Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

5667950 .. 5668753

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G084100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGCGAGGCCGAGAAGATCAAGATGACCAAACTCTAGATTTGGTCAATTGTTTGATGCTACTATCCAAAATAGACCAACCCGATTCCTCCCCCACCAAAGCCGAAGATTTAAAACGGGGCCGAGTGTTTACATGCAAGACTTGTAATCGGGAATTCCCCTCGTTCCAGGCCCTCGGGGGCCACAGAGCGAGCCACAAGAAGCCGAAGCTGATGCCCGGCGGGGCAGTCGACCTCCTACAGCTGGCGCAATCTCCGGGGTCCCCCGCGAAGCCCAAGACGCACGAGTGCCACGTATGCGGGCTCGAGTTTGCGGTTGGACAGGCGCTCGGGGGACACATGAGGAGACATAGAGAAGAAATTCAAGGTAATGCGGTTCAAGCTCGGTCGTCGCCGGCCATGCCGGTTTTGAAGAAGTCGAATAGTAGTAAAAGGGTGTCGAGCTTCAACTTGGACTTGAATTTGGATTTGAGATTGGGTCTGCCTGGTCATCATAGCCAATACGATTTGGCGACGAAGCTGCAGTTGATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

179

Amino Acids

19.57

Weight (kDa)

9.45

Isoelectric Point (pI)

