Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

30258060 .. 30259033

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAAAGAGACAGACAATTCGAAGATGAGCAGACCCTGGACTTGGTTAGTTGCTTGATGCAGTTGTCCAAAGCCGGCCAAAATGATTCGTTTCCCGTCAAAAAACAGAAGACGTCAGATCGTGCCTTTGTTTGCAAGACCTGTAATCGCGAGTTCTCCTCGTTCCAAGCCCTCGGAGGTCACAGGGCGAGCCACAACAAGCCGAAACTAATGGCCGGCGGAGCTACGGACCTTTTACAGCTTTCTCAGTCTACGGCTAGCTCGCCGGCGAAACCCAAGACGCATGAGTGCCCGATCTGCGGGCTTGAATTCGCACTTGGGCAAGCGCTTGGAGGACACATGAGAAGACATAGGGACCTTATGAGTTCTGCTGCTGCAGATCGAGTTCGGGCAGCAGCCGTGCCGGTGTTGAAGAAATCGAATAGTAGCAAAAGGGTGTCGTGTTTGAATCTGGATTTGAATTTGGCACCGCCGGGAGATCAACGTCATTACGATTTGACAAAGTTGCAGTTGATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

174

Amino Acids

18.98

Weight (kDa)

9.59

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	42 - 67	1.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	95 - 119	2.6e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	1 cut(s)	150
AciI	CCGC	3 cut(s)	219, 300, 470
AcoI	YGGCCR	2 cut(s)	76, 213
AcsI	RAATTY	2 cut(s)	308, 460
AcyI	GRCGYC	1 cut(s)	113
AfeI	AGCGCT	1 cut(s)	327
AfiI	CCNNNNNNNGG	2 cut(s)	43, 299
AgsI	TTSAA	4 cut(s)	308, 412, 448, 460
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	224, 241, 261
AluI	AGCT	3 cut(s)	224, 241, 261
Alw26I	GTCTC	1 cut(s)	3
AlwNI	CAGNNNCTG	1 cut(s)	37
Aor51HI	AGCGCT	1 cut(s)	327
AoxI	GGCC	2 cut(s)	76, 213
ApeKI	GCWGC	4 cut(s)	371, 374, 392, 395
ApoI	RAATTY	2 cut(s)	308, 460
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	229, 355
AsuC2I	CCSGG	1 cut(s)	474
AsuII	TTCGAA	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	229, 355
BaeGI	GKGCMC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	466
BbsI	GAAGAC	2 cut(s)	116, 352
BbvI	GCAGC	4 cut(s)	358, 361, 404, 407
BceAI	ACGGC	2 cut(s)	270, 383
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	329
BisI	GCNGC	4 cut(s)	372, 375, 393, 396
BlsI	GCNGC	4 cut(s)	373, 376, 394, 397
Bme1390I	CCNGG	2 cut(s)	38, 474
Bme18I	GGWCC	2 cut(s)	229, 355
BmgT120I	GGNCC	2 cut(s)	229, 355
BmiI	GGNNCC	2 cut(s)	356, 468
BmrFI	CCNGG	2 cut(s)	38, 474
BmsI	GCATC	1 cut(s)	48
BmtI	GCTAGC	1 cut(s)	261
BpiI	GAAGAC	2 cut(s)	116, 352
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu14I	TTCGAA	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	36, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 299
Bse118I	RCCGGY	4 cut(s)	74, 215, 265, 403
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	36, 172
BseLI	CCNNNNNNNGG	2 cut(s)	43, 299
BseMII	CTCAG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	148
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	4 cut(s)	358, 361, 404, 407
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	78, 215
BshNI	GGYRCC	1 cut(s)	466
BsiSI	CCGG	5 cut(s)	75, 216, 266, 404, 473
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	43, 299
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	78, 215
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	4 cut(s)	118, 294, 379, 478
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	3 cut(s)	219, 300, 470
BspANI	GGCC	2 cut(s)	78, 215
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	356, 468
BspMAI	CTGCAG	1 cut(s)	379
BspOI	GCTAGC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	466
BsrFI	RCCGGY	4 cut(s)	74, 215, 265, 403
BssAI	RCCGGY	4 cut(s)	74, 215, 265, 403
BssECI	CCNNGG	2 cut(s)	36, 172
BssMI	GATC	4 cut(s)	118, 294, 379, 478
BssNI	GRCGYC	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	8 cut(s)	76, 190, 217, 259, 263, 267, 302, 324
BstDEI	CTNAG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	4 cut(s)	121, 297, 382, 481
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	4 cut(s)	118, 294, 379, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 297
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	36, 472
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	4 cut(s)	358, 361, 404, 407
BstV2I	GAAGAC	2 cut(s)	116, 352
