Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

17396800 .. 17397679

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTCCATTCCTTTATTCATTTCCTTTTTACACAACCCAAAAGAGTAAACTACCTTCCTTCCTTCTTGCCAAAAGTTGATCATCACATCATCATCATGAAGAGAAGCATAACAGAGCTCGATCACAGCGTAACCATGGCGAACTGCTTGATGCTGCTCTCTCGAGGCAACGACTACGACTCGTTGATCTCCACTACCTCATCGCCGACGTCCTCACCTAGCCGCGTCTTCGAGTGCAAGACATGTAATCGTCAGTTCCCTTCGTTCCAGGCACTCGGAGGACACAGAGCGAGTCACAAGAAGCCGAGGCTTGCCGGAGGAGACGGATCGAGTTCCGACAGCCAGTCGTCTTCGCCGAGCAAACCCAAGACGCACGAGTGCAACATATGCGGGTTGGAGTTTGCTATAGGTCAGGCCTTAGGGGGTCATATGAGAAGGCACAGAGCGGCGGTGACTGATAACGACCACCGGAATCTTAATGGAGCACAATCGAAACCTATGATGGGTTTGAGTTCTAATCTGGGACAAGGAGTTGTTCCGGTTTTGAAGAAGACGAATAGCAGTCGGAGAGTTTTGTGTTTGGATCTCAACTTGACGCCCTTTGAGAATGACATGGAGATTCTTGGAATAGGGAAAACAACTCCTCCTCTTGTTGAGTTTATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

223

Amino Acids

24.48

Weight (kDa)

9.38

Isoelectric Point (pI)

