Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

24102814 .. 24103794

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTGCGATATCGGAGATCAAGTCGACGGTGGATGTCACGGCGGCGAATTGTTTGATGCTTTTATCTAGAGTTGGACAAGAAAACGTTGACGGTGGCGATCAAAAACGCGTTTTCACATGTAAAACGTGTTTGAAGCAGTTTCATTCGTTCCAAGCCTTAGGAGGTCACCGTGCGAGTCACAAGAAGCCTAACAACGACGCTTTGTCGTCTGGATTGATGAAGAAGGTGAAAACGTCGTCGCATCCTTGTCCCATATGTGGAGTGGAGTTTCCGATGGGACAAGCTTTGGGAGGACACATGAGGAGACACAGGAACGAGAGTGGGGCTGCTGGTGGCGCGTTGGTTACACGCGCTTTGTTGCCGGAGCCCACGGTGACTACGTTGAAGAAATCTAGCAGTGGGAAGAGAGTGGCTTGTTTGGATCTGAGTCTAGGGATGGTGGACAATTTGAATCTCAAGTTGGAGCTTGGAAGAACAGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

162

Amino Acids

17.33

Weight (kDa)

9.62

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	38 - 64	1.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	82 - 105	7.8e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	26
AccII	CGCG	3 cut(s)	111, 341, 354
AciI	CCGC	1 cut(s)	44
AclI	AACGTT	1 cut(s)	87
AclWI	GGATC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflIII	ACRYGT	3 cut(s)	109, 119, 128
AgsI	TTSAA	3 cut(s)	136, 388, 454
AhdI	GACNNNNNGTC	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	2 cut(s)	287, 469
AluI	AGCT	2 cut(s)	287, 469
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	329
AspLEI	GCGC	2 cut(s)	341, 356
AsuHPI	GGTGA	3 cut(s)	161, 241, 388
AxyI	CCTNAGG	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	271, 433
BceAI	ACGGC	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	3 cut(s)	69, 396, 434
BisI	GCNGC	2 cut(s)	45, 330
BlsI	GCNGC	2 cut(s)	46, 331
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	369
BmsI	GCATC	2 cut(s)	48, 253
BpuEI	CTTGAG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse21I	CCTNAGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	3 cut(s)	40, 244, 444
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	3 cut(s)	111, 341, 354
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	2 cut(s)	237, 294
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	237, 294
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	18, 100, 424
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	420
BspFNI	CGCG	3 cut(s)	111, 341, 354
BspLI	GGNNCC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	3 cut(s)	18, 100, 424
Bst4CI	ACNGT	5 cut(s)	31, 95, 173, 376, 481
Bst6I	CTCTTC	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	160, 428
BstDSI	CCRYGG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	40, 244, 444
BstFNI	CGCG	3 cut(s)	111, 341, 354
BstHHI	GCGC	2 cut(s)	341, 356
BstKTI	GATC	3 cut(s)	21, 103, 427
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	3 cut(s)	18, 100, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	123
BstPI	GGTNACC	1 cut(s)	167
BstUI	CGCG	3 cut(s)	111, 341, 354
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu36I	CCTNAGG	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	40, 244, 444
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	406
CfoI	GCGC	2 cut(s)	341, 356
CseI	GACGC	1 cut(s)	209
CviAII	CATG	2 cut(s)	120, 301
CviJI	RGCY	7 cut(s)	158, 190, 287, 329, 370, 416, 469
CviKI_1	RGCY	7 cut(s)	158, 190, 287, 329, 370, 416, 469
DdeI	CTNAG	2 cut(s)	160, 428
DpnI	GATC	3 cut(s)	20, 102, 426
DpnII	GATC	3 cut(s)	18, 100, 424
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	401
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	12