BsuRI	GGCC	2 cut(s)	78, 215
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	8 cut(s)	76, 190, 217, 259, 263, 267, 302, 324
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	4 cut(s)	74, 215, 265, 403
Cfr13I	GGNCC	2 cut(s)	229, 355
CseI	GACGC	1 cut(s)	289
CviAII	CATG	2 cut(s)	284, 340
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	4 cut(s)	120, 296, 381, 480
DpnII	GATC	4 cut(s)	118, 294, 379, 478
EaeI	YGGCCR	2 cut(s)	76, 213
EciI	GGCGGA	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	229, 355
Eco47III	AGCGCT	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	287, 343
FaiI	YATR	4 cut(s)	285, 341, 351, 362
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	283, 339
FauI	CCCGC	1 cut(s)	293
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	4 cut(s)	372, 375, 393, 396
Fsp4HI	GCNGC	4 cut(s)	372, 375, 393, 396
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	4 cut(s)	372, 375, 393, 396
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	78, 215
HapII	CCGG	5 cut(s)	75, 216, 266, 404, 473
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	287, 343
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	2 cut(s)	86, 448
HpaII	CCGG	5 cut(s)	75, 216, 266, 404, 473
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	118, 176
Hpy188III	TCNNGA	2 cut(s)	149, 452
Hpy8I	GTNNAC	1 cut(s)	252
HpyCH4IV	ACGT	2 cut(s)	113, 484
HpyCH4V	TGCA	4 cut(s)	61, 135, 377, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 297
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	113, 484
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	287, 343
HspAI	GCGC	1 cut(s)	326
KroI	GCCGGC	3 cut(s)	74, 215, 265
KroNI	GCCGGC	3 cut(s)	76, 217, 267
Kzo9I	GATC	4 cut(s)	118, 294, 379, 478
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	4 cut(s)	358, 361, 404, 407
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	2 cut(s)	113, 484
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	120, 296, 381, 480
MboI	GATC	4 cut(s)	118, 294, 379, 478
MboII	GAAGA	4 cut(s)	35, 121, 357, 424
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	3 cut(s)	17, 308, 460
MnlI	CCTC	4 cut(s)	169, 170, 182, 326
MreI	CGCCGGCG	1 cut(s)	265
MroNI	GCCGGC	3 cut(s)	74, 215, 265
MspI	CCGG	5 cut(s)	75, 216, 266, 404, 473
MspR9I	CCNGG	2 cut(s)	38, 474
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	221, 297
NaeI	GCCGGC	3 cut(s)	76, 217, 267
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	4 cut(s)	118, 294, 379, 478
NgoMIV	GCCGGC	3 cut(s)	74, 215, 265
NheI	GCTAGC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	287, 343
NlaIV	GGNNCC	2 cut(s)	356, 468
NmuCI	GTSAC	1 cut(s)	179
NruI	TCGCGA	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	21
PdiI	GCCGGC	3 cut(s)	76, 217, 267
PfeI	GAWTC	2 cut(s)	86, 448
PkrI	GCNGC	4 cut(s)	373, 376, 394, 397
PpuMI	RGGWCCY	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	356, 468
PspPI	GGNCC	2 cut(s)	229, 355
PspPPI	RGGWCCY	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	37
RruI	TCGCGA	1 cut(s)	150
SatI	GCNGC	4 cut(s)	372, 375, 393, 396
Sau3AI	GATC	4 cut(s)	118, 294, 379, 478
Sau96I	GGNCC	2 cut(s)	229, 355
ScrFI	CCNGG	2 cut(s)	38, 474
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	9 cut(s)	116, 143, 181, 226, 234, 243, 263, 360, 487
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	21
SgrAI	CRCCGGYG	1 cut(s)	265
SinI	GGWCC	2 cut(s)	229, 355
Sse9I	AATT	3 cut(s)	17, 308, 460
SsiI	CCGC	3 cut(s)	219, 300, 470
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	36, 472
TaiI	ACGT	2 cut(s)	116, 487
TaqI	TCGA	3 cut(s)	21, 382, 419
TasI	AATT	3 cut(s)	17, 308, 460
TfiI	GAWTC	2 cut(s)	86, 448
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	4 cut(s)	371, 374, 392, 395
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	229, 355
XapI	RAATTY	2 cut(s)	308, 460
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	258
ZraI	GACGTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.