCCA	2 cut(s)	461, 534
MluCI	AATT	6 cut(s)	153, 321, 434, 764, 820, 916
MluNI	TGGCCA	2 cut(s)	461, 534
Mly113I	GGCGCC	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	968, 1122
MmeI	TCCRAC	2 cut(s)	33, 201
Mox20I	TGGCCA	2 cut(s)	461, 534
MscI	TGGCCA	2 cut(s)	461, 534
Msp20I	TGGCCA	2 cut(s)	461, 534
MspI	CCGG	7 cut(s)	672, 722, 860, 930, 1026, 1076, 1083
MspR9I	CCNGG	1 cut(s)	930
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	677, 707
NarI	GGCGCC	1 cut(s)	710
NciI	CCSGG	1 cut(s)	930
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	3 cut(s)	429, 835, 1066
NlaIII	CATG	6 cut(s)	185, 353, 466, 496, 600, 799
NlaIV	GGNNCC	3 cut(s)	679, 711, 924
NruI	TCGCGA	1 cut(s)	606
NspI	RCATGY	1 cut(s)	600
NspV	TTCGAA	1 cut(s)	438
PciI	ACATGT	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	542, 904, 1072
PflMI	CCANNNNNTGG	1 cut(s)	977
PinAI	ACCGGT	1 cut(s)	1082
PkrI	GCNGC	7 cut(s)	22, 84, 190, 252, 519, 850, 853
Ple19I	CGATCG	1 cut(s)	838
PleI	GAGTC	2 cut(s)	968, 1122
PluTI	GGCGCC	1 cut(s)	713
PpsI	GAGTC	2 cut(s)	968, 1122
PscI	ACATGT	1 cut(s)	596
Psp1406I	AACGTT	2 cut(s)	58, 226
PspN4I	GGNNCC	3 cut(s)	679, 711, 924
PstNI	CAGNNNCTG	2 cut(s)	977, 1124
PvuI	CGATCG	1 cut(s)	838
RruI	TCGCGA	1 cut(s)	606
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SatI	GCNGC	7 cut(s)	21, 83, 189, 251, 518, 849, 852
Sau3AI	GATC	3 cut(s)	429, 835, 1066
SchI	GAGTC	2 cut(s)	968, 1122
ScrFI	CCNGG	1 cut(s)	930
SduI	GDGCHC	1 cut(s)	749
SfaNI	GCATC	1 cut(s)	504
SfoI	GGCGCC	1 cut(s)	711
SfuI	TTCGAA	1 cut(s)	438
SgrAI	CRCCGGYG	1 cut(s)	1025
Sse9I	AATT	6 cut(s)	153, 321, 434, 764, 820, 916
SspDI	GGCGCC	1 cut(s)	709
SspMI	CTAG	2 cut(s)	101, 269
StyD4I	CCNGG	1 cut(s)	928
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	5 cut(s)	51, 130, 219, 298, 578
TaiI	ACGT	4 cut(s)	61, 229, 392, 816
TaqI	TCGA	3 cut(s)	421, 438, 838
TasI	AATT	6 cut(s)	153, 321, 434, 764, 820, 916
TfiI	GAWTC	3 cut(s)	542, 904, 1072
TseI	GCWGC	7 cut(s)	20, 82, 188, 250, 517, 848, 851
TspDTI	ATGAA	3 cut(s)	405, 479, 833
Van91I	CCANNNNNTGG	1 cut(s)	977
XapI	RAATTY	4 cut(s)	434, 764, 820, 916
XceI	RCATGY	1 cut(s)	600
XspI	CTAG	2 cut(s)	101, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.