Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

44102408 .. 44103574

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0353200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACCAGCAGGATACCTGAATATAAAGCTCTCCTGTCGTCGGATTGTCGTCTCCAGAGAATGAACCTACGTGGAGAACTTTGCACTGAACGAGCTCCCGGAAGGGGCGAACGTGTGGCTAAAAGCGGTCGGGAATACGAGAGATCTCTTCCATTAAGTTTGATCAAACTTACCATGTCGTTTGAGAGTCGACCAACATGGGCTACTCAGGCCAATGTTTGTTTTGGCATTCTTAGATTCGACCCTCACGCAGAAGATGAGGTCATCAAACCATGCCCTAGTTATGGCAACCTGTTTCAGGCTTATACTCTGGAAAAGGTGAACAATGATGAGCATGGTGATGATAAGATGTTGGTCGGAGCGAACTTTTATTCGACACTACACTGGATGTTGCAGAGTAAGCAAGAATGGGGGAACGATTTTAACTTTCGAGGTCGATCCATCTTTGGCTTCGGCGTATTAGAATGGACCGAAAATGTCTTGGAGACCTTCAAGGATACCTTATATGAAGCAGGAATATATGGAGCTGTTGCTGTGTCTCGTTATCCTTACGAGTCTTCAAAGAATGTTTGGAGGGCATTTTGTGAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

197

Amino Acids

22.71

Weight (kDa)

5.99

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	190
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	432
AfiI	CCNNNNNNNGG	4 cut(s)	40, 104, 284, 298
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	493, 561
AluBI	AGCT	3 cut(s)	29, 95, 527
AluI	AGCT	3 cut(s)	29, 95, 527
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	3 cut(s)	56, 479, 543
AlwI	GGATC	1 cut(s)	432
AoxI	GGCC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	468
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	331, 350
AvaII	GGWCC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	1 cut(s)	449
BciVI	GTATCC	2 cut(s)	6, 490
BclI	TGATCA	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	3 cut(s)	56, 479, 543
BfaI	CTAG	1 cut(s)	279
BfuI	GTATCC	2 cut(s)	6, 490
BglII	AGATCT	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	549
BpmI	CTGGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 104, 284, 298
Bse1I	ACTGG	1 cut(s)	389
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	4 cut(s)	40, 104, 284, 298
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	4 cut(s)	40, 104, 284, 298
BsmAI	GTCTC	3 cut(s)	56, 479, 543
BsmBI	CGTCTC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	143, 162, 437
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	389
BssMI	GATC	3 cut(s)	143, 162, 437
Bst6I	CTCTTC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	207, 233
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	3 cut(s)	146, 165, 440
BstMAI	GTCTC	3 cut(s)	56, 479, 543
BstMBI	GATC	3 cut(s)	143, 162, 437
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 400
BstSCI	CCNGG	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuI	GTATCC	2 cut(s)	6, 490
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	84, 382
Cfr13I	GGNCC	1 cut(s)	468
CviAII	CATG	4 cut(s)	175, 198, 273, 335
CviJI	RGCY	8 cut(s)	29, 95, 119, 203, 212, 302, 450, 527
CviKI_1	RGCY	8 cut(s)	29, 95, 119, 203, 212, 302, 450, 527
DdeI	CTNAG	2 cut(s)	207, 233
DpnI	GATC	3 cut(s)	145, 164, 439
DpnII	GATC	3 cut(s)	143, 162, 437
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	468
Eco53kI	GAGCTC	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	95
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	4 cut(s)	178, 201, 276, 338
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	4 cut(s)	174, 197, 272, 334
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	190
FokI	GGATG	1 cut(s)	400
FriOI	GRGCYC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	4 cut(s)	178, 201, 276, 338
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HinfI	GANTC	3 cut(s)	187, 237, 554
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	331, 350
Hpy166II	GTNNAC	2 cut(s)	191, 322
Hpy188I	TCNGA	2 cut(s)	43, 359
Hpy188III	TCNNGA	3 cut(s)	55, 131, 311
Hpy8I	GTNNAC	2 cut(s)	191, 322
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	96, 499
HpyCH4IV	ACGT	2 cut(s)	70, 112
HpyCH4V	TGCA	2 cut(s)	84, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 400
HpyF3I	CTNAG	2 cut(s)	207, 233
HpySE526I	ACGT	2 cut(s)	70, 112
Hsp92II	CATG	4 cut(s)	178, 201, 276, 338
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	143, 162, 437
LmnI	GCTCC	3 cut(s)	100, 359, 524
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	70, 112
MalI	GATC	3 cut(s)	145, 164, 439
MboI	GATC	3 cut(s)	143, 162, 437
MboII	GAAGA	3 cut(s)	140, 266, 549
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	587
MlyI	GAGTC	2 cut(s)	196, 563
MmeI	TCCRAC	2 cut(s)	21, 337
MnlI	CCTC	4 cut(s)	253, 255, 425, 567
MseI	TTAA	2 cut(s)	155, 423
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	209, 400
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	143, 162, 437
NlaIII	CATG	4 cut(s)	178, 201, 276, 338
PctI	GAATGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	237
PfoI	TCCNGGA	1 cut(s)	97
PleI	GAGTC	2 cut(s)	195, 562
PpsI	GAGTC	2 cut(s)	195, 562
Ppu21I	YACGTR	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	97
SalI	GTCGAC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	155, 423
Sau3AI	GATC	3 cut(s)	143, 162, 437
Sau96I	GGNCC	1 cut(s)	468
SchI	GAGTC	2 cut(s)	196, 563
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	587
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	97
TaiI	ACGT	2 cut(s)	73, 115
TaqI	TCGA	5 cut(s)	190, 240, 374, 430, 436
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	1 cut(s)	587
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	155, 423
Tru9I	TTAA	2 cut(s)	155, 423
TscAI	CASTG	2 cut(s)	91, 389
TspDTI	ATGAA	2 cut(s)	77, 522
TspRI	CASTG	2 cut(s)	91, 389
VpaK11BI	GGWCC	1 cut(s)	468
XagI	CCTNNNNNAGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	190
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.