Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

21659478 .. 21659957

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGAGAGCAAGAGAAGATGAGCAGCAAACCCAGGATTTGGTCAATTGCTTGATGCTACTGTCCAAGGTAGATCGGAACCATTCCTCCTCAATCAGAGAACAAAACTCCTCCGGCCGCGTCTTTGCTTGCAAGACGTGTAACCGGGAGTTCTCATCGTTCCAGGCCCTCGGAGGCCACAGAGCGAGCCACAAGAAGCCAAAACTAGACGGTGGTGCCGCGGATCTCTTACAGCTGGCCCAGCCTTCGTTGCCGGCGAAGCCCAAGGCGCACGAGTGCCCGATCTGCGGGATGGAATTCCCAATCGGGCAGGCGCTTGGGGGACACATGAGGAGACATAGAGACGTTATGAGTTCTGCGGCGGAGCGGATTAGGGCGGCGGCGGTGCCGGTGTTGAAGAAATCGAATAGTAGTAAAAGGGTGTCGTGGCTGAATCTGGACTTGAATTTGGCGCCGCCCGGTTATCATTTGATATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

159

Amino Acids

17.51

Weight (kDa)

9.8

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 67	5.1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	90 - 115	9.6e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	215, 385, 451
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	367
AccII	CGCG	2 cut(s)	120, 221
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	296, 445
AcyI	GRCGYC	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	40, 287
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	397, 445
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	2 cut(s)	33, 162
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	328, 336
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	4 cut(s)	115, 165, 175, 237
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	296, 445
AspLEI	GCGC	3 cut(s)	271, 316, 454
AspS9I	GGNCC	2 cut(s)	166, 238
AsuC2I	CCSGG	2 cut(s)	146, 459
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	3 cut(s)	215, 385, 451
BauI	CACGAG	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	2 cut(s)	35, 164
BcnI	CCSGG	2 cut(s)	146, 459
BcoDI	GTCTC	2 cut(s)	328, 336
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	2 cut(s)	317, 455
BisI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
BlsI	GCNGC	7 cut(s)	27, 119, 220, 361, 379, 382, 456
Bme1390I	CCNGG	4 cut(s)	35, 146, 164, 459
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	166, 238
BmiI	GGNNCC	4 cut(s)	80, 217, 387, 453
BmrFI	CCNGG	4 cut(s)	35, 146, 164, 459
BmsI	GCATC	1 cut(s)	45
BpuMI	CCSGG	2 cut(s)	146, 459
BsaHI	GRCGYC	1 cut(s)	452
BsaJI	CCNNGG	5 cut(s)	33, 66, 169, 219, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 287
Bse118I	RCCGGY	2 cut(s)	253, 388
BseBI	CCWGG	2 cut(s)	35, 164
BseDI	CCNNGG	5 cut(s)	33, 66, 169, 219, 264
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	40, 287
BseRI	GAGGAG	3 cut(s)	79, 100, 346
BseSI	GKGCMC	1 cut(s)	281
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	2 cut(s)	120, 221
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	4 cut(s)	117, 167, 177, 239
BshNI	GGYRCC	3 cut(s)	215, 385, 451
BsiEI	CGRYCG	1 cut(s)	118
BsiSI	CCGG	5 cut(s)	114, 145, 254, 389, 459
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	2 cut(s)	40, 287
BsmAI	GTCTC	2 cut(s)	328, 336
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	4 cut(s)	117, 167, 177, 239
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	73, 223, 282
BspANI	GGCC	4 cut(s)	117, 167, 177, 239
BspFNI	CGCG	2 cut(s)	120, 221
BspLI	GGNNCC	4 cut(s)	80, 217, 387, 453
BspPI	GGATC	1 cut(s)	231
BspT107I	GGYRCC	3 cut(s)	215, 385, 451
BsrBI	CCGCTC	1 cut(s)	367
BsrFI	RCCGGY	2 cut(s)	253, 388
BssAI	RCCGGY	2 cut(s)	253, 388
BssECI	CCNNGG	5 cut(s)	33, 66, 169, 219, 264
BssMI	GATC	3 cut(s)	73, 223, 282
BssNI	GRCGYC	1 cut(s)	452
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	2 cut(s)	66, 264
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	35, 164
Bst4CI	ACNGT	2 cut(s)	63, 212
BstACI	GRCGYC	1 cut(s)	452
BstC8I	GCNNGC	5 cut(s)	130, 187, 237, 255, 312
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	2 cut(s)	120, 221
BstH2I	RGCGCY	2 cut(s)	317, 455
BstHHI	GCGC	3 cut(s)	271, 316, 454
BstKTI	GATC	3 cut(s)	76, 226, 285
BstMAI	GTCTC	2 cut(s)	328, 336
BstMBI	GATC	3 cut(s)	73, 223, 282
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	5 cut(s)	241, 250, 259, 268, 285
BstNI	CCWGG	2 cut(s)	35, 164
BstSCI	CCNGG	4 cut(s)	33, 144, 162, 457
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	2 cut(s)	120, 221
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	4 cut(s)	117, 167, 177, 239
BtgI	CCRYGG	1 cut(s)	219
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	297