63.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	76 - 102	5.5e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	125 - 149	3.9e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	446
AccII	CGCG	1 cut(s)	225
AciI	CCGC	4 cut(s)	223, 390, 446, 449
AclWI	GGATC	2 cut(s)	334, 591
AcyI	GRCGYC	2 cut(s)	209, 596
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	547
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	2 cut(s)	120, 487
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	334, 591
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	207, 463
AvaI	CYCGRG	1 cut(s)	162
AxyI	CCTNAGG	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	120
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BauI	CACGAG	1 cut(s)	374
BbsI	GAAGAC	3 cut(s)	220, 342, 557
Bbv12I	GWGCWC	2 cut(s)	120, 487
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	496
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	219, 667
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	3 cut(s)	155, 223, 447
BlsI	GCNGC	3 cut(s)	156, 224, 448
Bme1390I	CCNGG	1 cut(s)	269
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	141
BpiI	GAAGAC	3 cut(s)	220, 342, 557
BsaHI	GRCGYC	2 cut(s)	209, 596
BsaJI	CCNNGG	2 cut(s)	135, 305
BsaWI	WCCGGW	2 cut(s)	468, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	1 cut(s)	343
Bse21I	CCTNAGG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	135, 305
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	3 cut(s)	333, 633, 636
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	416
BsiHKAI	GWGCWC	2 cut(s)	120, 487
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	315, 469, 539
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	1 cut(s)	315
BsmBI	CGTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	120, 487
Bsp143I	GATC	5 cut(s)	79, 121, 186, 326, 583
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	4 cut(s)	223, 390, 446, 449
BspANI	GGCC	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	96
BspPI	GGATC	2 cut(s)	334, 591
BsrBI	CCGCTC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	135, 305
BssMI	GATC	5 cut(s)	79, 121, 186, 326, 583
BssNI	GRCGYC	2 cut(s)	209, 596
BssSI	CACGAG	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	2 cut(s)	209, 596
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	418
BstDSI	CCRYGG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	5 cut(s)	82, 124, 189, 329, 586
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	5 cut(s)	79, 121, 186, 326, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	3 cut(s)	220, 342, 557
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	312
CciI	TCATGA	1 cut(s)	96
CseI	GACGC	3 cut(s)	214, 379, 604
CviAII	CATG	4 cut(s)	97, 136, 243, 613
CviJI	RGCY	6 cut(s)	118, 222, 304, 310, 342, 416
CviKI_1	RGCY	6 cut(s)	118, 222, 304, 310, 342, 416
DdeI	CTNAG	1 cut(s)	418
DpnI	GATC	5 cut(s)	81, 123, 188, 328, 585
DpnII	GATC	5 cut(s)	79, 121, 186, 326, 583
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	95
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	4 cut(s)	100, 139, 246, 616
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	4 cut(s)	96, 135, 242, 612
FauI	CCCGC	1 cut(s)	383
FauNDI	CATATG	2 cut(s)	386, 429
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	155, 223, 447
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	3 cut(s)	155, 223, 447
FspBI	CTAG	2 cut(s)	219, 667
GluI	GCNGC	3 cut(s)	155, 223, 447
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	3 cut(s)	315, 469, 539
HgaI	GACGC	3 cut(s)	214, 379, 604
Hin1I	GRCGYC	2 cut(s)	209, 596
Hin1II	CATG	4 cut(s)	100, 139, 246, 616
HinfI	GANTC	4 cut(s)	179, 292, 472, 619
HpaII	CCGG	3 cut(s)	315, 469, 539
HphI	GGTGA	2 cut(s)	207, 463
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	278, 337, 567
Hpy188III	TCNNGA	2 cut(s)	97, 162
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	5 cut(s)	65, 69, 73, 270, 429
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	237, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	1 cut(s)	418
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	2 cut(s)	209, 596
Hsp92II	CATG	4 cut(s)	100, 139, 246, 616
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	79, 121, 186, 326, 583
LmnI	GCTCC	1 cut(s)	482
LpnPI	CCDG	8 cut(s)	254, 281, 328, 356, 398, 482, 506, 552
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	219, 667
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	3 cut(s)	130, 293, 451
MalI	GATC	5 cut(s)	81, 123, 188, 328, 585
MbiI	CCGCTC	1 cut(s)	446
MboI	GATC	5 cut(s)	79, 121, 186, 326, 583
MboII	GAAGA	5 cut(s)	112, 220, 342, 559, 562
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	2 cut(s)	120, 487
MlyI	GAGTC	2 cut(s)	173, 301
MmeI	TCCRAC	3 cut(s)	360, 375, 545
MnlI	CCTC	8 cut(s)	158, 208, 223, 272, 300, 311, 654, 657
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	3 cut(s)	315, 469, 539
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	2 cut(s)	386, 429
NdeII	GATC	5 cut(s)	79, 121, 186, 326, 583
NlaIII	CATG	4 cut(s)	100, 139, 246, 616
NmeAIII	GCCGAG	2 cut(s)	330, 381
NmuCI	GTSAC	2 cut(s)	293, 451
NspI	RCATGY	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	162
PagI	TCATGA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	416
PciI	ACATGT	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 353
PfeI	GAWTC	2 cut(s)	472, 619
PkrI	GCNGC	3 cut(s)	156, 224, 448
PleI	GAGTC	2 cut(s)	173, 300
PpsI	GAGTC	2 cut(s)	173, 300
PscI	ACATGT	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	583
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	3 cut(s)	155, 223, 447
Sau3AI	GATC	5 cut(s)	79, 121, 186, 326, 583
SchI	GAGTC	2 cut(s)	173, 301
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	120, 487
SetI	ASST	7 cut(s)	57, 120, 200, 212, 220, 412, 499
SfaNI	GCATC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	405
Sfr274I	CTCGAG	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	4 cut(s)	223, 390, 446, 449
SspMI	CTAG	2 cut(s)	219, 667
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	5 cut(s)	120, 163, 231, 329, 491
TauI	GCSGC	2 cut(s)	225, 449
TfiI	GAWTC	2 cut(s)	472, 619
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseFI	GTSAC	2 cut(s)	293, 451
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	2 cut(s)	293, 451
TspDTI	ATGAA	2 cut(s)	8, 113
TspGWI	ACGGA	1 cut(s)	339
XceI	RCATGY	1 cut(s)	246
XhoI	CTCGAG	1 cut(s)	162
XspI	CTAG	2 cut(s)	219, 667
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.