66.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	269
AciI	CCGC	5 cut(s)	222, 267, 300, 314, 374
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	3 cut(s)	155, 360, 460
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	5 cut(s)	365, 380, 412, 448, 460
AjnI	CCWGG	2 cut(s)	168, 484
AluBI	AGCT	5 cut(s)	211, 244, 383, 444, 520
AluI	AGCT	5 cut(s)	211, 244, 383, 444, 520
Alw26I	GTCTC	1 cut(s)	340
Ama87I	CYCGRG	3 cut(s)	176, 305, 329
AoxI	GGCC	5 cut(s)	10, 121, 171, 181, 396
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	3 cut(s)	155, 360, 460
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	2 cut(s)	250, 328
AspS9I	GGNCC	4 cut(s)	121, 172, 181, 261
AsuC2I	CCSGG	2 cut(s)	219, 258
AvaI	CYCGRG	3 cut(s)	176, 305, 329
AvaII	GGWCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	306
BauI	CACGAG	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	507
BcgI	CGANNNNNNTGC	4 cut(s)	196, 230, 502, 536
BciT130I	CCWGG	2 cut(s)	170, 486
BcnI	CCSGG	2 cut(s)	219, 258
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	2 cut(s)	239, 521
BfoI	RGCGCY	1 cut(s)	329
BisI	GCNGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	522
Bme1390I	CCNGG	4 cut(s)	170, 219, 258, 486
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	3 cut(s)	176, 305, 329
BmgT120I	GGNCC	4 cut(s)	121, 172, 181, 261
BmiI	GGNNCC	4 cut(s)	122, 182, 262, 263
BmrFI	CCNGG	4 cut(s)	170, 219, 258, 486
BmsI	GCATC	2 cut(s)	48, 204
BpuMI	CCSGG	2 cut(s)	219, 258
BsaAI	YACGTR	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	175, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	2 cut(s)	394, 403
BseBI	CCWGG	2 cut(s)	170, 486
BseDI	CCNNGG	2 cut(s)	175, 257
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	5 cut(s)	12, 123, 173, 183, 398
BsiEI	CGRYCG	1 cut(s)	389
BsiHKCI	CYCGRG	3 cut(s)	176, 305, 329
BsiSI	CCGG	4 cut(s)	219, 257, 395, 404
BslFI	GGGAC	2 cut(s)	247, 348
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	247, 348
BsnI	GGCC	5 cut(s)	12, 123, 173, 183, 398
BsoBI	CYCGRG	3 cut(s)	176, 305, 329
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	5 cut(s)	222, 267, 300, 314, 374
BspANI	GGCC	5 cut(s)	12, 123, 173, 183, 398
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	4 cut(s)	122, 182, 262, 263
BspMAI	CTGCAG	1 cut(s)	525
BsrFI	RCCGGY	2 cut(s)	394, 403
BssAI	RCCGGY	2 cut(s)	394, 403
BssECI	CCNNGG	2 cut(s)	175, 257
BssMI	GATC	1 cut(s)	19
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	170, 486
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	4 cut(s)	193, 246, 302, 396
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	2 cut(s)	250, 328
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	19
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 297, 380, 400
BstNI	CCWGG	2 cut(s)	170, 486
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	4 cut(s)	168, 217, 256, 484
BstSFI	CTRYAG	2 cut(s)	239, 521
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	507
BsuRI	GGCC	5 cut(s)	12, 123, 173, 183, 398
Cac8I	GCNNGC	4 cut(s)	193, 246, 302, 396
CfoI	GCGC	2 cut(s)	250, 328
Cfr10I	RCCGGY	2 cut(s)	394, 403
Cfr13I	GGNCC	4 cut(s)	121, 172, 181, 261
CseI	GACGC	1 cut(s)	289
CviAII	CATG	3 cut(s)	135, 340, 400
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DraI	TTTAAA	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	261
Eco88I	CYCGRG	3 cut(s)	176, 305, 329
EcoO109I	RGGNCCY	2 cut(s)	172, 261
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	168, 484
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	3 cut(s)	138, 343, 403
FaiI	YATR	6 cut(s)	136, 298, 341, 351, 401, 495
FaqI	GGGAC	2 cut(s)	247, 348
FatI	CATG	3 cut(s)	134, 339, 399
FauI	CCCGC	3 cut(s)	215, 274, 293
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	2 cut(s)	249, 327
GluI	GCNGC	1 cut(s)	521
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	5 cut(s)	12, 123, 173, 183, 398
HapII	CCGG	4 cut(s)	219, 257, 395, 404
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	2 cut(s)	250, 328
Hin1II	CATG	3 cut(s)	138, 343, 403
Hin6I	GCGC	2 cut(s)	248, 326
HinP1I	GCGC	2 cut(s)	248, 326
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	4 cut(s)	219, 257, 395, 404
Hpy166II	GTNNAC	2 cut(s)	132, 232
Hpy188III	TCNNGA	4 cut(s)	23, 38, 152, 534
Hpy8I	GTNNAC	2 cut(s)	132, 232
Hpy99I	CGWCG	2 cut(s)	394, 517
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	2 cut(s)	138, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 297, 380, 400
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	138, 343, 403
HspAI	GCGC	2 cut(s)	248, 326
KflI	GGGWCCC	1 cut(s)	261
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	19
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	2 cut(s)	48, 204
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	294
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	4 cut(s)	29, 119, 368, 424
MfeI	CAATTG	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	4 cut(s)	49, 155, 360, 460
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	5 cut(s)	100, 172, 185, 245, 336
MroNI	GCCGGC	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	4 cut(s)	219, 257, 395, 404
MspR9I	CCNGG	4 cut(s)	170, 219, 258, 486
MunI	CAATTG	1 cut(s)	49
MvaI	CCWGG	2 cut(s)	170, 486
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	4 cut(s)	280, 297, 380, 400
NaeI	GCCGGC	1 cut(s)	396
NciI	CCSGG	2 cut(s)	219, 258
NdeII	GATC	1 cut(s)	19
NgoMIV	GCCGGC	1 cut(s)	394
NlaIII	CATG	3 cut(s)	138, 343, 403
NlaIV	GGNNCC	4 cut(s)	122, 182, 262, 263
NmeAIII	GCCGAG	2 cut(s)	38, 149
NspI	RCATGY	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	522
Ppu21I	YACGTR	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	168, 484
PspGI	CCWGG	2 cut(s)	168, 484
PspN4I	GGNNCC	4 cut(s)	122, 182, 262, 263
PspPI	GGNCC	4 cut(s)	121, 172, 181, 261
PspPPI	RGGWCCY	1 cut(s)	261
PspXI	VCTCGAGB	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	525
PvuII	CAGCTG	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	4 cut(s)	121, 172, 181, 261
ScrFI	CCNGG	4 cut(s)	170, 219, 258, 486
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	8 cut(s)	213, 237, 246, 297, 370, 385, 446, 522
SfaNI	GCATC	2 cut(s)	48, 204
SfcI	CTRYAG	2 cut(s)	239, 521
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	261
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	49, 155, 360, 460
SsiI	CCGC	5 cut(s)	222, 267, 300, 314, 374
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	4 cut(s)	168, 217, 256, 484
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	4 cut(s)	231, 306, 419, 440
TaqII	GACCGA	1 cut(s)	375
TasI	AATT	4 cut(s)	49, 155, 360, 460
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TseI	GCWGC	1 cut(s)	520
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	3 cut(s)	155, 360, 460
XbaI	TCTAGA	1 cut(s)	37
XceI	RCATGY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.