Cac8I	GCNNGC	5 cut(s)	130, 187, 237, 255, 312
CfoI	GCGC	3 cut(s)	271, 316, 454
Cfr10I	RCCGGY	2 cut(s)	253, 388
Cfr13I	GGNCC	2 cut(s)	166, 238
Cfr42I	CCGCGG	1 cut(s)	222
CseI	GACGC	1 cut(s)	109
CviAII	CATG	1 cut(s)	328
DinI	GGCGCC	1 cut(s)	453
DpnI	GATC	3 cut(s)	75, 225, 284
DpnII	GATC	3 cut(s)	73, 223, 282
EaeI	YGGCCR	1 cut(s)	115
EagI	CGGCCG	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	377
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	66, 264
Eco32I	GATATC	1 cut(s)	474
Eco52I	CGGCCG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	33, 162
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	66, 264
EgeI	GGCGCC	1 cut(s)	453
EheI	GGCGCC	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	66, 264
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	1 cut(s)	331
FaiI	YATR	3 cut(s)	329, 339, 350
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	1 cut(s)	327
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	3 cut(s)	270, 315, 453
GluI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
GsaI	CCCAGC	1 cut(s)	244
HaeII	RGCGCY	2 cut(s)	317, 455
HaeIII	GGCC	4 cut(s)	117, 167, 177, 239
HapII	CCGG	5 cut(s)	114, 145, 254, 389, 459
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	3 cut(s)	271, 316, 454
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	3 cut(s)	269, 314, 452
HinP1I	GCGC	3 cut(s)	269, 314, 452
HinfI	GANTC	1 cut(s)	433
HpaII	CCGG	5 cut(s)	114, 145, 254, 389, 459
Hpy188I	TCNGA	3 cut(s)	78, 98, 173
Hpy188III	TCNNGA	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	63, 212
HpyCH4IV	ACGT	2 cut(s)	137, 345
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	241, 250, 259, 268, 285
HpySE526I	ACGT	2 cut(s)	137, 345
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	3 cut(s)	269, 314, 452
KasI	GGCGCC	1 cut(s)	451
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
KspI	CCGCGG	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	73, 223, 282
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	137, 345
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	75, 225, 284
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	3 cut(s)	73, 223, 282
MboII	GAAGA	3 cut(s)	16, 29, 409
MfeI	CAATTG	1 cut(s)	46
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	3 cut(s)	46, 296, 445
Mly113I	GGCGCC	1 cut(s)	452
MnlI	CCTC	6 cut(s)	97, 100, 121, 167, 179, 324
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	1 cut(s)	478
MspA1I	CMGCKG	2 cut(s)	221, 235
MspI	CCGG	5 cut(s)	114, 145, 254, 389, 459
MspR9I	CCNGG	4 cut(s)	35, 146, 164, 459
MunI	CAATTG	1 cut(s)	46
MvaI	CCWGG	2 cut(s)	35, 164
MvnI	CGCG	2 cut(s)	120, 221
MwoI	GCNNNNNNNGC	5 cut(s)	241, 250, 259, 268, 285
NaeI	GCCGGC	1 cut(s)	255
NarI	GGCGCC	1 cut(s)	452
NciI	CCSGG	2 cut(s)	146, 459
NdeII	GATC	3 cut(s)	73, 223, 282
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	4 cut(s)	80, 217, 387, 453
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	433
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	7 cut(s)	27, 119, 220, 361, 379, 382, 456
PluTI	GGCGCC	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	33, 162
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	2 cut(s)	33, 162
PspN4I	GGNNCC	4 cut(s)	80, 217, 387, 453
PspPI	GGNCC	2 cut(s)	166, 238
PsuI	RGATCY	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	235
SacII	CCGCGG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	478
SatI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
Sau3AI	GATC	3 cut(s)	73, 223, 282
Sau96I	GGNCC	2 cut(s)	166, 238
ScrFI	CCNGG	4 cut(s)	35, 146, 164, 459
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	4 cut(s)	72, 140, 237, 348
SfaNI	GCATC	1 cut(s)	45
SfoI	GGCGCC	1 cut(s)	453
Sfr303I	CCGCGG	1 cut(s)	222
SgrBI	CCGCGG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	46, 296, 445
SspDI	GGCGCC	1 cut(s)	451
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	4 cut(s)	33, 144, 162, 457
StyI	CCWWGG	2 cut(s)	66, 264
TaaI	ACNGT	2 cut(s)	63, 212
TaiI	ACGT	2 cut(s)	140, 348
TaqI	TCGA	1 cut(s)	404
TasI	AATT	3 cut(s)	46, 296, 445
TauI	GCSGC	6 cut(s)	120, 221, 362, 380, 383, 457
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	478
Tru9I	TTAA	1 cut(s)	478
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	40
XapI	RAATTY	2 cut(s)	296, 445
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.