Eco81I	CCTNAGG	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	372
FaeI	CATG	2 cut(s)	123, 304
FaiI	YATR	4 cut(s)	121, 257, 259, 302
FaqI	GGGAC	2 cut(s)	237, 294
FatI	CATG	2 cut(s)	119, 300
FauNDI	CATATG	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	45, 330
FokI	GGATG	3 cut(s)	47, 231, 451
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	45, 330
FspBI	CTAG	3 cut(s)	69, 396, 434
GlaI	GCGC	2 cut(s)	340, 355
GluI	GCNGC	2 cut(s)	45, 330
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	341, 356
Hin1II	CATG	2 cut(s)	123, 304
Hin6I	GCGC	2 cut(s)	339, 354
HinP1I	GCGC	2 cut(s)	339, 354
HincII	GTYRAC	2 cut(s)	27, 91
HindII	GTYRAC	2 cut(s)	27, 91
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	3 cut(s)	178, 430, 454
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	3 cut(s)	161, 241, 388
Hpy166II	GTNNAC	3 cut(s)	27, 91, 445
Hpy188I	TCNGA	3 cut(s)	16, 276, 429
Hpy188III	TCNNGA	2 cut(s)	69, 213
Hpy8I	GTNNAC	3 cut(s)	27, 91, 445
Hpy99I	CGWCG	4 cut(s)	31, 203, 241, 244
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	5 cut(s)	31, 95, 173, 376, 481
HpyCH4IV	ACGT	4 cut(s)	87, 128, 236, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	160, 428
HpySE526I	ACGT	4 cut(s)	87, 128, 236, 383
Hsp92II	CATG	2 cut(s)	123, 304
HspAI	GCGC	2 cut(s)	339, 354
Kzo9I	GATC	3 cut(s)	18, 100, 424
LmnI	GCTCC	2 cut(s)	367, 466
LpnPI	CCDG	4 cut(s)	198, 298, 318, 378
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	48, 253
MaeI	CTAG	3 cut(s)	69, 396, 434
MaeII	ACGT	4 cut(s)	87, 128, 236, 383
MaeIII	GTNAC	5 cut(s)	37, 167, 179, 346, 376
MalI	GATC	3 cut(s)	20, 102, 426
MboI	GATC	3 cut(s)	18, 100, 424
MboII	GAAGA	4 cut(s)	235, 400, 418, 486
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	2 cut(s)	49, 448
MluI	ACGCGT	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	187, 439
MmeI	TCCRAC	2 cut(s)	55, 444
MnlI	CCTC	3 cut(s)	158, 287, 297
MspI	CCGG	1 cut(s)	365
MvnI	CGCG	3 cut(s)	111, 341, 354
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeI	CATATG	1 cut(s)	257
NdeII	GATC	3 cut(s)	18, 100, 424
NlaIII	CATG	2 cut(s)	123, 304
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	4 cut(s)	37, 167, 179, 376
NspI	RCATGY	1 cut(s)	123
PciI	ACATGT	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	46, 331
PleI	GAGTC	2 cut(s)	186, 438
PpsI	GAGTC	2 cut(s)	186, 438
PscI	ACATGT	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	25
SatI	GCNGC	2 cut(s)	45, 330
Sau3AI	GATC	3 cut(s)	18, 100, 424
SchI	GAGTC	2 cut(s)	187, 439
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	8 cut(s)	90, 131, 169, 231, 239, 289, 386, 471
SfaNI	GCATC	2 cut(s)	48, 253
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	49, 448
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	3 cut(s)	69, 396, 434
TaaI	ACNGT	5 cut(s)	31, 95, 173, 376, 481
TaiI	ACGT	4 cut(s)	90, 131, 239, 386
TaqI	TCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	49, 448
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	454
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	4 cut(s)	37, 167, 179, 376
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	4 cut(s)	37, 167, 179, 376
TspDTI	ATGAA	2 cut(s)	134, 236
TspRI	CASTG	1 cut(s)	406
XbaI	TCTAGA	1 cut(s)	68
XceI	RCATGY	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	3 cut(s)	69, 396, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.